Wall clock time and date at job start Mon Mar 30 2020 01:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00162 * 2 1 4 4 H 1.48499 * 109.47144 * 269.99805 * 3 2 1 5 5 H 1.48499 * 109.47271 * 30.00365 * 3 2 1 6 6 H 1.48498 * 109.47205 * 149.99976 * 3 2 1 7 7 C 1.37879 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47104 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47426 * 179.97438 * 10 9 7 12 12 C 1.34234 * 117.00567 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99612 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00230 * 180.02562 * 12 11 10 15 15 H 1.09004 * 109.20147 * 55.39829 * 14 12 11 16 16 O 1.42721 * 109.33605 * 174.99923 * 14 12 11 17 17 C 1.43210 * 113.13724 * 172.00787 * 16 14 12 18 18 C 1.52975 * 108.64357 * 289.22484 * 17 16 14 19 19 C 1.51207 * 109.51464 * 49.17454 * 18 17 16 20 20 C 1.38591 * 118.68630 * 163.27887 * 19 18 17 21 21 C 1.38071 * 120.27562 * 179.60053 * 20 19 18 22 22 C 1.38260 * 119.86233 * 359.97438 * 21 20 19 23 23 C 1.38058 * 119.89749 * 0.09639 * 22 21 20 24 24 C 1.37904 * 121.42383 * 343.02984 * 19 18 17 25 25 H 0.96997 * 119.99662 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47529 * 59.99780 * 9 7 2 27 27 H 1.09004 * 109.46493 * 299.99262 * 9 7 2 28 28 H 1.09003 * 109.47085 * 59.99408 * 10 9 7 29 29 H 1.09004 * 109.47199 * 299.99600 * 10 9 7 30 30 H 1.09002 * 109.63839 * 49.02373 * 17 16 14 31 31 H 1.08999 * 109.63611 * 169.42871 * 17 16 14 32 32 H 1.08996 * 109.42140 * 169.42159 * 18 17 16 33 33 H 1.09003 * 109.42032 * 289.24240 * 18 17 16 34 34 H 1.07996 * 119.85979 * 359.59305 * 20 19 18 35 35 H 1.07998 * 120.06746 * 179.97438 * 21 20 19 36 36 H 1.07996 * 120.05477 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.85035 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9196 0.0011 12 6 2.2502 -6.0454 0.0018 13 8 3.4568 -5.9822 0.0013 14 6 1.5660 -7.3881 0.0018 15 1 0.8828 -7.4424 -0.8458 16 8 2.5469 -8.4183 -0.1149 17 6 2.0057 -9.7328 0.0590 18 6 1.6293 -9.9160 1.5304 19 6 0.8110 -8.7319 1.9936 20 6 0.0772 -8.8473 3.1637 21 6 -0.6750 -7.7838 3.6213 22 6 -0.6959 -6.5986 2.9096 23 6 0.0336 -6.4833 1.7432 24 6 0.7876 -7.5513 1.2814 25 1 -0.4849 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5566 0.8904 28 1 2.8719 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 1.1184 -9.8489 -0.5633 31 1 2.7512 -10.4761 -0.2237 32 1 1.0482 -10.8310 1.6446 33 1 2.5366 -9.9866 2.1305 34 1 0.0938 -9.7730 3.7197 35 1 -1.2459 -7.8775 4.5332 36 1 -1.2829 -5.7646 3.2649 37 1 0.0164 -5.5573 1.1877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178860380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:44 Heat of formation + Delta-G solvation = -112.603367 kcal Electronic energy + Delta-G solvation = -21022.172775 eV Core-core repulsion = 17729.264401 eV Total energy + Delta-G solvation = -3292.908374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.89283 -39.41838 -37.74479 -36.02541 -33.47312 -33.19345 -32.05803 -30.26347 -29.62379 -26.78975 -24.89668 -24.04849 -22.73821 -21.18777 -20.72247 -20.16573 -17.83845 -17.13071 -16.75787 -16.37380 -15.83401 -15.77607 -15.51896 -15.21396 -14.53362 -14.31594 -13.93306 -13.56552 -13.29824 -13.13718 -12.70073 -12.52967 -12.37696 -12.08461 -11.88265 -11.36216 -11.19083 -10.97300 -10.84489 -10.72333 -10.69993 -10.24738 -9.91677 -9.67329 -9.66035 -9.32243 -8.82471 -8.71594 -8.45931 -6.12232 -4.16451 1.14726 1.31978 2.49378 2.64633 3.28035 3.34153 3.38318 3.66634 3.91161 4.37261 4.39705 4.45065 4.61654 4.87587 4.95822 5.00167 5.06995 5.10010 5.24264 5.24693 5.35189 5.54357 5.62418 5.65874 5.88411 6.02137 6.06729 6.08200 6.35481 6.42270 6.51870 6.60628 6.78402 6.87771 6.95855 7.52888 7.58976 7.84658 8.14812 8.23090 8.88842 9.48153 10.99196 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.004083 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.914463 B = 6855.501208 C = 7677.354613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.074 3.926 11 O -0.353 6.353 12 C 0.466 3.534 13 O -0.491 6.491 14 C 0.144 3.856 15 H 0.107 0.893 16 O -0.349 6.349 17 C 0.059 3.941 18 C -0.116 4.116 19 C -0.068 4.068 20 C -0.126 4.126 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.098 4.098 24 C -0.123 4.123 25 H 0.263 0.737 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 -20.527 3.878 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.011 4.011 10 C 0.002 3.998 11 O -0.270 6.270 12 C 0.307 3.693 13 O -0.377 6.377 14 C 0.085 3.915 15 H 0.125 0.875 16 O -0.268 6.268 17 C -0.017 4.017 18 C -0.153 4.153 19 C -0.068 4.068 20 C -0.144 4.144 21 C -0.129 4.129 22 C -0.137 4.137 23 C -0.115 4.115 24 C -0.123 4.123 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.827 -20.297 3.843 20.738 hybrid contribution 0.263 0.931 0.147 0.978 sum -1.565 -19.366 3.989 19.835 Atomic orbital electron populations 1.69967 1.06076 1.27003 1.49776 1.24967 0.94913 0.99358 0.94814 0.86474 0.79796 0.82805 0.78266 1.20465 1.21048 1.19705 1.20975 0.93220 0.90065 1.52231 0.92233 1.19181 0.94146 0.88918 0.98897 1.23733 0.96538 0.78297 1.01221 1.86463 1.42143 1.15544 1.82851 1.22696 0.86463 0.86404 0.73734 1.90650 1.15372 1.87795 1.43923 1.20179 0.89138 0.85495 0.96737 0.87536 1.88161 1.32423 1.13877 1.92313 1.22726 0.99873 0.84166 0.94966 1.21243 1.00093 0.96276 0.97677 1.19518 0.97620 0.94428 0.95252 1.20978 0.98144 0.99246 0.96041 1.21196 0.98705 0.93331 0.99626 1.21210 0.99469 0.97898 0.95169 1.21677 0.94457 0.99018 0.96374 1.19709 1.00435 0.95103 0.97066 0.92707 0.95268 0.95291 0.92159 0.92075 0.92141 0.87567 0.89411 0.89451 0.85961 0.85878 0.85312 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 10 C 0.07 1.65 5.40 37.16 0.20 1.85 16 11 O -0.35 -6.96 7.61 -39.27 -0.30 -7.26 16 12 C 0.47 8.77 7.04 36.01 0.25 9.02 16 13 O -0.49 -10.70 16.25 -25.49 -0.41 -11.11 16 14 C 0.14 2.14 3.25 -29.06 -0.09 2.04 16 15 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 16 O -0.35 -5.09 9.97 -55.23 -0.55 -5.64 16 17 C 0.06 0.56 6.83 37.14 0.25 0.82 16 18 C -0.12 -1.05 6.04 -27.65 -0.17 -1.22 16 19 C -0.07 -0.81 5.79 -104.37 -0.60 -1.42 16 20 C -0.13 -1.34 9.67 -39.51 -0.38 -1.72 16 21 C -0.11 -1.21 10.05 -39.63 -0.40 -1.60 16 22 C -0.12 -1.52 10.05 -39.64 -0.40 -1.92 16 23 C -0.10 -1.43 9.04 -39.50 -0.36 -1.79 16 24 C -0.12 -1.73 5.46 -104.61 -0.57 -2.31 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 29 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 30 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.15 2.44 5.53 -52.49 -0.29 2.14 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -32.35 315.47 -8.52 -40.87 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.90 Total: -1.50 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.82 Total: -11.12 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.74 Total: -25.30 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.26 Total: -24.01 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.35 -8.52 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178860380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.736 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds