Wall clock time and date at job start Mon Mar 30 2020 01:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00305 * 2 1 4 4 H 1.48503 * 109.47410 * 270.00351 * 3 2 1 5 5 H 1.48511 * 109.47189 * 29.99999 * 3 2 1 6 6 H 1.48496 * 109.47380 * 149.99996 * 3 2 1 7 7 C 1.37877 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00536 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47009 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47159 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47131 * 179.97438 * 11 10 9 13 13 N 1.28729 * 125.34264 * 89.97822 * 12 11 10 14 14 N 1.28978 * 108.94439 * 180.02562 * 13 12 11 15 15 C 1.34048 * 107.27025 * 0.02562 * 14 13 12 16 16 C 1.48467 * 126.67699 * 179.97438 * 15 14 13 17 17 C 1.39335 * 120.10255 * 0.02562 * 16 15 14 18 18 C 1.38012 * 119.93295 * 179.72591 * 17 16 15 19 19 C 1.38297 * 120.14500 * 359.97438 * 18 17 16 20 20 C 1.38517 * 120.21137 * 359.97438 * 19 18 17 21 21 F 1.35095 * 119.96699 * 180.02562 * 20 19 18 22 22 C 1.38277 * 120.06722 * 0.04152 * 20 19 18 23 23 N 1.28876 * 125.34012 * 270.27218 * 12 11 10 24 24 H 0.97003 * 119.99768 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47507 * 59.99914 * 9 7 2 26 26 H 1.09004 * 109.47155 * 299.99970 * 9 7 2 27 27 H 1.08996 * 109.47329 * 60.00009 * 10 9 7 28 28 H 1.09000 * 109.47047 * 299.99387 * 10 9 7 29 29 H 1.09009 * 109.46530 * 60.00038 * 11 10 9 30 30 H 1.08990 * 109.46863 * 300.00314 * 11 10 9 31 31 H 1.08005 * 120.03049 * 359.69790 * 17 16 15 32 32 H 1.08002 * 119.93047 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.89523 * 179.97438 * 19 18 17 34 34 H 1.07996 * 120.07803 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4801 -4.9872 -0.0020 12 7 2.4321 -6.1007 -0.0024 13 7 2.9162 -6.6668 1.0475 14 7 3.7206 -7.6069 0.6830 15 6 3.7342 -7.6216 -0.6573 16 6 4.5175 -8.5358 -1.5262 17 6 5.3442 -9.5027 -0.9577 18 6 6.0664 -10.3544 -1.7687 19 6 5.9711 -10.2506 -3.1445 20 6 5.1503 -9.2923 -3.7160 21 9 5.0605 -9.1956 -5.0605 22 6 4.4230 -8.4342 -2.9117 23 7 2.9203 -6.6637 -1.0538 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8880 27 1 2.8711 -3.6048 0.8890 28 1 2.8724 -3.6040 -0.8910 29 1 0.8538 -5.0447 -0.8924 30 1 0.8531 -5.0450 0.8876 31 1 5.4200 -9.5853 0.1165 32 1 6.7068 -11.1041 -1.3281 33 1 6.5384 -10.9189 -3.7753 34 1 3.7834 -7.6867 -3.3571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171191966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:38 Heat of formation + Delta-G solvation = 90.780591 kcal Electronic energy + Delta-G solvation = -19498.429090 eV Core-core repulsion = 16155.465304 eV Total energy + Delta-G solvation = -3342.963786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.13060 -44.19727 -39.23168 -36.01125 -33.72496 -33.53209 -32.00705 -30.97639 -30.46615 -27.68993 -24.81462 -24.54237 -23.17886 -21.91573 -21.86503 -20.68118 -18.31012 -17.18747 -16.96000 -16.48100 -16.40850 -16.06754 -15.82394 -15.17261 -14.60371 -14.51049 -14.05400 -13.78758 -13.36843 -13.15621 -12.64397 -12.47181 -12.29476 -12.02320 -11.68319 -11.57240 -11.27303 -10.98102 -10.93428 -10.89885 -10.76017 -10.51799 -10.06489 -9.68404 -9.32422 -9.18524 -8.84570 -8.49448 -6.14536 -4.17953 0.46088 0.87816 1.39568 2.07622 2.29837 3.25165 3.31899 3.35312 3.40317 3.52083 3.96096 4.24099 4.35423 4.60897 4.63739 4.84508 4.95470 5.06849 5.19110 5.22332 5.28256 5.45605 5.54859 5.70853 5.74099 5.82384 5.98577 6.05673 6.11951 6.22348 6.48980 6.51113 6.68983 7.42056 7.51141 7.82117 8.21638 8.41536 8.87236 9.47401 10.96680 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.025450 B = 0.003048 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.932690 B = 9184.637699 C = 9739.921018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.124 4.124 11 C 0.119 3.881 12 N -0.116 5.116 13 N -0.057 5.057 14 N -0.282 5.282 15 C 0.187 3.813 16 C 0.028 3.972 17 C -0.092 4.092 18 C -0.092 4.092 19 C -0.142 4.142 20 C 0.098 3.902 21 F -0.136 7.136 22 C -0.120 4.120 23 N -0.292 5.292 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.625 -20.342 -4.330 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.163 4.163 11 C 0.001 3.999 12 N -0.029 5.029 13 N -0.050 5.050 14 N -0.152 5.152 15 C -0.092 4.092 16 C 0.025 3.975 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.162 4.162 20 C 0.078 3.922 21 F -0.115 7.115 22 C -0.141 4.141 23 N -0.143 5.143 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.154 -19.880 -3.765 21.814 hybrid contribution 0.472 0.931 -0.704 1.259 sum 8.626 -18.948 -4.469 21.294 Atomic orbital electron populations 1.69943 1.06063 1.26968 1.50228 1.24997 0.94893 0.99395 0.94950 0.86541 0.79848 0.83116 0.78231 1.20536 1.21074 1.19800 1.21115 0.93100 0.90602 1.51521 0.92530 1.19056 0.93551 0.90433 0.98003 1.22159 1.00288 0.91444 1.02439 1.22979 0.88897 0.81436 1.06569 1.50581 1.28608 1.23688 0.99994 1.78925 1.07320 1.04097 1.14618 1.75959 1.15186 1.13943 1.10145 1.23396 0.99168 0.96715 0.89967 1.16983 0.96244 0.94164 0.90095 1.21291 0.94861 0.93621 1.01436 1.20948 0.98875 0.98962 0.92240 1.21299 0.99777 0.98869 0.96239 1.17462 0.99492 0.98002 0.77205 1.91524 1.95098 1.95600 1.29268 1.21175 1.00452 0.99993 0.92469 1.74883 1.13500 1.10092 1.15835 0.92755 0.95839 0.95782 0.91744 0.91804 0.86685 0.86418 0.83919 0.84185 0.84363 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.15 9.11 -34.44 -0.31 -14.47 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.32 5.48 -26.73 -0.15 -2.47 16 11 C 0.12 1.80 6.60 -4.04 -0.03 1.77 16 12 N -0.12 -1.88 3.99 -10.63 -0.04 -1.92 16 13 N -0.06 -0.97 13.23 60.35 0.80 -0.17 16 14 N -0.28 -4.56 12.23 32.16 0.39 -4.16 16 15 C 0.19 2.83 7.94 -156.30 -1.24 1.59 16 16 C 0.03 0.35 5.88 -104.90 -0.62 -0.27 16 17 C -0.09 -0.89 9.70 -39.26 -0.38 -1.27 16 18 C -0.09 -0.68 10.03 -39.64 -0.40 -1.08 16 19 C -0.14 -1.13 10.02 -39.46 -0.40 -1.53 16 20 C 0.10 1.00 7.29 -39.46 -0.29 0.71 16 21 F -0.14 -1.50 17.26 2.25 0.04 -1.46 16 22 C -0.12 -1.38 9.68 -39.19 -0.38 -1.76 16 23 N -0.29 -4.71 11.85 32.17 0.38 -4.33 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.12 1.56 8.14 -51.92 -0.42 1.14 16 30 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.14 1.28 7.89 -52.48 -0.41 0.87 16 32 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.15 1.71 7.88 -52.49 -0.41 1.30 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -30.20 311.65 -6.19 -36.39 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -3.75 Total: -3.45 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -4.42 Total: -16.72 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 2.27 Total: -35.49 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.20 -6.19 -36.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171191966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.172 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds