Wall clock time and date at job start Mon Mar 30 2020 01:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48499 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47293 * 300.00114 * 3 2 1 6 6 H 1.48500 * 109.47106 * 60.00114 * 3 2 1 7 7 C 1.38708 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00211 * 179.97438 * 7 2 1 9 9 O 1.34816 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.35498 * 117.00238 * 185.06158 * 9 7 2 11 11 C 1.38838 * 120.16385 * 354.40902 * 10 9 7 12 12 C 1.38017 * 120.07918 * 180.02562 * 11 10 9 13 13 C 1.38597 * 120.41373 * 359.97322 * 12 11 10 14 14 C 1.37807 * 120.32919 * 0.02562 * 13 12 11 15 15 C 1.39727 * 119.91328 * 359.97438 * 14 13 12 16 16 C 1.47396 * 120.19979 * 180.02562 * 15 14 13 17 17 O 1.21513 * 119.99795 * 179.97438 * 16 15 14 18 18 O 1.34757 * 120.00382 * 359.96192 * 16 15 14 19 19 C 1.45191 * 117.00218 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.47105 * 179.97438 * 19 18 16 21 21 C 1.53775 * 113.61621 * 274.13342 * 20 19 18 22 22 C 1.53949 * 87.02273 * 220.04728 * 21 20 19 23 23 C 1.53783 * 87.11173 * 25.36505 * 22 21 20 24 24 H 0.97001 * 119.99808 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.96300 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.79742 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.83378 * 179.74866 * 13 12 11 28 28 H 1.08000 * 120.03714 * 179.97438 * 14 13 12 29 29 H 1.09003 * 109.47355 * 299.99477 * 19 18 16 30 30 H 1.09004 * 109.47686 * 59.99759 * 19 18 16 31 31 H 1.08998 * 112.85040 * 45.33496 * 20 19 18 32 32 H 1.08998 * 113.61882 * 334.57011 * 21 20 19 33 33 H 1.09004 * 113.61123 * 105.47501 * 21 20 19 34 34 H 1.08999 * 113.53892 * 270.81493 * 22 21 20 35 35 H 1.08997 * 113.67038 * 139.93311 * 22 21 20 36 36 H 1.08993 * 113.61914 * 220.08943 * 23 22 21 37 37 H 1.09004 * 113.68912 * 89.19378 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0087 -1.2013 -0.0005 8 1 3.0886 -1.2013 -0.0010 9 8 1.3346 -2.3688 -0.0005 10 6 2.0684 -3.5029 0.1054 11 6 3.4553 -3.4403 0.0911 12 6 4.2011 -4.5966 0.1986 13 6 3.5746 -5.8267 0.3221 14 6 2.1990 -5.9085 0.3382 15 6 1.4306 -4.7465 0.2303 16 6 -0.0411 -4.8266 0.2474 17 8 -0.7058 -3.8137 0.1537 18 8 -0.6495 -6.0231 0.3666 19 6 -2.1014 -6.0264 0.3756 20 6 -2.6072 -7.4635 0.5169 21 6 -2.7234 -8.2101 -0.8224 22 6 -4.0347 -8.8095 -0.2827 23 6 -4.1378 -7.5702 0.6221 24 1 -0.4850 0.8401 -0.0004 25 1 3.9512 -2.4856 -0.0051 26 1 5.2797 -4.5426 0.1866 27 1 4.1673 -6.7260 0.4015 28 1 1.7157 -6.8695 0.4342 29 1 -2.4609 -5.4303 1.2144 30 1 -2.4716 -5.6013 -0.5573 31 1 -2.0766 -8.0254 1.2854 32 1 -2.8646 -7.5510 -1.6790 33 1 -1.9373 -8.9485 -0.9803 34 1 -3.8943 -9.7405 0.2664 35 1 -4.8268 -8.8723 -1.0288 36 1 -4.4918 -7.7927 1.6286 37 1 -4.6663 -6.7351 0.1624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174539179.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:15 Heat of formation + Delta-G solvation = -70.264977 kcal Electronic energy + Delta-G solvation = -20813.483712 eV Core-core repulsion = 17522.411269 eV Total energy + Delta-G solvation = -3291.072443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88517 -39.02949 -38.22511 -36.41136 -35.33842 -32.41217 -30.79402 -29.00817 -28.69858 -25.70156 -25.47832 -23.81257 -22.46726 -21.50781 -20.18912 -19.43694 -18.07230 -17.44750 -16.60211 -16.10384 -15.74212 -15.22030 -14.75164 -14.52990 -14.37699 -13.83607 -13.79510 -13.52661 -12.99447 -12.74873 -12.53757 -12.47323 -11.78819 -11.76583 -11.61395 -11.35078 -11.11056 -10.94676 -10.82064 -10.63775 -10.51824 -10.47035 -10.42302 -9.88436 -9.72086 -9.21331 -8.93961 -8.32287 -7.37979 -6.51355 -4.11218 1.61365 2.30618 3.08570 3.09671 3.15424 3.30052 3.48771 3.88548 4.51269 4.56405 4.57460 4.68169 4.78808 5.01392 5.13739 5.32165 5.43553 5.53431 5.59783 5.61126 5.65439 5.68182 5.75906 5.79581 5.88451 5.93904 6.09453 6.13002 6.17918 6.41318 6.57845 6.65676 6.90014 7.02126 7.12849 7.23214 7.31933 7.65841 7.87303 8.76385 8.89050 9.58508 10.62531 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019085 B = 0.004665 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.755332 B = 6000.854632 C = 7349.900050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.403 4.403 8 H 0.097 0.903 9 O -0.126 6.126 10 C 0.191 3.809 11 C -0.239 4.239 12 C -0.044 4.044 13 C -0.235 4.235 14 C -0.016 4.016 15 C -0.216 4.216 16 C 0.496 3.504 17 O -0.478 6.478 18 O -0.366 6.366 19 C 0.078 3.922 20 C -0.109 4.109 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.132 4.132 24 H 0.272 0.728 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 -13.156 0.478 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.479 4.479 8 H 0.114 0.886 9 O -0.024 6.024 10 C 0.132 3.868 11 C -0.258 4.258 12 C -0.063 4.063 13 C -0.254 4.254 14 C -0.034 4.034 15 C -0.219 4.219 16 C 0.342 3.658 17 O -0.365 6.365 18 O -0.285 6.285 19 C 0.004 3.996 20 C -0.128 4.128 21 C -0.173 4.173 22 C -0.179 4.179 23 C -0.170 4.170 24 H 0.082 0.918 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.142 0.858 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.200 -12.581 0.422 12.779 hybrid contribution 0.436 0.916 0.006 1.015 sum -1.764 -11.665 0.429 11.805 Atomic orbital electron populations 1.70130 1.06051 1.27805 1.42361 1.25422 0.95836 0.99064 0.96028 0.85625 0.79210 0.80041 0.78413 1.18877 1.19947 1.19944 1.21587 0.92034 0.80924 1.53330 0.88589 1.84146 1.33824 1.11160 1.73250 1.19241 0.90024 0.87014 0.90564 1.21112 0.93015 0.99483 1.12226 1.20965 0.98767 0.92293 0.94233 1.20543 0.94109 0.97194 1.13542 1.20961 0.93525 0.96240 0.92666 1.18055 0.88500 0.92515 1.22801 1.21096 0.89154 0.80970 0.74610 1.90996 1.65908 1.35259 1.44333 1.86500 1.22020 1.34573 1.85380 1.22903 0.77890 0.96596 1.02207 1.22594 0.96062 0.94850 0.99250 1.23010 0.97563 0.99736 0.96965 1.22833 0.98206 0.97555 0.99354 1.22904 0.94981 0.98645 1.00467 0.91787 0.84836 0.86972 0.86996 0.85775 0.91590 0.91577 0.88240 0.89965 0.91179 0.90199 0.91414 0.91144 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.86 13.67 55.48 0.76 -24.10 16 2 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 3 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.40 -11.32 9.49 30.91 0.29 -11.02 16 8 H 0.10 2.44 5.21 -52.49 -0.27 2.16 16 9 O -0.13 -3.70 7.84 -21.00 -0.16 -3.87 16 10 C 0.19 4.78 6.66 -38.58 -0.26 4.53 16 11 C -0.24 -5.13 9.16 -39.44 -0.36 -5.49 16 12 C -0.04 -0.78 10.03 -39.53 -0.40 -1.17 16 13 C -0.23 -3.96 10.02 -39.61 -0.40 -4.36 16 14 C -0.02 -0.29 9.61 -39.18 -0.38 -0.66 16 15 C -0.22 -4.91 5.89 -104.83 -0.62 -5.53 16 16 C 0.50 11.59 7.89 34.46 0.27 11.86 16 17 O -0.48 -13.21 14.96 -26.59 -0.40 -13.61 16 18 O -0.37 -6.98 9.47 -40.65 -0.38 -7.36 16 19 C 0.08 1.26 5.30 37.16 0.20 1.45 16 20 C -0.11 -1.31 4.01 -89.80 -0.36 -1.67 16 21 C -0.14 -1.46 7.65 -25.83 -0.20 -1.65 16 22 C -0.14 -1.26 8.09 -25.83 -0.21 -1.47 16 23 C -0.13 -1.31 7.65 -25.91 -0.20 -1.51 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 26 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.12 1.97 7.61 -52.49 -0.40 1.57 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.09 7.87 -51.93 -0.41 0.68 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 319.35 15.07 4.81 4.81 Total: -1.00 -32.95 319.35 -7.83 -40.78 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.73 Total: 3.65 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.70 Total: -15.57 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.76 Total: -24.10 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.95 Total: -24.84 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.95 -7.83 -40.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174539179.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.484 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds