Wall clock time and date at job start Mon Mar 30 2020 01:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 112.99990 * 2 1 4 4 O 1.45205 * 109.46868 * 50.33389 * 3 2 1 5 5 C 1.34704 * 116.99595 * 180.02562 * 4 3 2 6 6 O 1.21469 * 120.00260 * 359.97438 * 5 4 3 7 7 C 1.47774 * 119.99819 * 179.97438 * 5 4 3 8 8 C 1.39967 * 120.02904 * 359.72988 * 7 5 4 9 9 C 1.38317 * 120.35052 * 179.76499 * 8 7 5 10 10 C 1.37760 * 120.41762 * 0.50441 * 9 8 7 11 11 C 1.40753 * 120.05239 * 359.74910 * 10 9 8 12 12 C 1.41431 * 120.17542 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00249 * 334.91952 * 12 11 10 14 14 C 1.39939 * 120.00215 * 154.92070 * 12 11 10 15 15 N 1.30835 * 119.99783 * 342.59646 * 14 12 11 16 16 Si 1.86799 * 120.00387 * 162.59886 * 14 12 11 17 17 H 1.48495 * 109.47012 * 59.99967 * 16 14 12 18 18 H 1.48505 * 109.47080 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46851 * 299.99816 * 16 14 12 20 20 C 1.39046 * 120.02881 * 179.97438 * 7 5 4 21 21 C 1.54038 * 113.81879 * 131.82587 * 2 1 3 22 22 O 1.44443 * 85.42587 * 91.80777 * 21 2 1 23 23 C 1.44180 * 93.37640 * 24.09096 * 22 21 2 24 24 H 1.09000 * 109.47329 * 69.66321 * 1 2 3 25 25 H 1.08996 * 109.47128 * 189.66912 * 1 2 3 26 26 H 1.09006 * 109.47315 * 309.66986 * 1 2 3 27 27 H 1.08998 * 109.46878 * 170.33201 * 3 2 1 28 28 H 1.08994 * 109.46947 * 290.33282 * 3 2 1 29 29 H 1.07997 * 119.82176 * 359.97438 * 8 7 5 30 30 H 1.08007 * 119.78757 * 180.25368 * 9 8 7 31 31 H 1.07997 * 119.97349 * 179.76525 * 10 9 8 32 32 H 0.96997 * 119.99941 * 180.02562 * 15 14 12 33 33 H 1.07998 * 120.20814 * 359.96072 * 20 7 5 34 34 H 1.08997 * 113.86912 * 205.91763 * 21 2 1 35 35 H 1.09000 * 113.86192 * 337.61944 * 21 2 1 36 36 H 1.09003 * 113.86155 * 221.76597 * 23 22 21 37 37 H 1.08997 * 113.98199 * 90.08102 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 8 1.5125 2.1954 1.0538 5 6 1.9302 3.4688 1.1893 6 8 2.7854 3.9097 0.4478 7 6 1.3481 4.3295 2.2401 8 6 0.3587 3.8238 3.0912 9 6 -0.1873 4.6221 4.0801 10 6 0.2286 5.9265 4.2323 11 6 1.2188 6.4544 3.3826 12 6 1.6481 7.7931 3.5369 13 1 0.9914 8.5222 3.9879 14 6 2.9238 8.1730 3.1051 15 7 3.8362 7.2627 2.8799 16 14 3.3242 9.9797 2.8503 17 1 3.1460 10.7114 4.1301 18 1 4.7312 10.1155 2.3948 19 1 2.4140 10.5484 1.8241 20 6 1.7792 5.6439 2.3809 21 6 2.1520 -0.9397 1.0501 22 8 2.1471 -1.9296 -0.0018 23 6 2.1520 -0.9397 -1.0500 24 1 -0.3634 0.3571 -0.9636 25 1 -0.3633 -1.0130 0.1726 26 1 -0.3634 0.6561 0.7911 27 1 3.2023 1.3470 0.1726 28 1 1.9411 1.8824 -0.9636 29 1 0.0222 2.8040 2.9774 30 1 -0.9473 4.2213 4.7345 31 1 -0.2052 6.5446 5.0044 32 1 4.7206 7.5261 2.5809 33 1 2.5401 6.0395 1.7244 34 1 3.1503 -0.6427 1.3715 35 1 1.4869 -1.1742 1.8812 36 1 1.4868 -1.1741 -1.8811 37 1 3.1494 -0.6415 -1.3731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170730459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:44 Heat of formation + Delta-G solvation = -87.980495 kcal Electronic energy + Delta-G solvation = -20797.345393 eV Core-core repulsion = 17505.504748 eV Total energy + Delta-G solvation = -3291.840646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89880 -39.61300 -37.40926 -35.83770 -33.79532 -32.63910 -30.36755 -29.54942 -27.33983 -26.76961 -25.67325 -25.21061 -22.86712 -21.03150 -19.84332 -19.07191 -17.88970 -16.79422 -16.41818 -16.29194 -15.87028 -15.56175 -15.44927 -14.87710 -14.53753 -13.73389 -13.51634 -13.26188 -13.13946 -12.69417 -12.57965 -12.37249 -12.15264 -11.73185 -11.65801 -11.22408 -11.14679 -10.90664 -10.80470 -10.69887 -10.56990 -10.24013 -10.20353 -9.85226 -9.76995 -9.50264 -9.27517 -7.78902 -7.59834 -6.86484 -4.48100 1.93419 2.75016 3.03849 3.05241 3.06958 3.11470 3.49291 3.55486 3.87169 4.03686 4.53562 4.58061 4.78767 4.91166 5.11862 5.28208 5.38458 5.42969 5.50066 5.59616 5.66370 5.75892 5.80185 5.90884 5.95098 6.08100 6.18867 6.35525 6.59022 6.87917 6.90384 6.94376 7.12966 7.26595 7.63521 7.70712 7.86436 8.06062 8.39794 8.50415 8.72754 8.74748 10.08942 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.029733 B = 0.003960 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.503450 B = 7069.337481 C = 7720.069617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C 0.073 3.927 4 O -0.351 6.351 5 C 0.511 3.489 6 O -0.519 6.519 7 C -0.115 4.115 8 C -0.194 4.194 9 C -0.103 4.103 10 C -0.201 4.201 11 C 0.096 3.904 12 C -0.461 4.461 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.788 5.788 16 Si 0.912 3.088 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.089 4.089 21 C 0.046 3.954 22 O -0.380 6.380 23 C 0.047 3.953 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.285 0.715 33 H 0.135 0.865 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -10.310 -4.772 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 C -0.002 4.002 4 O -0.268 6.268 5 C 0.358 3.642 6 O -0.408 6.408 7 C -0.116 4.116 8 C -0.214 4.214 9 C -0.122 4.122 10 C -0.221 4.221 11 C 0.094 3.906 12 C -0.490 4.490 13 H 0.101 0.899 14 C -0.145 4.145 15 N -0.412 5.412 16 Si 0.736 3.264 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.109 4.109 21 C -0.031 4.031 22 O -0.299 6.299 23 C -0.029 4.029 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.523 -10.522 -5.077 11.952 hybrid contribution 0.505 0.966 -0.215 1.111 sum -2.018 -9.556 -5.292 11.108 Atomic orbital electron populations 1.21527 0.91067 1.02640 1.03201 1.23795 0.98809 0.93348 0.96794 1.22946 0.97075 0.89529 0.90613 1.86589 1.62882 1.24925 1.52441 1.21907 0.79420 0.79666 0.83159 1.90764 1.31268 1.74220 1.44570 1.18828 1.01555 0.94079 0.97178 1.20547 1.01425 0.99218 1.00169 1.20513 0.99396 0.94523 0.97733 1.21191 1.04356 0.95083 1.01501 1.17532 0.90592 0.93178 0.89309 1.19547 0.99146 0.94784 1.35520 0.89949 1.25965 0.95848 1.00122 0.92606 1.69769 1.03958 1.35774 1.31708 0.86299 0.78130 0.82071 0.79893 1.18904 1.20212 1.18689 1.21655 1.00229 0.90883 0.98091 1.24170 1.00776 0.85874 0.92264 1.89704 1.95780 1.27477 1.16931 1.24026 1.00583 0.86070 0.92268 0.91980 0.91808 0.90418 0.91168 0.91127 0.87903 0.88528 0.88331 0.90342 0.84740 0.89806 0.88522 0.88699 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.03 37.16 0.34 -1.03 16 2 C -0.13 -1.45 1.23 -153.43 -0.19 -1.64 16 3 C 0.07 1.03 4.94 37.16 0.18 1.22 16 4 O -0.35 -6.26 8.53 -40.50 -0.35 -6.60 16 5 C 0.51 11.19 7.90 34.63 0.27 11.46 16 6 O -0.52 -12.43 16.12 -19.24 -0.31 -12.74 16 7 C -0.12 -2.72 5.87 -105.05 -0.62 -3.33 16 8 C -0.19 -4.16 9.62 -38.90 -0.37 -4.53 16 9 C -0.10 -2.18 10.01 -39.73 -0.40 -2.58 16 10 C -0.20 -4.68 9.78 -38.81 -0.38 -5.06 16 11 C 0.10 2.49 5.57 -106.87 -0.59 1.90 16 12 C -0.46 -11.84 9.05 -37.73 -0.34 -12.18 16 13 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 14 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 15 N -0.79 -20.42 10.97 55.55 0.61 -19.81 16 16 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 17 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 20 C -0.09 -2.33 8.23 -38.43 -0.32 -2.64 16 21 C 0.05 0.52 8.34 37.64 0.31 0.83 16 22 O -0.38 -4.65 12.39 -35.23 -0.44 -5.09 16 23 C 0.05 0.47 8.37 37.64 0.31 0.78 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 26 H 0.08 0.94 7.41 -51.93 -0.38 0.55 16 27 H 0.07 0.99 7.98 -51.93 -0.41 0.57 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 1.95 7.59 -52.49 -0.40 1.56 16 30 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 32 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 33 H 0.13 3.76 5.76 -52.49 -0.30 3.46 16 34 H 0.08 0.91 7.99 -51.93 -0.41 0.49 16 35 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -28.61 319.66 -7.41 -36.02 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.83 Total: 5.14 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.88 Total: -15.08 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.61 Total: -19.81 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.09 Total: -24.43 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.61 -7.41 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170730459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.958 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds