Wall clock time and date at job start Mon Mar 30 2020 01:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 112.99990 * 2 1 4 4 O 1.45205 * 109.46868 * 50.33389 * 3 2 1 5 5 C 1.34704 * 116.99595 * 180.02562 * 4 3 2 6 6 O 1.21469 * 120.00260 * 359.97438 * 5 4 3 7 7 C 1.47774 * 119.99819 * 179.97438 * 5 4 3 8 8 C 1.39967 * 120.02904 * 359.72988 * 7 5 4 9 9 C 1.38317 * 120.35052 * 179.76499 * 8 7 5 10 10 C 1.37760 * 120.41762 * 0.50441 * 9 8 7 11 11 C 1.40753 * 120.05239 * 359.74910 * 10 9 8 12 12 C 1.41431 * 120.17542 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00249 * 334.91952 * 12 11 10 14 14 C 1.39939 * 120.00215 * 154.92070 * 12 11 10 15 15 N 1.30835 * 119.99783 * 342.59646 * 14 12 11 16 16 Si 1.86799 * 120.00387 * 162.59886 * 14 12 11 17 17 H 1.48495 * 109.47012 * 59.99967 * 16 14 12 18 18 H 1.48505 * 109.47080 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46851 * 299.99816 * 16 14 12 20 20 C 1.39046 * 120.02881 * 179.97438 * 7 5 4 21 21 C 1.54038 * 113.81879 * 131.82587 * 2 1 3 22 22 O 1.44443 * 85.42587 * 91.80777 * 21 2 1 23 23 C 1.44180 * 93.37640 * 24.09096 * 22 21 2 24 24 H 1.09000 * 109.47329 * 69.66321 * 1 2 3 25 25 H 1.08996 * 109.47128 * 189.66912 * 1 2 3 26 26 H 1.09006 * 109.47315 * 309.66986 * 1 2 3 27 27 H 1.08998 * 109.46878 * 170.33201 * 3 2 1 28 28 H 1.08994 * 109.46947 * 290.33282 * 3 2 1 29 29 H 1.07997 * 119.82176 * 359.97438 * 8 7 5 30 30 H 1.08007 * 119.78757 * 180.25368 * 9 8 7 31 31 H 1.07997 * 119.97349 * 179.76525 * 10 9 8 32 32 H 0.96997 * 119.99941 * 180.02562 * 15 14 12 33 33 H 1.07998 * 120.20814 * 359.96072 * 20 7 5 34 34 H 1.08997 * 113.86912 * 205.91763 * 21 2 1 35 35 H 1.09000 * 113.86192 * 337.61944 * 21 2 1 36 36 H 1.09003 * 113.86155 * 221.76597 * 23 22 21 37 37 H 1.08997 * 113.98199 * 90.08102 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 8 1.5125 2.1954 1.0538 5 6 1.9302 3.4688 1.1893 6 8 2.7854 3.9097 0.4478 7 6 1.3481 4.3295 2.2401 8 6 0.3587 3.8238 3.0912 9 6 -0.1873 4.6221 4.0801 10 6 0.2286 5.9265 4.2323 11 6 1.2188 6.4544 3.3826 12 6 1.6481 7.7931 3.5369 13 1 0.9914 8.5222 3.9879 14 6 2.9238 8.1730 3.1051 15 7 3.8362 7.2627 2.8799 16 14 3.3242 9.9797 2.8503 17 1 3.1460 10.7114 4.1301 18 1 4.7312 10.1155 2.3948 19 1 2.4140 10.5484 1.8241 20 6 1.7792 5.6439 2.3809 21 6 2.1520 -0.9397 1.0501 22 8 2.1471 -1.9296 -0.0018 23 6 2.1520 -0.9397 -1.0500 24 1 -0.3634 0.3571 -0.9636 25 1 -0.3633 -1.0130 0.1726 26 1 -0.3634 0.6561 0.7911 27 1 3.2023 1.3470 0.1726 28 1 1.9411 1.8824 -0.9636 29 1 0.0222 2.8040 2.9774 30 1 -0.9473 4.2213 4.7345 31 1 -0.2052 6.5446 5.0044 32 1 4.7206 7.5261 2.5809 33 1 2.5401 6.0395 1.7244 34 1 3.1503 -0.6427 1.3715 35 1 1.4869 -1.1742 1.8812 36 1 1.4868 -1.1741 -1.8811 37 1 3.1494 -0.6415 -1.3731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170730459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:44 Heat of formation + Delta-G solvation = -103.364643 kcal Electronic energy + Delta-G solvation = -20798.012500 eV Core-core repulsion = 17505.504748 eV Total energy + Delta-G solvation = -3292.507752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.92991 -41.13286 -39.16980 -37.44072 -35.62130 -33.68386 -32.15390 -31.36319 -28.38690 -27.59988 -27.29821 -26.52410 -24.49289 -22.85159 -21.52937 -20.01697 -19.61938 -18.24419 -17.93145 -17.56688 -17.05270 -16.82309 -16.67145 -16.54045 -16.14743 -15.22497 -14.95457 -14.73177 -14.41528 -14.34045 -14.00882 -13.51930 -13.36927 -13.01872 -12.97758 -12.83987 -12.73645 -12.55906 -12.23020 -12.07860 -11.87871 -11.79456 -11.55613 -11.39665 -11.22183 -11.08747 -10.69361 -9.61858 -9.44387 -8.68969 -6.40638 0.12867 0.97049 1.37588 1.46881 1.50916 1.62454 1.80066 2.18925 2.63508 2.72174 3.09589 3.57256 3.62558 3.80866 3.94138 4.13266 4.31006 4.32370 4.35625 4.43804 4.58926 4.62944 4.81937 4.83920 4.89218 4.89973 5.04782 5.05869 5.10497 5.12926 5.25235 5.27368 5.34416 5.44867 5.81454 5.89163 6.00715 6.23006 6.52485 6.80628 6.86335 6.88664 8.28481 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.029733 B = 0.003960 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.503450 B = 7069.337481 C = 7720.069617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.125 4.125 3 C 0.067 3.933 4 O -0.340 6.340 5 C 0.515 3.485 6 O -0.548 6.548 7 C -0.129 4.129 8 C -0.178 4.178 9 C -0.099 4.099 10 C -0.204 4.204 11 C 0.067 3.933 12 C -0.497 4.497 13 H 0.087 0.913 14 C 0.031 3.969 15 N -0.828 5.828 16 Si 0.983 3.017 17 H -0.253 1.253 18 H -0.273 1.273 19 H -0.260 1.260 20 C -0.124 4.124 21 C 0.042 3.958 22 O -0.396 6.396 23 C 0.053 3.947 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.115 0.885 32 H 0.288 0.712 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.340 -11.461 -4.644 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.125 4.125 3 C -0.007 4.007 4 O -0.257 6.257 5 C 0.363 3.637 6 O -0.440 6.440 7 C -0.130 4.130 8 C -0.198 4.198 9 C -0.117 4.117 10 C -0.223 4.223 11 C 0.064 3.936 12 C -0.526 4.526 13 H 0.105 0.895 14 C -0.184 4.184 15 N -0.453 5.453 16 Si 0.804 3.196 17 H -0.177 1.177 18 H -0.197 1.197 19 H -0.184 1.184 20 C -0.144 4.144 21 C -0.034 4.034 22 O -0.316 6.316 23 C -0.024 4.024 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.152 0.848 30 H 0.159 0.841 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.842 -11.704 -4.939 13.272 hybrid contribution 0.811 1.112 -0.256 1.400 sum -3.031 -10.592 -5.195 12.180 Atomic orbital electron populations 1.21526 0.90388 1.03061 1.03288 1.23871 0.99327 0.91274 0.98037 1.23307 0.97292 0.90472 0.89590 1.86553 1.62535 1.23071 1.53532 1.21683 0.78805 0.80744 0.82423 1.90744 1.32550 1.75163 1.45572 1.19086 1.02076 0.93689 0.98155 1.20959 0.99581 1.00503 0.98729 1.20971 0.99538 0.93459 0.97728 1.21511 1.03318 0.96391 1.01123 1.17885 0.91845 0.93782 0.90050 1.19852 1.00065 0.95344 1.37324 0.89455 1.26843 0.95302 1.04534 0.91680 1.69864 1.04416 1.37952 1.33096 0.85228 0.77894 0.76396 0.80119 1.17660 1.19714 1.18435 1.21465 1.01354 0.92552 0.98996 1.24267 1.01095 0.85614 0.92456 1.89695 1.95884 1.28261 1.17714 1.24210 1.01580 0.84505 0.92082 0.91002 0.90686 0.91772 0.91232 0.90789 0.84776 0.84115 0.86742 0.90171 0.87765 0.89699 0.87766 0.86586 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.03 71.98 0.65 -1.74 16 2 C -0.12 -2.58 1.23 -51.48 -0.06 -2.64 16 3 C 0.07 1.82 4.94 71.98 0.36 2.18 16 4 O -0.34 -11.75 8.53 -56.13 -0.48 -12.23 16 5 C 0.52 22.70 7.90 70.34 0.56 23.26 16 6 O -0.55 -27.05 16.12 19.94 0.32 -26.73 16 7 C -0.13 -6.11 5.87 -20.14 -0.12 -6.23 16 8 C -0.18 -7.26 9.62 22.71 0.22 -7.04 16 9 C -0.10 -3.90 10.01 22.18 0.22 -3.68 16 10 C -0.20 -9.27 9.78 22.77 0.22 -9.05 16 11 C 0.07 3.53 5.57 -21.32 -0.12 3.41 16 12 C -0.50 -26.27 9.05 23.47 0.21 -26.06 16 13 H 0.09 4.32 7.90 -2.91 -0.02 4.30 16 14 C 0.03 1.59 5.14 85.25 0.44 2.03 16 15 N -0.83 -44.93 10.97 21.83 0.24 -44.69 16 16 Si 0.98 38.44 29.59 68.60 2.03 40.47 16 17 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 18 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 20 C -0.12 -6.72 8.23 23.02 0.19 -6.53 16 21 C 0.04 0.87 8.34 72.30 0.60 1.47 16 22 O -0.40 -8.80 12.39 -148.98 -1.85 -10.64 16 23 C 0.05 0.90 8.37 72.29 0.60 1.51 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16 26 H 0.06 1.40 7.41 -2.38 -0.02 1.38 16 27 H 0.07 1.91 7.98 -2.39 -0.02 1.89 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.13 4.59 7.59 -2.91 -0.02 4.57 16 30 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 31 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 33 H 0.10 6.22 5.76 -2.91 -0.02 6.21 16 34 H 0.08 1.72 7.99 -2.39 -0.02 1.70 16 35 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.12 1.51 8.10 -2.39 -0.02 1.49 16 37 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 Total: -1.00 -63.77 319.66 5.31 -58.47 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 1.07 Total: 24.47 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 3.97 Total: -29.11 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.24 Total: -44.69 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -2.00 Total: -49.60 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -63.77 5.31 -58.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170730459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.898 kcal (2) G-P(sol) polarization free energy of solvation -63.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds