Wall clock time and date at job start Mon Mar 30 2020 01:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47060 * 2 1 4 4 C 1.50701 * 109.47153 * 119.99966 * 2 1 3 5 5 O 1.21298 * 119.99824 * 113.31319 * 4 2 1 6 6 N 1.34768 * 120.00249 * 293.32224 * 4 2 1 7 7 C 1.37105 * 119.99982 * 4.25046 * 6 4 2 8 8 H 1.07995 * 119.99744 * 356.87457 * 7 6 4 9 9 C 1.38952 * 120.00068 * 176.87883 * 7 6 4 10 10 N 1.31418 * 119.99728 * 331.47328 * 9 7 6 11 11 Si 1.86792 * 120.00089 * 151.48047 * 9 7 6 12 12 H 1.48499 * 109.47537 * 89.99728 * 11 9 7 13 13 H 1.48504 * 109.46953 * 209.99625 * 11 9 7 14 14 H 1.48501 * 109.47178 * 329.99477 * 11 9 7 15 15 C 1.46503 * 120.00343 * 184.25472 * 6 4 2 16 16 C 1.47202 * 109.47093 * 265.83838 * 15 6 4 17 17 N 5.35474 * 80.25420 * 117.35928 * 2 1 3 18 18 C 1.50696 * 109.47057 * 239.99947 * 2 1 3 19 19 C 1.38268 * 119.98764 * 119.99566 * 18 2 1 20 20 C 1.38218 * 120.05308 * 179.97438 * 19 18 2 21 21 C 1.38224 * 120.02606 * 0.02562 * 20 19 18 22 22 C 1.38440 * 119.97431 * 359.97438 * 21 20 19 23 23 F 1.35098 * 120.02544 * 180.02562 * 22 21 20 24 24 C 1.38184 * 119.99027 * 299.72990 * 18 2 1 25 25 H 1.09000 * 109.46642 * 298.59020 * 1 2 3 26 26 H 1.08997 * 109.46911 * 58.59459 * 1 2 3 27 27 H 1.09006 * 109.47246 * 178.59873 * 1 2 3 28 28 H 0.96997 * 119.99757 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.46736 * 25.83860 * 15 6 4 30 30 H 1.09000 * 109.47445 * 145.83749 * 15 6 4 31 31 H 1.07997 * 119.97062 * 0.03249 * 19 18 2 32 32 H 1.08000 * 119.99167 * 180.02562 * 20 19 18 33 33 H 1.07999 * 120.01449 * 180.02562 * 21 20 19 34 34 H 1.08005 * 120.00595 * 359.97438 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.6265 -1.7625 1.1233 6 7 1.8214 -0.1769 2.4500 7 6 1.0750 0.9660 2.5784 8 1 0.6987 1.4668 1.6988 9 6 0.8030 1.4799 3.8404 10 7 0.7364 0.6752 4.8772 11 14 0.5317 3.3146 4.0632 12 1 -0.9110 3.6253 3.8981 13 1 0.9727 3.7187 5.4224 14 1 1.3177 4.0583 3.0462 15 6 2.3896 -0.8181 3.6384 16 6 1.3928 -1.7253 4.2303 17 7 0.6236 -2.4254 4.6871 18 6 2.0323 -0.7104 -1.2304 19 6 2.8272 -0.0382 -2.1405 20 6 3.2891 -0.6886 -3.2692 21 6 2.9564 -2.0119 -3.4898 22 6 2.1606 -2.6861 -2.5793 23 9 1.8352 -3.9797 -2.7936 24 6 1.7030 -2.0350 -1.4461 25 1 -0.3632 0.4918 0.9024 26 1 -0.3633 0.5355 -0.8771 27 1 -0.3634 -1.0274 -0.0251 28 1 0.5462 1.0339 5.7581 29 1 3.2757 -1.3865 3.3559 30 1 2.6642 -0.0551 4.3667 31 1 3.0880 0.9956 -1.9687 32 1 3.9102 -0.1627 -3.9792 33 1 3.3177 -2.5201 -4.3716 34 1 1.0860 -2.5612 -0.7327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173372812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:16 Heat of formation + Delta-G solvation = -15.354617 kcal Electronic energy + Delta-G solvation = -21037.536380 eV Core-core repulsion = 17657.677474 eV Total energy + Delta-G solvation = -3379.858905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.61126 -39.73504 -38.24788 -35.68330 -34.44478 -33.57859 -31.78467 -30.28401 -29.41411 -27.35832 -25.24769 -23.91214 -22.39260 -21.43287 -19.23617 -18.20762 -16.95937 -16.54081 -16.11474 -15.91825 -15.63736 -15.30058 -14.59588 -14.49668 -13.99477 -13.63526 -13.43707 -13.19897 -12.97445 -12.62464 -12.27805 -12.02168 -11.77595 -11.74590 -11.52812 -11.33086 -11.30494 -11.16783 -10.73927 -10.68272 -10.55294 -10.32258 -10.18189 -9.34150 -8.70853 -8.62030 -8.33952 -8.26430 -6.69391 -4.09453 1.41512 1.51455 2.97271 3.12245 3.14573 3.51949 3.70252 3.91053 4.03380 4.22616 4.49811 4.70415 4.77377 4.92042 5.07792 5.25360 5.42806 5.47866 5.64492 5.72187 5.79165 5.81411 6.12142 6.22604 6.28091 6.35018 6.41955 6.47241 6.52712 6.62097 6.72076 6.90288 7.15753 7.24346 7.34822 8.06848 8.81425 8.93555 9.18081 9.58804 10.35086 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.005637 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.024651 B = 4965.914502 C = 5762.792247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 H 0.101 0.899 4 C 0.466 3.534 5 O -0.592 6.592 6 N -0.437 5.437 7 C -0.355 4.355 8 H 0.117 0.883 9 C 0.044 3.956 10 N -0.855 5.855 11 Si 0.915 3.085 12 H -0.277 1.277 13 H -0.280 1.280 14 H -0.266 1.266 15 C 0.228 3.772 16 C 0.260 3.740 17 N -0.485 5.485 18 C -0.024 4.024 19 C -0.127 4.127 20 C -0.099 4.099 21 C -0.164 4.164 22 C 0.089 3.911 23 F -0.146 7.146 24 C -0.110 4.110 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.276 0.724 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 3.694 -11.137 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 H 0.119 0.881 4 C 0.254 3.746 5 O -0.477 6.477 6 N -0.156 5.156 7 C -0.481 4.481 8 H 0.135 0.865 9 C -0.163 4.163 10 N -0.491 5.491 11 Si 0.740 3.260 12 H -0.203 1.203 13 H -0.206 1.206 14 H -0.191 1.191 15 C 0.101 3.899 16 C -0.058 4.058 17 N -0.166 5.166 18 C -0.024 4.024 19 C -0.145 4.145 20 C -0.117 4.117 21 C -0.183 4.183 22 C 0.070 3.930 23 F -0.125 7.125 24 C -0.129 4.129 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.072 2.111 -10.269 10.925 hybrid contribution -0.087 1.036 0.186 1.057 sum 2.985 3.148 -10.084 10.977 Atomic orbital electron populations 1.21981 0.92534 1.02528 1.03658 1.20036 0.97560 0.99829 0.90200 0.88100 1.19856 0.84177 0.86054 0.84466 1.90602 1.47039 1.23665 1.86430 1.43667 1.45402 1.23496 1.03054 1.19807 1.33293 1.00394 0.94612 0.86542 1.25208 0.96034 0.99980 0.95095 1.69976 1.43269 1.34676 1.01192 0.86129 0.78784 0.82857 0.78191 1.20315 1.20575 1.19053 1.18698 0.90017 0.93006 0.88134 1.29131 0.93863 0.90637 0.92149 1.80844 1.09932 1.15302 1.10501 1.19444 0.95231 0.93024 0.94724 1.21098 0.98416 1.00418 0.94547 1.20849 0.99589 0.93682 0.97611 1.21008 1.01198 0.95919 1.00181 1.17706 0.99928 0.78878 0.96495 1.91463 1.91297 1.34821 1.94883 1.20976 1.01352 0.95052 0.95541 0.88723 0.92691 0.92942 0.91265 0.89189 0.85992 0.85492 0.85473 0.85457 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.61 37.16 0.32 -2.13 16 2 C -0.06 -0.95 2.07 -92.92 -0.19 -1.14 16 3 H 0.10 1.58 7.42 -51.93 -0.39 1.20 16 4 C 0.47 9.89 6.89 -10.99 -0.08 9.82 16 5 O -0.59 -14.02 14.41 5.54 0.08 -13.94 16 6 N -0.44 -9.58 2.59 -117.93 -0.31 -9.88 16 7 C -0.36 -7.69 8.05 -14.93 -0.12 -7.81 16 8 H 0.12 2.32 4.90 -52.49 -0.26 2.06 16 9 C 0.04 0.96 4.89 -17.46 -0.09 0.87 16 10 N -0.85 -20.21 9.09 55.50 0.50 -19.70 16 11 Si 0.91 17.28 29.64 -169.99 -5.04 12.24 16 12 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 13 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 14 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 15 C 0.23 4.89 5.23 -6.83 -0.04 4.85 16 16 C 0.26 6.24 13.47 -20.76 -0.28 5.96 16 17 N -0.49 -12.42 18.54 42.15 0.78 -11.64 16 18 C -0.02 -0.39 4.47 -104.63 -0.47 -0.86 16 19 C -0.13 -1.73 9.67 -39.58 -0.38 -2.11 16 20 C -0.10 -1.21 10.04 -39.59 -0.40 -1.61 16 21 C -0.16 -2.19 10.03 -39.51 -0.40 -2.59 16 22 C 0.09 1.43 7.30 -39.42 -0.29 1.14 16 23 F -0.15 -2.41 17.27 2.25 0.04 -2.37 16 24 C -0.11 -1.93 7.82 -39.51 -0.31 -2.23 16 25 H 0.09 1.69 5.24 -51.93 -0.27 1.41 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.89 7.36 -51.93 -0.38 0.51 16 28 H 0.28 6.34 8.31 -40.82 -0.34 6.00 16 29 H 0.09 1.79 7.36 -51.93 -0.38 1.41 16 30 H 0.12 2.55 6.34 -51.93 -0.33 2.23 16 31 H 0.13 1.44 7.94 -52.49 -0.42 1.02 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 2.51 7.35 -52.48 -0.39 2.12 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -27.75 297.88 -5.37 -33.12 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.21 Total: 5.52 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.71 Total: 2.16 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.98 Total: -41.23 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.04 Total: 12.24 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.75 -5.37 -33.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173372812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.769 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds