Wall clock time and date at job start Mon Mar 30 2020 01:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46821 * 2 1 4 4 C 1.50698 * 109.46820 * 240.00292 * 2 1 3 5 5 H 1.08006 * 120.00311 * 354.67576 * 4 2 1 6 6 C 1.37876 * 119.99966 * 174.68558 * 4 2 1 7 7 N 1.31516 * 120.00331 * 180.79591 * 6 4 2 8 8 Si 1.86804 * 119.99743 * 0.79723 * 6 4 2 9 9 H 1.48492 * 109.47241 * 84.88945 * 8 6 4 10 10 H 1.48509 * 109.46963 * 204.89273 * 8 6 4 11 11 H 1.48498 * 109.46893 * 324.88602 * 8 6 4 12 12 N 1.46894 * 109.46924 * 119.99743 * 2 1 3 13 13 C 1.46904 * 110.99969 * 58.95819 * 12 2 1 14 14 C 1.46898 * 111.00371 * 295.00207 * 12 2 1 15 15 C 1.50703 * 109.47021 * 190.00056 * 14 12 2 16 16 N 1.27933 * 124.23573 * 89.70212 * 15 14 12 17 17 C 1.34661 * 117.84193 * 179.81071 * 16 15 14 18 18 C 1.40968 * 129.68721 * 180.17050 * 17 16 15 19 19 C 1.36179 * 120.42436 * 180.33677 * 18 17 16 20 20 C 1.38791 * 120.78078 * 359.96261 * 19 18 17 21 21 C 1.37654 * 120.06703 * 0.02562 * 20 19 18 22 22 C 1.39339 * 119.95194 * 0.02562 * 21 20 19 23 23 S 1.70643 * 124.23895 * 269.99781 * 15 14 12 24 24 H 1.09002 * 109.47089 * 53.58409 * 1 2 3 25 25 H 1.08999 * 109.47110 * 293.59198 * 1 2 3 26 26 H 1.08998 * 109.47477 * 173.59033 * 1 2 3 27 27 H 0.96999 * 120.00178 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47390 * 59.99561 * 13 12 2 29 29 H 1.09000 * 109.47153 * 179.97438 * 13 12 2 30 30 H 1.09005 * 109.46788 * 299.99440 * 13 12 2 31 31 H 1.09000 * 109.47006 * 309.99876 * 14 12 2 32 32 H 1.08996 * 109.47341 * 69.99807 * 14 12 2 33 33 H 1.07998 * 119.78887 * 0.32209 * 18 17 16 34 34 H 1.08003 * 119.61305 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.96496 * 180.02562 * 20 19 18 36 36 H 1.07993 * 120.02483 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 1.3342 -1.1953 -1.8969 6 6 3.3830 -0.7414 -1.5055 7 7 3.8200 -1.3479 -2.5876 8 14 4.5923 0.0779 -0.3411 9 1 4.9365 -0.8613 0.7564 10 1 5.8248 0.4438 -1.0844 11 1 3.9769 1.3027 0.2302 12 7 2.0196 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0392 2.4180 15 6 2.3679 -0.5571 3.6005 16 7 3.5204 -0.1792 4.0074 17 6 4.0426 -0.8001 5.0822 18 6 5.2734 -0.5863 5.7355 19 6 5.6195 -1.3377 6.8173 20 6 4.7704 -2.3250 7.2973 21 6 3.5621 -2.5558 6.6795 22 6 3.1917 -1.7975 5.5707 23 16 1.7502 -1.8259 4.5600 24 1 -0.3633 0.6101 -0.8270 25 1 -0.3633 0.4113 0.9418 26 1 -0.3634 -1.0212 -0.1147 27 1 4.7702 -1.3694 -2.7812 28 1 1.8762 -2.6150 0.3647 29 1 1.9060 -2.5658 2.1435 30 1 0.4384 -2.0742 1.2639 31 1 1.9297 1.0870 2.3125 32 1 0.5722 -0.0344 2.5726 33 1 5.9462 0.1780 5.3757 34 1 6.5658 -1.1631 7.3076 35 1 5.0580 -2.9129 8.1564 36 1 2.9022 -3.3245 7.0533 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158978502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:06 Heat of formation + Delta-G solvation = 47.181016 kcal Electronic energy + Delta-G solvation = -18978.040850 eV Core-core repulsion = 16167.106869 eV Total energy + Delta-G solvation = -2810.933981 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37637 -39.39704 -37.72811 -34.61200 -32.41315 -32.09868 -30.62588 -28.69294 -27.44463 -26.23967 -24.59924 -23.38341 -21.80878 -20.85867 -19.53213 -18.90620 -17.60246 -17.14409 -16.75877 -16.37538 -16.03922 -15.57113 -15.42026 -15.06824 -14.91128 -14.72773 -14.30460 -13.69089 -13.46285 -13.26897 -12.99550 -12.83528 -12.77853 -12.72658 -12.42954 -12.25200 -11.87685 -11.86573 -11.71162 -11.14252 -11.08803 -10.79367 -10.62870 -9.66480 -9.12358 -8.98112 -8.28649 -6.35916 -0.62489 0.15317 0.22873 0.66302 1.32111 1.40305 1.48585 1.61808 2.44012 2.66968 2.83497 3.02391 3.52687 3.60836 3.90652 4.08311 4.17825 4.28928 4.34399 4.41516 4.45312 4.61367 4.62191 4.66079 4.74725 4.81710 4.91043 5.11908 5.14787 5.25131 5.31227 5.39460 5.45158 5.62600 5.78582 6.03864 6.35223 6.51352 6.64828 6.78325 7.38566 8.84265 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.005966 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.697620 B = 4692.214960 C = 5387.223701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.043 0.957 6 C 0.040 3.960 7 N -0.943 5.943 8 Si 0.972 3.028 9 H -0.289 1.289 10 H -0.317 1.317 11 H -0.261 1.261 12 N -0.551 5.551 13 C 0.038 3.962 14 C 0.116 3.884 15 C 0.094 3.906 16 N -0.496 5.496 17 C 0.045 3.955 18 C -0.089 4.089 19 C -0.098 4.098 20 C -0.093 4.093 21 C -0.078 4.078 22 C -0.205 4.205 23 S 0.125 5.875 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.263 0.737 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -1.418 23.406 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 H 0.059 0.941 4 C -0.539 4.539 5 H 0.061 0.939 6 C -0.160 4.160 7 N -0.583 5.583 8 Si 0.803 3.197 9 H -0.216 1.216 10 H -0.246 1.246 11 H -0.186 1.186 12 N -0.278 5.278 13 C -0.111 4.111 14 C -0.015 4.015 15 C -0.191 4.191 16 N -0.211 5.211 17 C -0.074 4.074 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.101 4.101 22 C -0.324 4.324 23 S 0.382 5.618 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.150 0.850 34 H 0.187 0.813 35 H 0.194 0.806 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.089 -1.574 22.899 23.048 hybrid contribution 0.846 0.540 -0.040 1.005 sum -1.243 -1.033 22.859 22.916 Atomic orbital electron populations 1.22176 0.96663 1.01423 1.01278 1.19758 0.92442 0.94342 0.86657 0.94100 1.21112 0.92238 1.34575 1.06020 0.93877 1.25596 1.00319 0.94764 0.95311 1.70049 1.15139 1.45446 1.27625 0.85316 0.76748 0.79852 0.77786 1.21609 1.24588 1.18604 1.62353 1.60872 1.03289 1.01274 1.22204 0.98069 0.89659 1.01128 1.20853 0.96867 0.98394 0.85381 1.26808 0.93713 0.97877 1.00660 1.66141 1.11172 1.30593 1.13152 1.19680 0.98410 0.95650 0.93675 1.20710 0.92983 1.01131 0.96152 1.21168 1.01330 0.94600 0.94742 1.21649 0.92236 0.97356 1.00224 1.20787 0.98355 0.98506 0.92446 1.24264 0.99538 1.04151 1.04447 1.83493 1.18936 1.36292 1.23082 0.92571 0.91830 0.93172 0.92808 0.92896 0.92602 0.93823 0.88909 0.89781 0.85029 0.81337 0.80638 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.69 8.38 71.98 0.60 -5.09 16 2 C 0.17 7.83 1.70 44.17 0.08 7.91 16 3 H 0.04 1.92 6.81 -2.39 -0.02 1.90 16 4 C -0.50 -27.99 7.82 25.60 0.20 -27.79 16 5 H 0.04 2.62 7.99 -2.91 -0.02 2.60 16 6 C 0.04 2.36 5.47 84.65 0.46 2.82 16 7 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 8 Si 0.97 51.76 26.25 68.60 1.80 53.56 16 9 H -0.29 -16.11 7.11 99.48 0.71 -15.41 16 10 H -0.32 -16.84 7.11 99.48 0.71 -16.13 16 11 H -0.26 -13.28 6.52 99.48 0.65 -12.63 16 12 N -0.55 -23.45 2.76 -906.04 -2.50 -25.95 16 13 C 0.04 1.48 8.66 127.69 1.11 2.59 16 14 C 0.12 4.07 4.97 85.56 0.43 4.49 16 15 C 0.09 3.33 6.10 88.68 0.54 3.87 16 16 N -0.50 -19.28 10.57 -182.51 -1.93 -21.21 16 17 C 0.05 1.51 7.00 39.79 0.28 1.78 16 18 C -0.09 -2.33 10.05 22.46 0.23 -2.10 16 19 C -0.10 -1.70 9.94 21.92 0.22 -1.49 16 20 C -0.09 -1.40 10.04 22.26 0.22 -1.18 16 21 C -0.08 -1.55 10.07 22.40 0.23 -1.33 16 22 C -0.21 -5.78 6.56 22.94 0.15 -5.63 16 23 S 0.13 3.52 21.43 -56.49 -1.21 2.31 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 1.88 6.46 -2.39 -0.02 1.87 16 26 H 0.05 1.82 6.75 -2.39 -0.02 1.81 16 27 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 28 H 0.05 2.45 7.12 -2.39 -0.02 2.43 16 29 H 0.06 2.04 5.77 -2.39 -0.01 2.02 16 30 H 0.04 1.49 6.43 -2.38 -0.02 1.48 16 31 H 0.09 3.31 8.00 -2.39 -0.02 3.29 16 32 H 0.08 2.41 6.79 -2.39 -0.02 2.40 16 33 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 34 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -73.19 303.26 2.22 -70.97 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: 1.03 Total: 0.89 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 4.74 Total: -21.13 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -4.13 Total: -106.60 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 1.80 Total: 53.56 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.21 Total: 2.31 kcal Total: -73.19 2.22 -70.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158978502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.154 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds