Wall clock time and date at job start Mon Mar 30 2020 01:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47200 * 2 1 4 4 C 1.50706 * 109.47347 * 240.00298 * 2 1 3 5 5 O 1.21291 * 119.99591 * 263.16138 * 4 2 1 6 6 N 1.34768 * 120.00002 * 83.15680 * 4 2 1 7 7 C 1.37095 * 120.00195 * 5.36046 * 6 4 2 8 8 H 1.07998 * 120.00272 * 4.65180 * 7 6 4 9 9 C 1.38957 * 120.00270 * 184.65262 * 7 6 4 10 10 N 1.31417 * 119.99782 * 23.40924 * 9 7 6 11 11 Si 1.86799 * 120.00272 * 203.41108 * 9 7 6 12 12 H 1.48507 * 109.46777 * 89.99911 * 11 9 7 13 13 H 1.48492 * 109.47061 * 209.99769 * 11 9 7 14 14 H 1.48494 * 109.46843 * 330.00043 * 11 9 7 15 15 C 1.46504 * 119.99884 * 185.35219 * 6 4 2 16 16 C 1.47209 * 109.46767 * 92.50229 * 15 6 4 17 17 N 5.23682 * 76.96351 * 252.11016 * 2 1 3 18 18 C 1.50704 * 109.47450 * 120.00240 * 2 1 3 19 19 C 1.38258 * 119.98740 * 60.02226 * 18 2 1 20 20 C 1.38229 * 120.04918 * 180.02562 * 19 18 2 21 21 C 1.38220 * 120.02676 * 359.97438 * 20 19 18 22 22 C 1.38440 * 119.97221 * 359.70070 * 21 20 19 23 23 F 1.35095 * 120.02438 * 180.32029 * 22 21 20 24 24 C 1.38177 * 119.98545 * 240.00350 * 18 2 1 25 25 H 1.09008 * 109.46913 * 175.88506 * 1 2 3 26 26 H 1.09001 * 109.47338 * 295.88317 * 1 2 3 27 27 H 1.08997 * 109.47523 * 55.88864 * 1 2 3 28 28 H 0.96991 * 119.99971 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47264 * 212.49868 * 15 6 4 30 30 H 1.08997 * 109.47416 * 332.50645 * 15 6 4 31 31 H 1.08003 * 119.97477 * 0.02562 * 19 18 2 32 32 H 1.07998 * 119.98512 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.01384 * 180.02562 * 21 20 19 34 34 H 1.08009 * 120.01511 * 359.97438 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3524 -1.8786 -1.1681 6 7 2.1259 -0.0476 -2.4002 7 6 1.8696 1.2984 -2.4479 8 1 1.6665 1.8420 -1.5371 9 6 1.8712 1.9632 -3.6681 10 7 1.6566 1.2963 -4.7800 11 14 2.1784 3.8048 -3.7280 12 1 3.6346 4.0594 -3.8693 13 1 1.4589 4.3891 -4.8881 14 1 1.6859 4.4297 -2.4742 15 6 2.5016 -0.7654 -3.6209 16 6 1.2864 -1.2180 -4.3176 17 7 0.3487 -1.5672 -4.8552 18 6 2.0324 -0.7105 1.2304 19 6 1.6986 -2.0343 1.4487 20 6 2.1583 -2.6870 2.5771 21 6 2.9527 -2.0169 3.4884 22 6 3.2931 -0.6933 3.2674 23 9 4.0748 -0.0393 4.1541 24 6 2.8267 -0.0386 2.1398 25 1 -0.3633 -1.0251 -0.0737 26 1 -0.3634 0.4486 0.9246 27 1 -0.3634 0.5763 -0.8508 28 1 1.6573 1.7604 -5.6316 29 1 3.0683 -0.1010 -4.2733 30 1 3.1141 -1.6286 -3.3608 31 1 1.0783 -2.5588 0.7370 32 1 1.8967 -3.7210 2.7468 33 1 3.3121 -2.5273 4.3697 34 1 3.0879 0.9953 1.9688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173372796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:14 Heat of formation + Delta-G solvation = -31.423327 kcal Electronic energy + Delta-G solvation = -20951.975094 eV Core-core repulsion = 17571.419398 eV Total energy + Delta-G solvation = -3380.555697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.81052 -41.19788 -39.59517 -37.47716 -36.28229 -34.90627 -33.46383 -31.56122 -30.46526 -29.21896 -26.76114 -25.29978 -23.60100 -22.78351 -20.89934 -19.67100 -18.32942 -18.10031 -17.64891 -17.03012 -16.98416 -16.51238 -16.29059 -16.00123 -15.53195 -15.19786 -14.87781 -14.53049 -14.35663 -13.99392 -13.88747 -13.51099 -13.34093 -13.11815 -12.97952 -12.89899 -12.81568 -12.60037 -12.33622 -12.14985 -12.13830 -11.98260 -11.60417 -11.10147 -10.36196 -10.00836 -9.78975 -9.50323 -8.36351 -5.87355 0.29862 0.34853 1.44882 1.56092 1.64561 1.79642 2.05728 2.29639 2.38183 2.70470 3.03553 3.11106 3.36394 3.67453 3.75958 3.95101 4.17616 4.27735 4.34339 4.38918 4.43140 4.58528 4.68609 4.92635 4.96199 4.99066 5.04403 5.20135 5.21694 5.28729 5.47927 5.53857 5.65210 5.72944 6.04908 6.35786 7.01412 7.09914 7.48445 7.87429 8.66862 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.005720 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.803617 B = 4894.246726 C = 5809.793876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.054 4.054 3 H 0.109 0.891 4 C 0.464 3.536 5 O -0.613 6.613 6 N -0.449 5.449 7 C -0.351 4.351 8 H 0.124 0.876 9 C 0.003 3.997 10 N -0.895 5.895 11 Si 0.985 3.015 12 H -0.271 1.271 13 H -0.296 1.296 14 H -0.258 1.258 15 C 0.226 3.774 16 C 0.271 3.729 17 N -0.519 5.519 18 C -0.047 4.047 19 C -0.100 4.100 20 C -0.095 4.095 21 C -0.154 4.154 22 C 0.076 3.924 23 F -0.147 7.147 24 C -0.154 4.154 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.273 0.727 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -0.026 12.805 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 H 0.127 0.873 4 C 0.254 3.746 5 O -0.499 6.499 6 N -0.168 5.168 7 C -0.477 4.477 8 H 0.141 0.859 9 C -0.199 4.199 10 N -0.534 5.534 11 Si 0.810 3.190 12 H -0.197 1.197 13 H -0.223 1.223 14 H -0.181 1.181 15 C 0.100 3.900 16 C -0.047 4.047 17 N -0.201 5.201 18 C -0.047 4.047 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.172 4.172 22 C 0.057 3.943 23 F -0.126 7.126 24 C -0.172 4.172 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.810 -1.026 11.854 12.035 hybrid contribution 0.450 1.205 -0.482 1.373 sum 2.260 0.179 11.372 11.596 Atomic orbital electron populations 1.21590 0.91556 1.01960 1.03146 1.20076 0.97993 1.00256 0.89214 0.87287 1.20535 0.81855 0.86649 0.85568 1.90540 1.55364 1.17950 1.86095 1.43877 1.59392 1.08636 1.04907 1.20124 1.49931 0.81803 0.95842 0.85857 1.25922 0.95483 1.04166 0.94361 1.70009 1.45315 1.38635 0.99415 0.85024 0.78419 0.77604 0.77976 1.19692 1.22288 1.18148 1.18861 0.87583 0.97349 0.86248 1.29683 0.94774 0.88425 0.91770 1.80835 1.11996 1.15407 1.11812 1.19406 0.96558 0.94550 0.94221 1.21183 0.99857 0.93981 0.96856 1.21260 0.96328 1.00992 0.92723 1.21361 1.00888 0.92739 1.02217 1.17753 0.95256 0.91962 0.89309 1.91459 1.72549 1.81438 1.67180 1.21129 1.00173 1.01733 0.94205 0.93342 0.89566 0.92390 0.91688 0.85102 0.87920 0.86441 0.82636 0.82562 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.90 71.98 0.64 -3.26 16 2 C -0.05 -1.84 2.13 -12.28 -0.03 -1.87 16 3 H 0.11 3.48 6.02 -2.39 -0.01 3.47 16 4 C 0.46 19.39 6.73 87.66 0.59 19.98 16 5 O -0.61 -27.96 14.08 -3.06 -0.04 -28.01 16 6 N -0.45 -19.65 2.59 -645.40 -1.67 -21.32 16 7 C -0.35 -15.16 8.97 84.04 0.75 -14.41 16 8 H 0.12 4.88 5.86 -2.91 -0.02 4.86 16 9 C 0.00 0.13 5.01 84.93 0.43 0.55 16 10 N -0.89 -42.46 8.90 21.67 0.19 -42.27 16 11 Si 0.98 35.64 29.61 68.60 2.03 37.67 16 12 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 13 H -0.30 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 15 C 0.23 9.75 5.27 84.58 0.45 10.19 16 16 C 0.27 12.91 13.62 89.45 1.22 14.13 16 17 N -0.52 -26.36 18.54 20.01 0.37 -25.99 16 18 C -0.05 -1.46 4.63 -19.87 -0.09 -1.55 16 19 C -0.10 -3.04 7.91 22.27 0.18 -2.87 16 20 C -0.10 -2.30 10.04 22.26 0.22 -2.08 16 21 C -0.15 -3.56 10.03 22.31 0.22 -3.33 16 22 C 0.08 2.04 7.30 22.38 0.16 2.20 16 23 F -0.15 -3.93 17.27 44.97 0.78 -3.16 16 24 C -0.15 -4.36 9.65 22.31 0.22 -4.14 16 25 H 0.05 1.56 7.54 -2.38 -0.02 1.54 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 1.98 7.88 -2.39 -0.02 1.96 16 28 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 29 H 0.13 5.63 6.15 -2.39 -0.01 5.61 16 30 H 0.10 4.10 7.28 -2.39 -0.02 4.08 16 31 H 0.12 3.87 6.98 -2.91 -0.02 3.85 16 32 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 34 H 0.14 3.63 7.95 -2.91 -0.02 3.60 16 Total: -1.00 -56.41 300.71 7.76 -48.65 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.14 Total: 20.88 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 4.96 Total: 13.55 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -1.11 Total: -89.58 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.04 Total: -28.01 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Total: -56.41 7.76 -48.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173372796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.226 kcal (2) G-P(sol) polarization free energy of solvation -56.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds