Wall clock time and date at job start Mon Mar 30 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.51592 * 2 1 4 4 C 1.53168 * 109.54619 * 240.12341 * 2 1 3 5 5 C 1.51829 * 107.39490 * 181.51671 * 4 2 1 6 6 O 1.21343 * 121.72916 * 220.04066 * 5 4 2 7 7 C 1.47076 * 116.54438 * 39.76803 * 5 4 2 8 8 C 1.39788 * 120.68798 * 168.14828 * 7 5 4 9 9 C 1.36582 * 119.78599 * 179.67766 * 8 7 5 10 10 C 1.39276 * 120.26787 * 359.97119 * 9 8 7 11 11 O 1.35668 * 119.71684 * 180.16280 * 10 9 8 12 12 C 1.42893 * 116.99944 * 0.02562 * 11 10 9 13 13 C 1.50696 * 109.47541 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00012 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00454 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99655 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99931 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47035 * 89.99811 * 17 15 13 19 19 H 1.48506 * 109.46741 * 209.99613 * 17 15 13 20 20 H 1.48494 * 109.47323 * 329.99826 * 17 15 13 21 21 C 1.38727 * 120.56978 * 0.14585 * 10 9 8 22 22 C 1.38547 * 119.90343 * 0.04331 * 21 10 9 23 23 O 1.35328 * 120.01790 * 179.37447 * 22 21 10 24 24 H 1.09001 * 109.47520 * 299.93542 * 1 2 3 25 25 H 1.08999 * 109.47136 * 59.93231 * 1 2 3 26 26 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47167 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46572 * 300.06771 * 3 2 1 29 29 H 1.08999 * 109.46870 * 60.06541 * 3 2 1 30 30 H 1.08992 * 109.89430 * 61.98585 * 4 2 1 31 31 H 1.09003 * 109.72786 * 300.95291 * 4 2 1 32 32 H 1.08006 * 120.10756 * 359.65535 * 8 7 5 33 33 H 1.07997 * 119.86815 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47357 * 299.99611 * 12 11 10 35 35 H 1.09007 * 109.47424 * 59.99543 * 12 11 10 36 36 H 0.96999 * 119.99890 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.04339 * 179.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 6 2.0424 -0.7190 -1.2516 5 6 3.5592 -0.7240 -1.1832 6 8 4.2429 -0.5355 -2.1677 7 6 4.1567 -0.9629 0.1393 8 6 5.5228 -1.2305 0.2671 9 6 6.0596 -1.4431 1.5049 10 6 5.2517 -1.3936 2.6384 11 8 5.7973 -1.6033 3.8627 12 6 7.2008 -1.8672 3.9109 13 6 7.6246 -2.0721 5.3425 14 1 6.8951 -2.0068 6.1363 15 6 8.9438 -2.3419 5.6392 16 7 9.8322 -2.4209 4.6727 17 14 9.4691 -2.5950 7.4138 18 1 9.3549 -4.0338 7.7634 19 1 10.8778 -2.1554 7.5805 20 1 8.5924 -1.7973 8.3082 21 6 3.8941 -1.1316 2.5263 22 6 3.3327 -0.9174 1.2778 23 8 2.0063 -0.6741 1.1647 24 1 -0.3634 0.5128 0.8905 25 1 -0.3633 0.5149 -0.8894 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1311 1.4413 -0.0005 28 1 1.6771 1.9566 -0.8894 29 1 1.6791 1.9559 0.8906 30 1 1.7129 -0.1888 -2.1450 31 1 1.6682 -1.7427 -1.2670 32 1 6.1516 -1.2693 -0.6101 33 1 7.1147 -1.6503 1.6052 34 1 7.4216 -2.7655 3.3343 35 1 7.7443 -1.0218 3.4889 36 1 10.7602 -2.6111 4.8813 37 1 3.2755 -1.0956 3.4108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154636306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:37 Heat of formation + Delta-G solvation = -117.389647 kcal Electronic energy + Delta-G solvation = -20982.496649 eV Core-core repulsion = 17689.380727 eV Total energy + Delta-G solvation = -3293.115922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.36967 -40.61541 -39.58216 -37.82293 -35.17961 -35.05330 -32.02267 -31.59529 -29.75685 -28.97577 -28.29654 -25.61725 -24.32009 -23.51332 -22.55483 -20.18462 -19.40099 -18.76607 -18.04335 -17.56137 -17.05589 -16.79898 -16.63840 -16.23868 -15.99736 -15.76555 -15.56818 -14.96105 -14.70190 -14.22751 -14.15857 -13.77977 -13.63620 -13.30990 -13.16107 -13.02834 -13.01143 -12.81877 -12.71199 -12.55541 -12.15055 -12.06321 -11.82792 -11.60015 -11.38982 -10.79589 -10.74341 -9.69885 -9.27137 -8.41153 -6.55687 -0.40337 0.23647 1.23744 1.40062 1.42601 1.54245 1.74997 2.28396 2.59477 2.72364 2.91168 2.94324 3.43324 3.57012 3.65445 3.74854 3.85608 4.00228 4.14031 4.29443 4.43448 4.57674 4.63057 4.67788 4.74064 4.77519 4.88329 4.90981 4.91837 4.94534 5.14395 5.16442 5.24046 5.33137 5.36075 5.50441 5.78058 6.24715 6.36404 6.41095 6.66565 7.15918 8.70871 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.003705 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.867265 B = 7556.072012 C = 8126.089627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.113 3.887 3 C -0.185 4.185 4 C -0.183 4.183 5 C 0.410 3.590 6 O -0.488 6.488 7 C -0.313 4.313 8 C 0.012 3.988 9 C -0.262 4.262 10 C 0.193 3.807 11 O -0.322 6.322 12 C 0.207 3.793 13 C -0.559 4.559 14 H 0.070 0.930 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.988 3.012 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.263 1.263 21 C -0.218 4.218 22 C 0.233 3.767 23 O -0.303 6.303 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.274 0.726 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.865 5.151 -10.720 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 C -0.242 4.242 4 C -0.221 4.221 5 C 0.291 3.709 6 O -0.367 6.367 7 C -0.315 4.315 8 C -0.006 4.006 9 C -0.281 4.281 10 C 0.144 3.856 11 O -0.234 6.234 12 C 0.134 3.866 13 C -0.596 4.596 14 H 0.088 0.912 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.810 3.190 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.187 1.187 21 C -0.237 4.237 22 C 0.186 3.814 23 O -0.217 6.217 24 H 0.094 0.906 25 H 0.128 0.872 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.144 0.856 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.579 5.185 -10.944 22.177 hybrid contribution 1.384 -0.285 0.571 1.524 sum -17.195 4.901 -10.373 20.671 Atomic orbital electron populations 1.21874 0.87359 1.04665 1.05061 1.22271 0.97757 0.91080 0.81212 1.22560 1.00812 0.95453 1.05373 1.23097 0.91544 1.05943 1.01475 1.22634 0.92606 0.69833 0.85833 1.90529 1.67524 1.39254 1.39388 1.20544 0.95494 1.20109 0.95374 1.20726 0.93431 0.89613 0.96824 1.21102 1.01186 1.13060 0.92787 1.19448 0.92607 0.88500 0.85022 1.86028 1.28493 1.82664 1.26190 1.20373 0.72935 0.94860 0.98463 1.21312 0.94979 1.51324 0.92012 0.91225 1.25943 0.95432 0.93667 1.03610 1.70048 1.03593 1.48038 1.34592 0.85109 0.77669 0.79081 0.77153 1.19169 1.19884 1.18661 1.19683 0.91986 1.14665 0.97374 1.18401 0.82698 0.89102 0.91234 1.85805 1.18117 1.72820 1.44954 0.90602 0.87185 0.90501 0.94415 0.87840 0.90198 0.84618 0.85353 0.83984 0.85623 0.97256 0.97314 0.91674 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.85 71.98 0.64 -0.57 16 2 C 0.11 1.88 1.11 -10.74 -0.01 1.86 16 3 C -0.18 -3.07 8.30 71.99 0.60 -2.47 16 4 C -0.18 -3.04 5.24 30.27 0.16 -2.88 16 5 C 0.41 10.97 5.89 28.37 0.17 11.14 16 6 O -0.49 -15.65 17.41 -3.23 -0.06 -15.71 16 7 C -0.31 -9.75 5.25 -20.00 -0.11 -9.85 16 8 C 0.01 0.42 9.59 22.26 0.21 0.64 16 9 C -0.26 -10.42 8.96 22.13 0.20 -10.22 16 10 C 0.19 8.04 6.69 22.64 0.15 8.19 16 11 O -0.32 -15.82 10.10 -89.85 -0.91 -16.73 16 12 C 0.21 11.27 4.48 71.23 0.32 11.59 16 13 C -0.56 -32.15 9.43 25.60 0.24 -31.91 16 14 H 0.07 3.93 7.81 -2.91 -0.02 3.91 16 15 C 0.01 0.74 5.46 84.66 0.46 1.20 16 16 N -0.92 -53.70 13.29 21.45 0.28 -53.41 16 17 Si 0.99 42.86 29.54 68.60 2.03 44.89 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 21 C -0.22 -7.64 9.91 22.46 0.22 -7.42 16 22 C 0.23 7.07 6.01 22.92 0.14 7.21 16 23 O -0.30 -7.35 9.63 -86.17 -0.83 -8.18 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.04 0.84 6.42 -2.39 -0.02 0.83 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.14 4.52 7.81 -2.91 -0.02 4.50 16 33 H 0.13 5.33 6.25 -2.91 -0.02 5.31 16 34 H 0.01 0.54 7.64 -2.39 -0.02 0.53 16 35 H 0.01 0.51 7.64 -2.38 -0.02 0.49 16 36 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -67.27 313.40 4.98 -62.29 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.08 Total: 10.34 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.39 Total: -23.49 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.28 Total: -53.41 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.79 Total: -40.62 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -67.27 4.98 -62.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154636306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.097 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds