Wall clock time and date at job start Mon Mar 30 2020 01:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46900 * 110.99578 * 306.04553 * 12 2 1 14 14 C 1.46902 * 110.99986 * 69.99637 * 12 2 1 15 15 C 1.50702 * 109.47004 * 170.00406 * 14 12 2 16 16 N 1.27930 * 124.23944 * 89.69669 * 15 14 12 17 17 C 1.34665 * 117.84831 * 179.81522 * 16 15 14 18 18 C 1.40957 * 129.69088 * 180.18409 * 17 16 15 19 19 C 1.36183 * 120.42737 * 180.33548 * 18 17 16 20 20 C 1.38789 * 120.77546 * 359.95439 * 19 18 17 21 21 C 1.37658 * 120.06990 * 0.02562 * 20 19 18 22 22 C 1.39335 * 119.95200 * 359.97438 * 21 20 19 23 23 S 1.70654 * 124.23702 * 270.00340 * 15 14 12 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47375 * 59.99750 * 13 12 2 29 29 H 1.09001 * 109.47293 * 180.02562 * 13 12 2 30 30 H 1.09003 * 109.47189 * 300.00178 * 13 12 2 31 31 H 1.08996 * 109.46774 * 290.00336 * 14 12 2 32 32 H 1.08998 * 109.47182 * 50.00557 * 14 12 2 33 33 H 1.08004 * 119.78654 * 0.30797 * 18 17 16 34 34 H 1.07998 * 119.61171 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.96541 * 180.02562 * 20 19 18 36 36 H 1.07992 * 120.02051 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5161 -3.5795 16 7 1.9811 -1.4153 -4.3422 17 6 2.7424 -1.8714 -5.3550 18 6 2.4502 -2.8420 -6.3345 19 6 3.3745 -3.1676 -7.2801 20 6 4.6182 -2.5519 -7.2992 21 6 4.9311 -1.6001 -6.3553 22 6 3.9979 -1.2542 -5.3801 23 16 4.0653 -0.1036 -4.0490 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 0.3491 -1.9548 -1.3694 29 1 1.8140 -2.5260 -2.2042 30 1 1.7059 -2.6220 -0.4303 31 1 0.6814 0.1054 -2.6087 32 1 2.1025 1.1190 -2.2604 33 1 1.4872 -3.3310 -6.3348 34 1 3.1368 -3.9135 -8.0242 35 1 5.3412 -2.8199 -8.0554 36 1 5.8992 -1.1218 -6.3706 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158978339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:05 Heat of formation + Delta-G solvation = 49.348021 kcal Electronic energy + Delta-G solvation = -18547.396581 eV Core-core repulsion = 15736.556569 eV Total energy + Delta-G solvation = -2810.840012 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35665 -39.27441 -37.64080 -34.81188 -32.04967 -31.95615 -30.18382 -28.82423 -27.29634 -26.13102 -24.67047 -23.33210 -21.98812 -20.94044 -19.47369 -18.25665 -17.57634 -17.26369 -16.54915 -16.39337 -16.07849 -15.45379 -15.36778 -15.14225 -14.78624 -14.42103 -14.07059 -13.54216 -13.31946 -13.10138 -12.90415 -12.85976 -12.71370 -12.51726 -12.46632 -12.29235 -12.07135 -11.85923 -11.79236 -11.09379 -10.96563 -10.63902 -10.49368 -9.62224 -9.11620 -8.99409 -8.11013 -6.21295 -0.57788 0.20634 0.28860 0.77794 1.34440 1.42120 1.44579 1.56017 2.43402 2.72572 2.85290 3.18591 3.43889 3.65301 3.92608 4.12407 4.23369 4.33766 4.39685 4.45495 4.53176 4.67887 4.70594 4.78705 4.88832 4.95983 5.09081 5.10652 5.22128 5.30041 5.44430 5.46654 5.68396 5.75791 5.82912 6.12347 6.37678 6.58923 6.63525 6.89597 7.47398 8.95352 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.034349 B = 0.003979 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.958069 B = 7035.865193 C = 7107.626255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.217 3.783 3 H 0.019 0.981 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.534 5.534 13 C 0.047 3.953 14 C 0.122 3.878 15 C 0.098 3.902 16 N -0.491 5.491 17 C 0.049 3.951 18 C -0.083 4.083 19 C -0.099 4.099 20 C -0.094 4.094 21 C -0.080 4.080 22 C -0.207 4.207 23 S 0.127 5.873 24 H 0.066 0.934 25 H 0.032 0.968 26 H 0.026 0.974 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 -5.210 -20.149 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.110 3.890 3 H 0.036 0.964 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.259 5.259 13 C -0.101 4.101 14 C -0.009 4.009 15 C -0.186 4.186 16 N -0.206 5.206 17 C -0.071 4.071 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.103 4.103 22 C -0.326 4.326 23 S 0.384 5.616 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.187 0.813 35 H 0.191 0.809 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.219 -4.584 -19.385 21.187 hybrid contribution -1.281 -0.627 0.689 1.584 sum 5.938 -5.211 -18.695 20.296 Atomic orbital electron populations 1.22230 1.00034 0.99385 1.00285 1.19140 0.90259 0.93280 0.86296 0.96361 1.21323 1.30651 1.12446 0.90737 0.92804 1.25627 0.95353 0.95789 1.01625 1.69998 1.37775 1.24042 1.24031 0.85502 0.78054 0.78627 0.79409 1.19528 1.20545 1.20697 1.62284 1.59209 1.03093 1.01270 1.22110 0.96642 0.90760 1.00612 1.20692 0.97421 0.96864 0.85888 1.26546 0.96502 0.96455 0.99108 1.66217 1.36754 1.12058 1.05616 1.19644 0.90057 1.00999 0.96403 1.20686 1.01514 0.95309 0.92926 1.21169 0.92878 0.99949 0.97929 1.21626 0.97501 0.94369 0.98067 1.20762 0.98273 0.98466 0.92806 1.24274 1.00417 1.04484 1.03375 1.83795 1.14926 1.39776 1.23073 0.91551 0.94910 0.95495 0.92881 0.95951 0.92722 0.92423 0.92435 0.88377 0.84498 0.81296 0.80892 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.77 8.22 71.98 0.59 -7.18 16 2 C 0.22 10.96 2.31 44.17 0.10 11.06 16 3 H 0.02 1.01 7.93 -2.39 -0.02 0.99 16 4 C -0.51 -28.28 7.97 25.60 0.20 -28.08 16 5 H 0.05 3.01 7.10 -2.91 -0.02 2.99 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.22 11.32 21.45 0.24 -51.98 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 N -0.53 -23.58 4.69 -906.04 -4.25 -27.83 16 13 C 0.05 2.00 8.63 127.69 1.10 3.10 16 14 C 0.12 4.65 5.09 85.56 0.44 5.08 16 15 C 0.10 3.46 5.98 88.68 0.53 3.99 16 16 N -0.49 -17.46 9.62 -182.51 -1.75 -19.22 16 17 C 0.05 1.49 7.00 39.78 0.28 1.77 16 18 C -0.08 -1.92 10.05 22.46 0.23 -1.69 16 19 C -0.10 -1.51 9.94 21.92 0.22 -1.29 16 20 C -0.09 -1.32 10.04 22.26 0.22 -1.09 16 21 C -0.08 -1.56 10.07 22.40 0.23 -1.34 16 22 C -0.21 -5.68 6.56 22.94 0.15 -5.53 16 23 S 0.13 3.82 23.11 -56.49 -1.31 2.51 16 24 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 25 H 0.03 1.55 6.33 -2.39 -0.02 1.54 16 26 H 0.03 1.16 6.91 -2.38 -0.02 1.14 16 27 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.02 0.93 6.21 -2.39 -0.01 0.92 16 29 H 0.05 2.22 6.47 -2.39 -0.02 2.20 16 30 H 0.06 2.57 6.86 -2.39 -0.02 2.56 16 31 H 0.06 2.20 7.06 -2.39 -0.02 2.18 16 32 H 0.10 3.51 7.93 -2.39 -0.02 3.49 16 33 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -64.40 306.16 0.78 -63.62 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.09 Total: 6.96 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 4.74 Total: -19.92 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -5.76 Total: -99.03 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.31 Total: 2.51 kcal Total: -64.40 0.78 -63.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158978339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.971 kcal (2) G-P(sol) polarization free energy of solvation -64.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds