Wall clock time and date at job start Mon Mar 30 2020 01:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46900 * 110.99578 * 306.04553 * 12 2 1 14 14 C 1.46902 * 110.99986 * 69.99637 * 12 2 1 15 15 C 1.50702 * 109.47004 * 170.00406 * 14 12 2 16 16 N 1.27930 * 124.23944 * 89.69669 * 15 14 12 17 17 C 1.34665 * 117.84831 * 179.81522 * 16 15 14 18 18 C 1.40957 * 129.69088 * 180.18409 * 17 16 15 19 19 C 1.36183 * 120.42737 * 180.33548 * 18 17 16 20 20 C 1.38789 * 120.77546 * 359.95439 * 19 18 17 21 21 C 1.37658 * 120.06990 * 0.02562 * 20 19 18 22 22 C 1.39335 * 119.95200 * 359.97438 * 21 20 19 23 23 S 1.70654 * 124.23702 * 270.00340 * 15 14 12 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47375 * 59.99750 * 13 12 2 29 29 H 1.09001 * 109.47293 * 180.02562 * 13 12 2 30 30 H 1.09003 * 109.47189 * 300.00178 * 13 12 2 31 31 H 1.08996 * 109.46774 * 290.00336 * 14 12 2 32 32 H 1.08998 * 109.47182 * 50.00557 * 14 12 2 33 33 H 1.08004 * 119.78654 * 0.30797 * 18 17 16 34 34 H 1.07998 * 119.61171 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.96541 * 180.02562 * 20 19 18 36 36 H 1.07992 * 120.02051 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5161 -3.5795 16 7 1.9811 -1.4153 -4.3422 17 6 2.7424 -1.8714 -5.3550 18 6 2.4502 -2.8420 -6.3345 19 6 3.3745 -3.1676 -7.2801 20 6 4.6182 -2.5519 -7.2992 21 6 4.9311 -1.6001 -6.3553 22 6 3.9979 -1.2542 -5.3801 23 16 4.0653 -0.1036 -4.0490 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 0.3491 -1.9548 -1.3694 29 1 1.8140 -2.5260 -2.2042 30 1 1.7059 -2.6220 -0.4303 31 1 0.6814 0.1054 -2.6087 32 1 2.1025 1.1190 -2.2604 33 1 1.4872 -3.3310 -6.3348 34 1 3.1368 -3.9135 -8.0242 35 1 5.3412 -2.8199 -8.0554 36 1 5.8992 -1.1218 -6.3706 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158978339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:05 Heat of formation + Delta-G solvation = 67.047210 kcal Electronic energy + Delta-G solvation = -18546.629087 eV Core-core repulsion = 15736.556569 eV Total energy + Delta-G solvation = -2810.072518 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29834 -37.77180 -36.37996 -32.86406 -31.16619 -30.53550 -28.57472 -27.37387 -25.25033 -24.63485 -23.49986 -22.24250 -20.68643 -19.24756 -18.40641 -16.59944 -16.24436 -15.63048 -15.39459 -15.11597 -14.64151 -14.10790 -13.94681 -13.77072 -13.45329 -12.70903 -12.54561 -12.33740 -12.03755 -11.80095 -11.57785 -11.07075 -11.03054 -10.82240 -10.81505 -10.67666 -10.49579 -10.10235 -10.06279 -9.95193 -9.41342 -8.94648 -8.57762 -8.41075 -8.07498 -7.28557 -6.03360 -4.06834 0.48821 1.09480 1.39011 1.92188 2.41681 3.29763 3.37773 3.42763 3.67405 4.00324 4.41004 4.59594 4.79919 5.00105 5.11525 5.21139 5.27173 5.29960 5.46169 5.71418 5.84905 5.97375 6.08446 6.21237 6.25271 6.28110 6.42824 6.63079 6.66865 6.80395 6.89715 7.05449 7.36111 7.66255 7.78909 7.79778 8.03690 8.30709 8.50270 8.98891 9.58212 11.03879 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.034349 B = 0.003979 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.958069 B = 7035.865193 C = 7107.626255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.212 3.788 3 H 0.042 0.958 4 C -0.497 4.497 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.527 5.527 13 C 0.034 3.966 14 C 0.116 3.884 15 C 0.128 3.872 16 N -0.476 5.476 17 C 0.090 3.910 18 C -0.069 4.069 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.068 4.068 22 C -0.197 4.197 23 S 0.120 5.880 24 H 0.090 0.910 25 H 0.034 0.966 26 H 0.007 0.993 27 H 0.260 0.740 28 H 0.024 0.976 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.191 -3.762 -17.928 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.059 0.941 4 C -0.536 4.536 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.252 5.252 13 C -0.115 4.115 14 C -0.015 4.015 15 C -0.157 4.157 16 N -0.190 5.190 17 C -0.032 4.032 18 C -0.090 4.090 19 C -0.132 4.132 20 C -0.136 4.136 21 C -0.091 4.091 22 C -0.316 4.316 23 S 0.378 5.622 24 H 0.109 0.891 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.787 -3.132 -17.148 18.368 hybrid contribution -0.906 -0.997 0.233 1.367 sum 4.881 -4.129 -16.916 18.083 Atomic orbital electron populations 1.22427 1.00525 0.99720 1.00635 1.19377 0.90027 0.94530 0.85461 0.94063 1.21102 1.30559 1.12532 0.89392 0.91830 1.24913 0.95202 0.95135 0.98993 1.69887 1.37082 1.23051 1.23373 0.86450 0.78535 0.79683 0.82813 1.19733 1.21032 1.21172 1.62445 1.59102 1.02735 1.00875 1.22266 0.96906 0.91191 1.01095 1.20807 0.97296 0.96857 0.86571 1.26972 0.95089 0.94931 0.98664 1.66298 1.35529 1.12157 1.05047 1.19272 0.89335 0.99054 0.95500 1.20369 1.00222 0.95610 0.92764 1.20663 0.93603 1.00244 0.98657 1.21053 0.97136 0.96682 0.98743 1.20319 0.97839 0.97718 0.93194 1.24035 0.99939 1.04696 1.02937 1.84040 1.16608 1.39245 1.22341 0.89134 0.94716 0.97365 0.93015 0.95772 0.93481 0.90935 0.91930 0.88914 0.85103 0.85156 0.85144 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.22 37.16 0.31 -3.82 16 2 C 0.21 5.20 2.31 -68.86 -0.16 5.04 16 3 H 0.04 1.09 7.93 -51.93 -0.41 0.68 16 4 C -0.50 -13.42 7.97 -34.44 -0.27 -13.69 16 5 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.53 -11.32 4.69 -237.73 -1.12 -12.44 16 13 C 0.03 0.70 8.63 60.06 0.52 1.22 16 14 C 0.12 2.14 5.09 -4.97 -0.03 2.11 16 15 C 0.13 2.21 5.98 -13.90 -0.08 2.13 16 16 N -0.48 -8.35 9.62 -9.08 -0.09 -8.44 16 17 C 0.09 1.40 7.00 -84.96 -0.59 0.80 16 18 C -0.07 -0.86 10.05 -39.29 -0.39 -1.25 16 19 C -0.11 -1.08 9.94 -40.12 -0.40 -1.48 16 20 C -0.11 -1.08 10.04 -39.59 -0.40 -1.47 16 21 C -0.07 -0.77 10.07 -39.39 -0.40 -1.17 16 22 C -0.20 -2.83 6.56 -38.54 -0.25 -3.08 16 23 S 0.12 1.80 23.11 -107.50 -2.48 -0.69 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.03 0.81 6.33 -51.93 -0.33 0.48 16 26 H 0.01 0.16 6.91 -51.93 -0.36 -0.20 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.02 0.50 6.21 -51.93 -0.32 0.17 16 29 H 0.05 0.93 6.47 -51.93 -0.34 0.60 16 30 H 0.07 1.58 6.86 -51.93 -0.36 1.22 16 31 H 0.06 1.16 7.06 -51.93 -0.37 0.79 16 32 H 0.09 1.59 7.93 -51.93 -0.41 1.18 16 33 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -29.26 306.16 -10.12 -39.38 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.41 Total: -1.05 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.25 Total: -13.16 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.58 Total: -45.28 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.48 Total: -0.69 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.26 -10.12 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158978339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.424 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds