Wall clock time and date at job start Mon Mar 30 2020 01:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46821 * 2 1 4 4 C 1.50698 * 109.46820 * 240.00292 * 2 1 3 5 5 H 1.08006 * 120.00311 * 354.67576 * 4 2 1 6 6 C 1.37876 * 119.99966 * 174.68558 * 4 2 1 7 7 N 1.31516 * 120.00331 * 180.79591 * 6 4 2 8 8 Si 1.86804 * 119.99743 * 0.79723 * 6 4 2 9 9 H 1.48492 * 109.47241 * 84.88945 * 8 6 4 10 10 H 1.48509 * 109.46963 * 204.89273 * 8 6 4 11 11 H 1.48498 * 109.46893 * 324.88602 * 8 6 4 12 12 N 1.46894 * 109.46924 * 119.99743 * 2 1 3 13 13 C 1.46904 * 110.99969 * 58.95819 * 12 2 1 14 14 C 1.46898 * 111.00371 * 295.00207 * 12 2 1 15 15 C 1.50703 * 109.47021 * 190.00056 * 14 12 2 16 16 N 1.27933 * 124.23573 * 89.70212 * 15 14 12 17 17 C 1.34661 * 117.84193 * 179.81071 * 16 15 14 18 18 C 1.40968 * 129.68721 * 180.17050 * 17 16 15 19 19 C 1.36179 * 120.42436 * 180.33677 * 18 17 16 20 20 C 1.38791 * 120.78078 * 359.96261 * 19 18 17 21 21 C 1.37654 * 120.06703 * 0.02562 * 20 19 18 22 22 C 1.39339 * 119.95194 * 0.02562 * 21 20 19 23 23 S 1.70643 * 124.23895 * 269.99781 * 15 14 12 24 24 H 1.09002 * 109.47089 * 53.58409 * 1 2 3 25 25 H 1.08999 * 109.47110 * 293.59198 * 1 2 3 26 26 H 1.08998 * 109.47477 * 173.59033 * 1 2 3 27 27 H 0.96999 * 120.00178 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47390 * 59.99561 * 13 12 2 29 29 H 1.09000 * 109.47153 * 179.97438 * 13 12 2 30 30 H 1.09005 * 109.46788 * 299.99440 * 13 12 2 31 31 H 1.09000 * 109.47006 * 309.99876 * 14 12 2 32 32 H 1.08996 * 109.47341 * 69.99807 * 14 12 2 33 33 H 1.07998 * 119.78887 * 0.32209 * 18 17 16 34 34 H 1.08003 * 119.61305 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.96496 * 180.02562 * 20 19 18 36 36 H 1.07993 * 120.02483 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 1.3342 -1.1953 -1.8969 6 6 3.3830 -0.7414 -1.5055 7 7 3.8200 -1.3479 -2.5876 8 14 4.5923 0.0779 -0.3411 9 1 4.9365 -0.8613 0.7564 10 1 5.8248 0.4438 -1.0844 11 1 3.9769 1.3027 0.2302 12 7 2.0196 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0392 2.4180 15 6 2.3679 -0.5571 3.6005 16 7 3.5204 -0.1792 4.0074 17 6 4.0426 -0.8001 5.0822 18 6 5.2734 -0.5863 5.7355 19 6 5.6195 -1.3377 6.8173 20 6 4.7704 -2.3250 7.2973 21 6 3.5621 -2.5558 6.6795 22 6 3.1917 -1.7975 5.5707 23 16 1.7502 -1.8259 4.5600 24 1 -0.3633 0.6101 -0.8270 25 1 -0.3633 0.4113 0.9418 26 1 -0.3634 -1.0212 -0.1147 27 1 4.7702 -1.3694 -2.7812 28 1 1.8762 -2.6150 0.3647 29 1 1.9060 -2.5658 2.1435 30 1 0.4384 -2.0742 1.2639 31 1 1.9297 1.0870 2.3125 32 1 0.5722 -0.0344 2.5726 33 1 5.9462 0.1780 5.3757 34 1 6.5658 -1.1631 7.3076 35 1 5.0580 -2.9129 8.1564 36 1 2.9022 -3.3245 7.0533 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158978502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:07 Heat of formation + Delta-G solvation = 68.031460 kcal Electronic energy + Delta-G solvation = -18977.136707 eV Core-core repulsion = 16167.106869 eV Total energy + Delta-G solvation = -2810.029838 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28728 -37.89258 -36.51708 -32.54897 -31.17182 -30.86318 -29.24376 -27.31210 -25.56339 -24.74070 -23.42260 -22.28865 -20.48235 -19.17788 -18.44238 -16.83753 -16.54946 -15.66771 -15.47165 -15.22236 -14.43252 -14.17808 -14.09056 -13.68025 -13.50097 -13.00237 -12.56714 -12.47789 -12.14217 -11.93517 -11.85106 -11.37828 -11.16918 -11.05146 -10.86853 -10.64644 -10.47413 -10.05431 -9.96002 -9.61563 -9.43088 -9.12877 -8.60679 -8.51093 -8.07552 -7.37108 -6.03636 -4.11194 0.46867 1.09117 1.33402 1.83093 2.42459 3.57405 3.62242 3.68087 3.78409 4.00558 4.58132 4.63430 4.77955 4.84883 5.03373 5.19345 5.25494 5.44856 5.48105 5.61534 5.82788 5.90589 6.04075 6.07207 6.17988 6.21479 6.22298 6.27875 6.28301 6.43783 6.64126 6.74114 6.94338 7.15495 7.59466 7.81879 7.91741 8.09593 8.54014 8.96017 9.60928 11.05443 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.005966 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.697620 B = 4692.214960 C = 5387.223701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.049 0.951 4 C -0.512 4.512 5 H 0.073 0.927 6 C 0.085 3.915 7 N -0.897 5.897 8 Si 0.917 3.083 9 H -0.272 1.272 10 H -0.313 1.313 11 H -0.272 1.272 12 N -0.528 5.528 13 C 0.028 3.972 14 C 0.111 3.889 15 C 0.128 3.872 16 N -0.462 5.462 17 C 0.090 3.910 18 C -0.066 4.066 19 C -0.110 4.110 20 C -0.112 4.112 21 C -0.070 4.070 22 C -0.190 4.190 23 S 0.089 5.911 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.264 0.736 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.020 0.980 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -0.935 19.601 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.067 3.933 3 H 0.066 0.934 4 C -0.550 4.550 5 H 0.091 0.909 6 C -0.120 4.120 7 N -0.534 5.534 8 Si 0.748 3.252 9 H -0.197 1.197 10 H -0.241 1.241 11 H -0.197 1.197 12 N -0.254 5.254 13 C -0.120 4.120 14 C -0.020 4.020 15 C -0.158 4.158 16 N -0.174 5.174 17 C -0.031 4.031 18 C -0.087 4.087 19 C -0.131 4.131 20 C -0.134 4.134 21 C -0.092 4.092 22 C -0.309 4.309 23 S 0.346 5.654 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.812 -1.106 19.085 19.202 hybrid contribution 0.740 0.467 0.931 1.277 sum -1.073 -0.639 20.016 20.055 Atomic orbital electron populations 1.22306 0.99684 1.01125 0.99318 1.19947 0.89969 0.95593 0.87775 0.93363 1.20836 0.93153 1.36199 1.04798 0.90861 1.25023 0.98720 0.93836 0.94393 1.69950 1.14980 1.42759 1.25667 0.86191 0.78365 0.80667 0.80026 1.19746 1.24147 1.19688 1.62813 1.59770 1.02558 1.00256 1.22325 0.96750 0.90656 1.02285 1.20908 0.95182 0.99236 0.86724 1.26980 0.93214 0.95910 0.99682 1.66195 1.10280 1.29194 1.11779 1.19314 0.96663 0.94077 0.93069 1.20416 0.93560 0.99913 0.94826 1.20676 1.00046 0.95983 0.96409 1.21062 0.93720 0.98440 1.00150 1.20306 0.97071 0.98417 0.93442 1.23948 0.99818 1.03820 1.03339 1.83887 1.19309 1.38187 1.24011 0.92787 0.95154 0.93022 0.92670 0.89337 0.93828 0.96148 0.88291 0.92637 0.84941 0.85029 0.85052 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 8.38 37.16 0.31 -2.84 16 2 C 0.17 3.90 1.70 -68.87 -0.12 3.79 16 3 H 0.05 1.14 6.81 -51.93 -0.35 0.79 16 4 C -0.51 -13.96 7.82 -34.44 -0.27 -14.23 16 5 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 6 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 7 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 8 Si 0.92 24.24 26.25 -169.99 -4.46 19.78 16 9 H -0.27 -7.47 7.11 56.52 0.40 -7.06 16 10 H -0.31 -8.32 7.11 56.52 0.40 -7.92 16 11 H -0.27 -6.98 6.52 56.52 0.37 -6.62 16 12 N -0.53 -11.34 2.76 -237.73 -0.66 -12.00 16 13 C 0.03 0.56 8.66 60.07 0.52 1.08 16 14 C 0.11 2.01 4.97 -4.98 -0.02 1.99 16 15 C 0.13 2.30 6.10 -13.90 -0.08 2.22 16 16 N -0.46 -8.95 10.57 -9.08 -0.10 -9.05 16 17 C 0.09 1.52 7.00 -84.96 -0.59 0.92 16 18 C -0.07 -0.92 10.05 -39.29 -0.39 -1.31 16 19 C -0.11 -1.17 9.94 -40.12 -0.40 -1.57 16 20 C -0.11 -1.12 10.04 -39.59 -0.40 -1.52 16 21 C -0.07 -0.82 10.07 -39.39 -0.40 -1.22 16 22 C -0.19 -2.86 6.56 -38.54 -0.25 -3.12 16 23 S 0.09 1.33 21.43 -107.50 -2.30 -0.97 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.03 0.49 6.46 -51.93 -0.34 0.16 16 26 H 0.05 0.98 6.75 -51.93 -0.35 0.63 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.09 2.01 7.12 -51.93 -0.37 1.64 16 29 H 0.04 0.81 5.77 -51.93 -0.30 0.51 16 30 H 0.02 0.36 6.43 -51.93 -0.33 0.03 16 31 H 0.10 1.80 8.00 -51.93 -0.42 1.39 16 32 H 0.06 0.87 6.79 -51.93 -0.35 0.52 16 33 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -32.14 303.26 -8.88 -41.03 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.51 Total: -3.24 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.20 Total: -13.45 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.02 Total: -47.71 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.46 Total: 19.78 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.30 Total: -0.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.14 -8.88 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158978502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.059 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds