Wall clock time and date at job start Mon Mar 30 2020 01:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00055 * 2 1 4 4 H 1.48503 * 109.47006 * 270.00491 * 3 2 1 5 5 H 1.48500 * 109.46733 * 30.00172 * 3 2 1 6 6 H 1.48496 * 109.47008 * 150.00198 * 3 2 1 7 7 C 1.37873 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99835 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00223 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47213 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46779 * 180.02562 * 10 9 7 12 12 C 1.34228 * 116.99731 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00246 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00031 * 179.97438 * 12 11 10 15 15 H 1.08994 * 109.34057 * 305.31786 * 14 12 11 16 16 O 1.42728 * 109.21154 * 185.71785 * 14 12 11 17 17 C 1.43219 * 113.12644 * 188.04929 * 16 14 12 18 18 C 1.52972 * 108.47875 * 70.69046 * 17 16 14 19 19 C 1.50746 * 109.76892 * 310.81915 * 18 17 16 20 20 C 1.38594 * 118.76900 * 196.82412 * 19 18 17 21 21 C 1.38077 * 120.27803 * 180.30200 * 20 19 18 22 22 C 1.38264 * 119.86086 * 359.95406 * 21 20 19 23 23 C 1.38052 * 119.89427 * 359.92276 * 22 21 20 24 24 C 1.37901 * 121.34848 * 16.96457 * 19 18 17 25 25 H 0.97002 * 120.00174 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47219 * 59.99246 * 9 7 2 27 27 H 1.08995 * 109.47113 * 299.99944 * 9 7 2 28 28 H 1.08989 * 109.47110 * 59.99679 * 10 9 7 29 29 H 1.09000 * 109.46979 * 299.99689 * 10 9 7 30 30 H 1.08998 * 109.63609 * 190.38621 * 17 16 14 31 31 H 1.08996 * 109.63178 * 310.99441 * 17 16 14 32 32 H 1.09003 * 109.42287 * 70.90543 * 18 17 16 33 33 H 1.08994 * 109.41961 * 190.78807 * 18 17 16 34 34 H 1.07999 * 119.86475 * 0.31586 * 20 19 18 35 35 H 1.07997 * 120.06851 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.05154 * 179.91183 * 22 21 20 37 37 H 1.07996 * 119.85024 * 180.35008 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 8 5.4735 -2.6365 -0.0009 12 6 6.0829 -3.8325 -0.0014 13 8 5.4249 -4.8458 -0.0013 14 6 7.5878 -3.9113 -0.0019 15 1 7.9791 -3.3363 -0.8411 16 8 7.9866 -5.2751 -0.1366 17 6 9.3950 -5.4691 0.0362 18 6 9.7369 -5.2523 1.5114 19 6 9.1257 -3.9608 1.9920 20 6 9.5928 -3.3996 3.1700 21 6 9.0510 -2.2206 3.6422 22 6 8.0389 -1.5968 2.9363 23 6 7.5750 -2.1538 1.7615 24 6 8.1181 -3.3377 1.2863 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.6578 -3.1505 -0.8906 29 1 3.6585 -3.1501 0.8893 30 1 9.6637 -6.4840 -0.2567 31 1 9.9413 -4.7513 -0.5757 32 1 9.3431 -6.0807 2.1003 33 1 10.8194 -5.2060 1.6295 34 1 10.3839 -3.8863 3.7209 35 1 9.4172 -1.7865 4.5608 36 1 7.6120 -0.6752 3.3036 37 1 6.7883 -1.6630 1.2078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178860389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:46 Heat of formation + Delta-G solvation = -108.777591 kcal Electronic energy + Delta-G solvation = -21091.087548 eV Core-core repulsion = 17798.345073 eV Total energy + Delta-G solvation = -3292.742476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98004 -39.51671 -37.81773 -36.13318 -33.50375 -33.22741 -32.13566 -30.72049 -29.71013 -26.92879 -25.04555 -24.12759 -22.76599 -21.05835 -20.68284 -20.24326 -17.94481 -17.22710 -16.88450 -16.71916 -15.98159 -15.85662 -15.58746 -15.29643 -14.41864 -14.23707 -14.01268 -13.66171 -13.44340 -13.32119 -12.81058 -12.73697 -12.47952 -12.16507 -11.95834 -11.54923 -11.44669 -11.10057 -10.92245 -10.70473 -10.59218 -10.03244 -9.98482 -9.95398 -9.72968 -9.37247 -8.90698 -8.78978 -8.64331 -6.14547 -4.16050 1.06881 1.23686 2.41234 2.56235 3.25959 3.33467 3.36611 3.58643 3.83887 4.31914 4.36386 4.39252 4.55575 4.80116 4.88294 4.91614 4.99185 5.01653 5.18585 5.18850 5.28269 5.47822 5.54336 5.59556 5.80856 5.91151 5.94113 5.97368 6.27495 6.33285 6.40409 6.44044 6.67256 6.73992 6.85066 7.14361 7.17868 7.59898 8.06610 8.37813 8.87306 9.44606 10.98043 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.004518 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.866307 B = 6195.684462 C = 7073.724074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.008 4.008 10 C 0.082 3.918 11 O -0.357 6.357 12 C 0.467 3.533 13 O -0.486 6.486 14 C 0.144 3.856 15 H 0.108 0.892 16 O -0.349 6.349 17 C 0.060 3.940 18 C -0.117 4.117 19 C -0.066 4.066 20 C -0.125 4.125 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.099 4.099 24 C -0.122 4.122 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.830 -5.980 3.927 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.010 3.990 11 O -0.275 6.275 12 C 0.308 3.692 13 O -0.372 6.372 14 C 0.085 3.915 15 H 0.125 0.875 16 O -0.267 6.267 17 C -0.017 4.017 18 C -0.154 4.154 19 C -0.066 4.066 20 C -0.143 4.143 21 C -0.128 4.128 22 C -0.138 4.138 23 C -0.117 4.117 24 C -0.123 4.123 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 23.274 -6.313 3.887 24.426 hybrid contribution 0.350 1.016 0.145 1.084 sum 23.624 -5.297 4.032 24.544 Atomic orbital electron populations 1.69895 1.06290 1.27221 1.50017 1.24930 0.94754 0.99145 0.94114 0.86758 0.80406 0.83325 0.78749 1.20036 1.21166 1.18767 1.20833 0.88218 0.95085 1.52459 0.90613 1.19635 0.97078 0.89963 0.97895 1.23469 0.71719 1.01763 1.02088 1.86423 1.26597 1.31342 1.83113 1.22664 0.90062 0.82683 0.73829 1.90669 1.66486 1.36506 1.43583 1.20176 0.89521 0.85238 0.96577 0.87519 1.88174 1.23808 1.22713 1.92047 1.22742 0.81221 1.02825 0.94896 1.21172 1.01083 0.95519 0.97633 1.19436 0.95991 0.96023 0.95200 1.20995 1.00901 0.96523 0.95886 1.21197 0.96492 0.95473 0.99622 1.21191 0.97019 1.00439 0.95191 1.21620 0.99273 0.94434 0.96351 1.19711 0.98513 0.97075 0.96999 0.92406 0.95361 0.95716 0.91446 0.91513 0.87460 0.92113 0.89350 0.89398 0.85883 0.85836 0.85404 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.53 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.01 -0.20 4.42 -27.88 -0.12 -0.32 16 10 C 0.08 1.74 5.40 37.16 0.20 1.94 16 11 O -0.36 -6.65 7.67 -39.25 -0.30 -6.95 16 12 C 0.47 8.43 7.03 36.00 0.25 8.68 16 13 O -0.49 -10.34 16.24 -25.50 -0.41 -10.75 16 14 C 0.14 2.04 3.25 -29.06 -0.09 1.94 16 15 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 16 O -0.35 -4.89 9.96 -55.28 -0.55 -5.44 16 17 C 0.06 0.54 6.85 37.14 0.25 0.79 16 18 C -0.12 -1.01 6.00 -27.87 -0.17 -1.17 16 19 C -0.07 -0.75 5.78 -104.59 -0.60 -1.36 16 20 C -0.13 -1.25 9.67 -39.51 -0.38 -1.63 16 21 C -0.11 -1.12 10.05 -39.63 -0.40 -1.52 16 22 C -0.12 -1.43 10.05 -39.64 -0.40 -1.83 16 23 C -0.10 -1.36 9.04 -39.50 -0.36 -1.72 16 24 C -0.12 -1.64 5.46 -104.61 -0.57 -2.21 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 27 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 28 H 0.07 1.45 8.13 -51.94 -0.42 1.02 16 29 H 0.07 1.45 8.13 -51.93 -0.42 1.02 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.45 8.07 -51.93 -0.42 0.04 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.15 2.20 5.59 -52.49 -0.29 1.91 16 LS Contribution 311.92 15.07 4.70 4.70 Total: -1.00 -33.01 311.92 -8.15 -41.16 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.87 Total: -1.08 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.82 Total: -11.64 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.77 Total: -26.44 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.27 Total: -23.15 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.01 -8.15 -41.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178860389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.615 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds