Wall clock time and date at job start Mon Mar 30 2020 01:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48499 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47293 * 300.00114 * 3 2 1 6 6 H 1.48500 * 109.47106 * 60.00114 * 3 2 1 7 7 C 1.38708 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00211 * 179.97438 * 7 2 1 9 9 O 1.34816 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.35498 * 117.00238 * 185.06158 * 9 7 2 11 11 C 1.38838 * 120.16385 * 354.40902 * 10 9 7 12 12 C 1.38017 * 120.07918 * 180.02562 * 11 10 9 13 13 C 1.38597 * 120.41373 * 359.97322 * 12 11 10 14 14 C 1.37807 * 120.32919 * 0.02562 * 13 12 11 15 15 C 1.39727 * 119.91328 * 359.97438 * 14 13 12 16 16 C 1.47396 * 120.19979 * 180.02562 * 15 14 13 17 17 O 1.21513 * 119.99795 * 179.97438 * 16 15 14 18 18 O 1.34757 * 120.00382 * 359.96192 * 16 15 14 19 19 C 1.45191 * 117.00218 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.47105 * 179.97438 * 19 18 16 21 21 C 1.53775 * 113.61621 * 274.13342 * 20 19 18 22 22 C 1.53949 * 87.02273 * 220.04728 * 21 20 19 23 23 C 1.53783 * 87.11173 * 25.36505 * 22 21 20 24 24 H 0.97001 * 119.99808 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.96300 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.79742 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.83378 * 179.74866 * 13 12 11 28 28 H 1.08000 * 120.03714 * 179.97438 * 14 13 12 29 29 H 1.09003 * 109.47355 * 299.99477 * 19 18 16 30 30 H 1.09004 * 109.47686 * 59.99759 * 19 18 16 31 31 H 1.08998 * 112.85040 * 45.33496 * 20 19 18 32 32 H 1.08998 * 113.61882 * 334.57011 * 21 20 19 33 33 H 1.09004 * 113.61123 * 105.47501 * 21 20 19 34 34 H 1.08999 * 113.53892 * 270.81493 * 22 21 20 35 35 H 1.08997 * 113.67038 * 139.93311 * 22 21 20 36 36 H 1.08993 * 113.61914 * 220.08943 * 23 22 21 37 37 H 1.09004 * 113.68912 * 89.19378 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0087 -1.2013 -0.0005 8 1 3.0886 -1.2013 -0.0010 9 8 1.3346 -2.3688 -0.0005 10 6 2.0684 -3.5029 0.1054 11 6 3.4553 -3.4403 0.0911 12 6 4.2011 -4.5966 0.1986 13 6 3.5746 -5.8267 0.3221 14 6 2.1990 -5.9085 0.3382 15 6 1.4306 -4.7465 0.2303 16 6 -0.0411 -4.8266 0.2474 17 8 -0.7058 -3.8137 0.1537 18 8 -0.6495 -6.0231 0.3666 19 6 -2.1014 -6.0264 0.3756 20 6 -2.6072 -7.4635 0.5169 21 6 -2.7234 -8.2101 -0.8224 22 6 -4.0347 -8.8095 -0.2827 23 6 -4.1378 -7.5702 0.6221 24 1 -0.4850 0.8401 -0.0004 25 1 3.9512 -2.4856 -0.0051 26 1 5.2797 -4.5426 0.1866 27 1 4.1673 -6.7260 0.4015 28 1 1.7157 -6.8695 0.4342 29 1 -2.4609 -5.4303 1.2144 30 1 -2.4716 -5.6013 -0.5573 31 1 -2.0766 -8.0254 1.2854 32 1 -2.8646 -7.5510 -1.6790 33 1 -1.9373 -8.9485 -0.9803 34 1 -3.8943 -9.7405 0.2664 35 1 -4.8268 -8.8723 -1.0288 36 1 -4.4918 -7.7927 1.6286 37 1 -4.6663 -6.7351 0.1624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174539179.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:15 Heat of formation + Delta-G solvation = -89.466524 kcal Electronic energy + Delta-G solvation = -20814.316353 eV Core-core repulsion = 17522.411269 eV Total energy + Delta-G solvation = -3291.905085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59029 -40.51999 -39.50975 -38.13482 -37.08833 -34.38526 -32.42487 -30.65897 -29.96214 -27.45806 -26.53762 -25.31432 -23.75148 -23.13681 -21.84514 -20.37934 -19.92376 -19.18142 -18.33306 -17.59101 -17.35559 -16.46706 -16.29275 -16.12942 -15.78470 -15.59660 -15.32364 -15.01399 -14.52797 -14.42228 -13.99323 -13.58393 -13.38069 -13.10379 -12.89933 -12.75800 -12.68277 -12.57826 -12.36836 -12.09912 -11.81440 -11.64458 -11.52518 -11.33805 -11.09344 -10.97486 -10.88087 -9.93473 -9.12948 -8.49783 -6.21165 -0.05451 0.68020 1.32685 1.43201 1.52848 1.72786 1.73075 2.13368 2.81050 3.13800 3.36100 3.56159 3.66455 3.70142 3.92354 4.03069 4.10036 4.21008 4.26165 4.38902 4.42376 4.51626 4.61560 4.81789 4.82919 4.87097 4.95260 5.04233 5.08256 5.10490 5.12159 5.27333 5.39704 5.46747 5.57188 5.60467 5.65544 5.92217 6.11784 6.88955 6.98218 7.70617 8.70832 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019085 B = 0.004665 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.755332 B = 6000.854632 C = 7349.900050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.021 4.021 3 Si 1.025 2.975 4 H -0.243 1.243 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.428 4.428 8 H 0.112 0.888 9 O -0.189 6.189 10 C 0.157 3.843 11 C -0.256 4.256 12 C -0.027 4.027 13 C -0.203 4.203 14 C -0.012 4.012 15 C -0.239 4.239 16 C 0.496 3.504 17 O -0.534 6.534 18 O -0.351 6.351 19 C 0.072 3.928 20 C -0.109 4.109 21 C -0.140 4.140 22 C -0.127 4.127 23 C -0.131 4.131 24 H 0.272 0.728 25 H 0.131 0.869 26 H 0.162 0.838 27 H 0.167 0.833 28 H 0.156 0.844 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -16.423 0.843 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.220 4.220 3 Si 0.843 3.157 4 H -0.166 1.166 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.504 4.504 8 H 0.130 0.870 9 O -0.091 6.091 10 C 0.101 3.899 11 C -0.275 4.275 12 C -0.045 4.045 13 C -0.221 4.221 14 C -0.030 4.030 15 C -0.242 4.242 16 C 0.343 3.657 17 O -0.425 6.425 18 O -0.269 6.269 19 C -0.002 4.002 20 C -0.128 4.128 21 C -0.177 4.177 22 C -0.165 4.165 23 C -0.169 4.169 24 H 0.082 0.918 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.184 0.816 28 H 0.174 0.826 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.534 -15.944 0.791 15.973 hybrid contribution -0.270 1.470 -0.077 1.496 sum 0.263 -14.474 0.714 14.494 Atomic orbital electron populations 1.70314 1.08477 1.28776 1.46458 1.26817 0.96756 1.03224 0.95239 0.84463 0.78542 0.74178 0.78517 1.16576 1.19348 1.19402 1.22158 0.92952 0.81433 1.53829 0.87035 1.84149 1.35527 1.12375 1.77060 1.19991 0.91908 0.86919 0.91047 1.21296 0.91714 1.01312 1.13190 1.21543 1.01060 0.90971 0.90895 1.21233 0.93523 0.98809 1.08579 1.21391 0.94467 0.95768 0.91351 1.18517 0.88616 0.93533 1.23516 1.21477 0.89825 0.81190 0.73177 1.90980 1.67191 1.37363 1.46975 1.86485 1.23803 1.32151 1.84437 1.23250 0.76059 0.99739 1.01131 1.22732 0.97544 0.91790 1.00693 1.23045 0.99207 0.99674 0.95779 1.22800 0.97115 0.97472 0.99068 1.22947 0.92966 0.99228 1.01724 0.91845 0.85110 0.82083 0.81570 0.82624 0.92843 0.92820 0.87145 0.91054 0.90373 0.88390 0.90321 0.89686 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.47 13.67 21.62 0.30 -58.17 16 2 C -0.02 -1.22 5.49 84.85 0.47 -0.75 16 3 Si 1.02 43.38 29.55 68.60 2.03 45.40 16 4 H -0.24 -9.21 7.11 99.48 0.71 -8.51 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.43 -25.52 9.49 67.93 0.64 -24.87 16 8 H 0.11 5.90 5.21 -2.91 -0.02 5.88 16 9 O -0.19 -11.96 7.84 1.06 0.01 -11.95 16 10 C 0.16 8.11 6.66 22.92 0.15 8.27 16 11 C -0.26 -10.76 9.16 22.36 0.20 -10.55 16 12 C -0.03 -0.82 10.03 22.30 0.22 -0.60 16 13 C -0.20 -5.64 10.02 22.25 0.22 -5.42 16 14 C -0.01 -0.40 9.61 22.53 0.22 -0.18 16 15 C -0.24 -11.00 5.89 -20.00 -0.12 -11.12 16 16 C 0.50 24.29 7.89 70.23 0.55 24.84 16 17 O -0.53 -32.03 14.96 26.79 0.40 -31.63 16 18 O -0.35 -13.61 9.47 -56.68 -0.54 -14.15 16 19 C 0.07 2.41 5.30 71.98 0.38 2.79 16 20 C -0.11 -2.51 4.01 -10.27 -0.04 -2.55 16 21 C -0.14 -2.79 7.65 31.18 0.24 -2.55 16 22 C -0.13 -1.93 8.09 31.18 0.25 -1.68 16 23 C -0.13 -2.41 7.65 31.12 0.24 -2.17 16 24 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 25 H 0.13 5.46 5.64 -2.91 -0.02 5.45 16 26 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 27 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 28 H 0.16 4.24 7.61 -2.91 -0.02 4.21 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.91 7.87 -2.38 -0.02 1.89 16 31 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 1.58 7.92 -2.39 -0.02 1.56 16 33 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.53 8.10 -2.38 -0.02 1.51 16 Total: -1.00 -81.61 319.35 6.91 -74.70 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.08 Total: 22.32 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 3.64 Total: -26.54 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.30 Total: -58.17 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -0.13 Total: -57.72 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -81.61 6.91 -74.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174539179.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.765 kcal (2) G-P(sol) polarization free energy of solvation -81.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds