Wall clock time and date at job start Mon Mar 30 2020 01:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 119.99702 * 2 1 4 4 H 1.08001 * 120.00091 * 202.34598 * 3 2 1 5 5 C 1.38811 * 119.99874 * 22.35682 * 3 2 1 6 6 N 1.31619 * 120.00538 * 11.32851 * 5 3 2 7 7 Si 1.86808 * 119.99558 * 191.33349 * 5 3 2 8 8 H 1.48502 * 109.47210 * 59.99826 * 7 5 3 9 9 H 1.48501 * 109.46968 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47118 * 299.99243 * 7 5 3 11 11 C 1.46493 * 119.99739 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.46940 * 269.99365 * 11 2 1 13 13 N 1.30351 * 125.47921 * 89.69555 * 12 11 2 14 14 C 1.34157 * 108.90270 * 179.89508 * 13 12 11 15 15 C 1.35777 * 107.51498 * 0.36641 * 14 13 12 16 16 C 1.47821 * 126.58380 * 179.77604 * 15 14 13 17 17 C 1.39553 * 120.15657 * 309.70536 * 16 15 14 18 18 C 1.37954 * 119.87628 * 179.69677 * 17 16 15 19 19 C 1.38376 * 120.19355 * 0.59912 * 18 17 16 20 20 C 1.38300 * 120.31612 * 359.67544 * 19 18 17 21 21 C 1.38208 * 120.12173 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.10395 * 179.97438 * 21 20 19 23 23 O 1.34017 * 125.48605 * 270.00345 * 12 11 2 24 24 H 1.08997 * 109.47246 * 274.20929 * 1 2 3 25 25 H 1.09002 * 109.47215 * 34.21240 * 1 2 3 26 26 H 1.09007 * 109.47305 * 154.21384 * 1 2 3 27 27 H 0.96994 * 120.00342 * 180.02562 * 6 5 3 28 28 H 1.08994 * 109.48050 * 29.99955 * 11 2 1 29 29 H 1.09001 * 109.47245 * 150.00181 * 11 2 1 30 30 H 1.07997 * 126.24412 * 180.17043 * 14 13 12 31 31 H 1.08001 * 120.06108 * 359.97438 * 17 16 15 32 32 H 1.08006 * 119.90223 * 180.29615 * 18 17 16 33 33 H 1.08005 * 119.84599 * 179.69694 * 19 18 17 34 34 H 1.08004 * 119.93997 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3428 0.4573 6 7 0.3840 2.2690 1.0937 7 14 2.3367 4.0047 0.1692 8 1 2.4917 4.2334 -1.2899 9 1 1.4845 5.0735 0.7495 10 1 3.6720 4.0285 0.8186 11 6 2.1974 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 7 1.6529 -2.4490 2.1351 14 6 2.2008 -2.6329 3.3458 15 6 3.3804 -1.9609 3.3668 16 6 4.3265 -1.8771 4.4994 17 6 3.8700 -1.5218 5.7694 18 6 4.7570 -1.4514 6.8237 19 6 6.0995 -1.7199 6.6228 20 6 6.5615 -2.0672 5.3664 21 6 5.6834 -2.1477 4.3022 22 9 6.1353 -2.4865 3.0749 23 8 3.5234 -1.3835 2.1536 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8498 -0.5778 26 1 -0.3634 -0.9254 -0.4471 27 1 -0.0465 3.0774 1.4129 28 1 1.6085 -2.0282 -0.5147 29 1 3.1499 -1.1382 -0.5143 30 1 1.7789 -3.2076 4.1570 31 1 2.8235 -1.3067 5.9275 32 1 4.4033 -1.1811 7.8078 33 1 6.7897 -1.6584 7.4512 34 1 7.6106 -2.2760 5.2166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159983274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:48 Heat of formation + Delta-G solvation = 8.369578 kcal Electronic energy + Delta-G solvation = -20712.861367 eV Core-core repulsion = 17334.031220 eV Total energy + Delta-G solvation = -3378.830147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.02621 -44.11248 -39.85619 -37.68411 -35.65525 -34.03561 -33.19179 -31.61546 -30.39755 -28.13437 -27.62991 -24.67030 -24.03285 -23.32399 -22.65843 -21.82164 -19.03694 -18.88270 -18.09089 -17.78195 -17.14015 -17.06871 -16.78271 -16.62753 -15.62002 -15.52913 -15.34684 -15.05277 -14.87213 -14.31943 -14.20631 -13.78429 -13.38638 -13.17564 -12.89043 -12.85942 -12.66996 -12.42097 -12.27078 -12.22616 -12.15040 -11.98538 -11.57464 -10.76587 -10.51944 -9.90315 -9.31319 -9.05664 -7.95677 -5.48160 -0.29177 0.14046 0.64117 1.42367 1.44732 1.51726 1.73261 1.80360 2.43909 2.57904 3.11730 3.13695 3.34131 3.55980 3.62363 3.72828 4.00939 4.06717 4.26025 4.27634 4.50602 4.59830 4.67838 4.80275 4.85559 4.95920 5.01036 5.15513 5.24320 5.27118 5.34892 5.37507 5.54271 5.64361 5.81636 6.17338 6.81824 7.00125 7.64670 8.08821 9.06982 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.005343 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.016531 B = 5238.990932 C = 5816.324346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.592 5.592 3 C -0.279 4.279 4 H 0.078 0.922 5 C -0.045 4.045 6 N -0.933 5.933 7 Si 0.975 3.025 8 H -0.268 1.268 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.226 3.774 12 C 0.190 3.810 13 N -0.515 5.515 14 C -0.022 4.022 15 C -0.052 4.052 16 C -0.071 4.071 17 C -0.074 4.074 18 C -0.117 4.117 19 C -0.069 4.069 20 C -0.151 4.151 21 C 0.086 3.914 22 F -0.151 7.151 23 O -0.212 6.212 24 H -0.003 1.003 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.252 0.748 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.210 0.790 31 H 0.141 0.859 32 H 0.173 0.827 33 H 0.180 0.820 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 -9.246 11.825 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.313 5.313 3 C -0.409 4.409 4 H 0.095 0.905 5 C -0.241 4.241 6 N -0.578 5.578 7 Si 0.801 3.199 8 H -0.193 1.193 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.096 3.904 12 C -0.019 4.019 13 N -0.244 5.244 14 C -0.162 4.162 15 C -0.106 4.106 16 C -0.073 4.073 17 C -0.092 4.092 18 C -0.135 4.135 19 C -0.087 4.087 20 C -0.170 4.170 21 C 0.067 3.933 22 F -0.130 7.130 23 O -0.098 6.098 24 H 0.015 0.985 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.227 0.773 31 H 0.159 0.841 32 H 0.190 0.810 33 H 0.197 0.803 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.932 -9.303 11.540 17.843 hybrid contribution 0.573 1.162 -0.141 1.303 sum 10.505 -8.141 11.400 17.510 Atomic orbital electron populations 1.20637 0.81483 0.96947 0.97590 1.44456 1.02813 1.00882 1.83149 1.19618 0.98814 0.85940 1.36502 0.90452 1.25949 0.98171 1.02404 0.97611 1.70263 1.18975 1.28087 1.40447 0.85244 0.77439 0.78699 0.78484 1.19315 1.21610 1.20534 1.20083 0.98807 0.88791 0.82698 1.29347 0.80443 0.92486 0.99596 1.70313 1.30389 1.18964 1.04779 1.23726 0.92748 1.03000 0.96695 1.21742 0.99973 1.02636 0.86201 1.17955 0.90057 1.07642 0.91604 1.21369 1.01879 0.96139 0.89861 1.21598 0.93040 0.99094 0.99737 1.21674 0.96352 0.94205 0.96461 1.21458 1.00671 1.02966 0.91862 1.18287 0.92115 1.01857 0.81073 1.91469 1.89421 1.89840 1.42260 1.84559 1.43412 1.59019 1.22841 0.98485 0.94983 0.94287 0.93877 0.86705 0.89283 0.77345 0.84117 0.80972 0.80255 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.13 9.01 127.77 1.15 10.28 16 2 N -0.59 -30.80 2.91 -731.32 -2.13 -32.92 16 3 C -0.28 -15.66 9.67 84.03 0.81 -14.85 16 4 H 0.08 4.19 7.84 -2.91 -0.02 4.17 16 5 C -0.05 -2.58 5.13 84.86 0.44 -2.14 16 6 N -0.93 -56.27 10.58 21.65 0.23 -56.04 16 7 Si 0.97 45.57 29.57 68.60 2.03 47.60 16 8 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 9 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 C 0.23 9.80 6.33 85.64 0.54 10.34 16 12 C 0.19 8.81 7.91 88.33 0.70 9.51 16 13 N -0.51 -22.98 11.27 -302.83 -3.41 -26.39 16 14 C -0.02 -0.85 11.78 83.77 0.99 0.14 16 15 C -0.05 -2.11 6.43 24.24 0.16 -1.95 16 16 C -0.07 -2.28 5.81 -20.06 -0.12 -2.40 16 17 C -0.07 -1.78 9.72 22.52 0.22 -1.57 16 18 C -0.12 -1.83 10.03 22.24 0.22 -1.61 16 19 C -0.07 -0.95 10.04 22.32 0.22 -0.73 16 20 C -0.15 -2.97 10.01 22.28 0.22 -2.75 16 21 C 0.09 2.55 7.28 22.63 0.16 2.72 16 22 F -0.15 -5.26 16.82 44.97 0.76 -4.50 16 23 O -0.21 -10.04 10.79 -7.92 -0.09 -10.12 16 24 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 25 H 0.03 1.72 7.19 -2.39 -0.02 1.70 16 26 H 0.04 1.70 7.84 -2.38 -0.02 1.68 16 27 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.12 4.26 7.86 -2.39 -0.02 4.24 16 29 H 0.09 3.56 8.03 -2.39 -0.02 3.54 16 30 H 0.21 6.17 8.06 -2.91 -0.02 6.15 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -74.81 307.20 4.23 -70.58 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.12 Total: 6.81 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 5.72 Total: 4.99 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -5.31 Total: -115.36 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.09 Total: -10.12 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.76 Total: -4.50 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.81 4.23 -70.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159983274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.948 kcal (2) G-P(sol) polarization free energy of solvation -74.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds