Wall clock time and date at job start Mon Mar 30 2020 01:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 119.99702 * 2 1 4 4 H 1.08001 * 120.00091 * 202.34598 * 3 2 1 5 5 C 1.38811 * 119.99874 * 22.35682 * 3 2 1 6 6 N 1.31619 * 120.00538 * 11.32851 * 5 3 2 7 7 Si 1.86808 * 119.99558 * 191.33349 * 5 3 2 8 8 H 1.48502 * 109.47210 * 59.99826 * 7 5 3 9 9 H 1.48501 * 109.46968 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47118 * 299.99243 * 7 5 3 11 11 C 1.46493 * 119.99739 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.46940 * 269.99365 * 11 2 1 13 13 N 1.30351 * 125.47921 * 89.69555 * 12 11 2 14 14 C 1.34157 * 108.90270 * 179.89508 * 13 12 11 15 15 C 1.35777 * 107.51498 * 0.36641 * 14 13 12 16 16 C 1.47821 * 126.58380 * 179.77604 * 15 14 13 17 17 C 1.39553 * 120.15657 * 309.70536 * 16 15 14 18 18 C 1.37954 * 119.87628 * 179.69677 * 17 16 15 19 19 C 1.38376 * 120.19355 * 0.59912 * 18 17 16 20 20 C 1.38300 * 120.31612 * 359.67544 * 19 18 17 21 21 C 1.38208 * 120.12173 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.10395 * 179.97438 * 21 20 19 23 23 O 1.34017 * 125.48605 * 270.00345 * 12 11 2 24 24 H 1.08997 * 109.47246 * 274.20929 * 1 2 3 25 25 H 1.09002 * 109.47215 * 34.21240 * 1 2 3 26 26 H 1.09007 * 109.47305 * 154.21384 * 1 2 3 27 27 H 0.96994 * 120.00342 * 180.02562 * 6 5 3 28 28 H 1.08994 * 109.48050 * 29.99955 * 11 2 1 29 29 H 1.09001 * 109.47245 * 150.00181 * 11 2 1 30 30 H 1.07997 * 126.24412 * 180.17043 * 14 13 12 31 31 H 1.08001 * 120.06108 * 359.97438 * 17 16 15 32 32 H 1.08006 * 119.90223 * 180.29615 * 18 17 16 33 33 H 1.08005 * 119.84599 * 179.69694 * 19 18 17 34 34 H 1.08004 * 119.93997 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3428 0.4573 6 7 0.3840 2.2690 1.0937 7 14 2.3367 4.0047 0.1692 8 1 2.4917 4.2334 -1.2899 9 1 1.4845 5.0735 0.7495 10 1 3.6720 4.0285 0.8186 11 6 2.1974 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 7 1.6529 -2.4490 2.1351 14 6 2.2008 -2.6329 3.3458 15 6 3.3804 -1.9609 3.3668 16 6 4.3265 -1.8771 4.4994 17 6 3.8700 -1.5218 5.7694 18 6 4.7570 -1.4514 6.8237 19 6 6.0995 -1.7199 6.6228 20 6 6.5615 -2.0672 5.3664 21 6 5.6834 -2.1477 4.3022 22 9 6.1353 -2.4865 3.0749 23 8 3.5234 -1.3835 2.1536 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8498 -0.5778 26 1 -0.3634 -0.9254 -0.4471 27 1 -0.0465 3.0774 1.4129 28 1 1.6085 -2.0282 -0.5147 29 1 3.1499 -1.1382 -0.5143 30 1 1.7789 -3.2076 4.1570 31 1 2.8235 -1.3067 5.9275 32 1 4.4033 -1.1811 7.8078 33 1 6.7897 -1.6584 7.4512 34 1 7.6106 -2.2760 5.2166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159983274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:48 Heat of formation + Delta-G solvation = 30.016119 kcal Electronic energy + Delta-G solvation = -20711.922703 eV Core-core repulsion = 17334.031220 eV Total energy + Delta-G solvation = -3377.891483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.84191 -42.47580 -38.90464 -35.75449 -33.97831 -32.59365 -31.47151 -30.66999 -28.81316 -26.31602 -25.79390 -23.44181 -22.69234 -21.77315 -21.18213 -20.17340 -17.85748 -16.92349 -16.78974 -16.40794 -15.76652 -15.66171 -15.48001 -14.81617 -14.55744 -13.93409 -13.73249 -13.52917 -13.18833 -13.09774 -12.81834 -12.36829 -12.06326 -11.80625 -11.34541 -11.24246 -10.95402 -10.78575 -10.61958 -10.44675 -10.13604 -10.04085 -9.93635 -9.37159 -8.91729 -8.68206 -7.88998 -7.01820 -5.86860 -3.35087 0.79447 1.06540 2.13207 3.16750 3.33268 3.35874 3.38524 3.41524 3.60964 4.14221 4.40951 4.62186 4.66436 4.80261 4.99711 5.06758 5.18508 5.36372 5.49608 5.55305 5.65567 5.88657 5.90503 6.07888 6.16716 6.19475 6.32823 6.40557 6.61891 6.73003 6.74002 6.98387 7.31369 7.67194 7.73728 8.22403 8.47509 9.06999 9.65855 10.13655 11.16647 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.005343 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.016531 B = 5238.990932 C = 5816.324346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.574 5.574 3 C -0.269 4.269 4 H 0.076 0.924 5 C 0.010 3.990 6 N -0.898 5.898 7 Si 0.911 3.089 8 H -0.279 1.279 9 H -0.288 1.288 10 H -0.281 1.281 11 C 0.225 3.775 12 C 0.217 3.783 13 N -0.505 5.505 14 C -0.007 4.007 15 C -0.057 4.057 16 C -0.030 4.030 17 C -0.068 4.068 18 C -0.130 4.130 19 C -0.089 4.089 20 C -0.156 4.156 21 C 0.117 3.883 22 F -0.130 7.130 23 O -0.185 6.185 24 H 0.032 0.968 25 H 0.052 0.948 26 H 0.006 0.994 27 H 0.257 0.743 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.175 0.825 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.730 -8.943 9.534 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.294 5.294 3 C -0.398 4.398 4 H 0.093 0.907 5 C -0.190 4.190 6 N -0.541 5.541 7 Si 0.740 3.260 8 H -0.206 1.206 9 H -0.214 1.214 10 H -0.207 1.207 11 C 0.093 3.907 12 C 0.007 3.993 13 N -0.234 5.234 14 C -0.148 4.148 15 C -0.111 4.111 16 C -0.031 4.031 17 C -0.086 4.086 18 C -0.148 4.148 19 C -0.107 4.107 20 C -0.175 4.175 21 C 0.098 3.902 22 F -0.108 7.108 23 O -0.071 6.071 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.192 0.808 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.043 -8.966 9.253 15.189 hybrid contribution 1.018 1.214 0.384 1.631 sum 9.061 -7.752 9.637 15.332 Atomic orbital electron populations 1.20928 0.81228 0.96301 0.99897 1.44373 1.02681 1.00017 1.82315 1.19307 0.98726 0.84721 1.37077 0.90654 1.25163 0.97459 0.99043 0.97363 1.70087 1.17477 1.27745 1.38819 0.86240 0.78647 0.82956 0.78171 1.20557 1.21413 1.20682 1.19990 0.98085 0.89667 0.82918 1.29557 0.79819 0.90713 0.99170 1.70360 1.30313 1.19080 1.03626 1.23176 0.92515 1.02395 0.96672 1.20926 0.99204 1.04325 0.86667 1.17724 0.89881 1.03935 0.91603 1.21171 1.00906 0.96166 0.90337 1.21119 0.93203 1.01271 0.99185 1.21086 0.95880 0.97510 0.96254 1.21074 1.00010 1.04127 0.92259 1.17853 0.91701 0.99977 0.80717 1.91531 1.89250 1.89327 1.40687 1.84604 1.42901 1.58390 1.21227 0.94955 0.92958 0.97507 0.93307 0.89316 0.90551 0.80808 0.84401 0.84808 0.84850 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 9.01 59.85 0.54 4.56 16 2 N -0.57 -14.66 2.91 -182.51 -0.53 -15.19 16 3 C -0.27 -7.41 9.67 -15.06 -0.15 -7.56 16 4 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 5 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 6 N -0.90 -26.27 10.58 55.49 0.59 -25.68 16 7 Si 0.91 21.84 29.57 -169.99 -5.03 16.82 16 8 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.22 4.83 6.33 -5.20 -0.03 4.79 16 12 C 0.22 4.91 7.91 -12.90 -0.10 4.80 16 13 N -0.50 -11.11 11.27 -10.81 -0.12 -11.23 16 14 C -0.01 -0.13 11.78 -17.42 -0.21 -0.34 16 15 C -0.06 -1.13 6.43 -36.54 -0.23 -1.36 16 16 C -0.03 -0.48 5.81 -104.92 -0.61 -1.09 16 17 C -0.07 -0.88 9.72 -39.20 -0.38 -1.26 16 18 C -0.13 -1.30 10.03 -39.63 -0.40 -1.70 16 19 C -0.09 -0.84 10.04 -39.51 -0.40 -1.24 16 20 C -0.16 -1.77 10.01 -39.57 -0.40 -2.17 16 21 C 0.12 1.77 7.28 -39.03 -0.28 1.49 16 22 F -0.13 -2.20 16.82 2.25 0.04 -2.16 16 23 O -0.19 -4.25 10.79 4.19 0.05 -4.21 16 24 H 0.03 0.89 7.42 -51.93 -0.39 0.51 16 25 H 0.05 1.37 7.19 -51.93 -0.37 1.00 16 26 H 0.01 0.14 7.84 -51.93 -0.41 -0.27 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 28 H 0.09 1.67 7.86 -51.93 -0.41 1.26 16 29 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 30 H 0.17 2.64 8.06 -52.49 -0.42 2.21 16 31 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -32.82 307.20 -6.77 -39.59 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -3.65 Total: -1.69 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.74 Total: -0.88 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.07 Total: -52.10 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.05 Total: -4.21 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.82 -6.77 -39.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159983274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.606 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds