Wall clock time and date at job start Mon Mar 30 2020 01:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00055 * 2 1 4 4 H 1.48503 * 109.47006 * 270.00491 * 3 2 1 5 5 H 1.48500 * 109.46733 * 30.00172 * 3 2 1 6 6 H 1.48496 * 109.47008 * 150.00198 * 3 2 1 7 7 C 1.37873 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99835 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00223 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47213 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46779 * 180.02562 * 10 9 7 12 12 C 1.34228 * 116.99731 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00246 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00031 * 179.97438 * 12 11 10 15 15 H 1.08994 * 109.34057 * 305.31786 * 14 12 11 16 16 O 1.42728 * 109.21154 * 185.71785 * 14 12 11 17 17 C 1.43219 * 113.12644 * 188.04929 * 16 14 12 18 18 C 1.52972 * 108.47875 * 70.69046 * 17 16 14 19 19 C 1.50746 * 109.76892 * 310.81915 * 18 17 16 20 20 C 1.38594 * 118.76900 * 196.82412 * 19 18 17 21 21 C 1.38077 * 120.27803 * 180.30200 * 20 19 18 22 22 C 1.38264 * 119.86086 * 359.95406 * 21 20 19 23 23 C 1.38052 * 119.89427 * 359.92276 * 22 21 20 24 24 C 1.37901 * 121.34848 * 16.96457 * 19 18 17 25 25 H 0.97002 * 120.00174 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47219 * 59.99246 * 9 7 2 27 27 H 1.08995 * 109.47113 * 299.99944 * 9 7 2 28 28 H 1.08989 * 109.47110 * 59.99679 * 10 9 7 29 29 H 1.09000 * 109.46979 * 299.99689 * 10 9 7 30 30 H 1.08998 * 109.63609 * 190.38621 * 17 16 14 31 31 H 1.08996 * 109.63178 * 310.99441 * 17 16 14 32 32 H 1.09003 * 109.42287 * 70.90543 * 18 17 16 33 33 H 1.08994 * 109.41961 * 190.78807 * 18 17 16 34 34 H 1.07999 * 119.86475 * 0.31586 * 20 19 18 35 35 H 1.07997 * 120.06851 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.05154 * 179.91183 * 22 21 20 37 37 H 1.07996 * 119.85024 * 180.35008 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 8 5.4735 -2.6365 -0.0009 12 6 6.0829 -3.8325 -0.0014 13 8 5.4249 -4.8458 -0.0013 14 6 7.5878 -3.9113 -0.0019 15 1 7.9791 -3.3363 -0.8411 16 8 7.9866 -5.2751 -0.1366 17 6 9.3950 -5.4691 0.0362 18 6 9.7369 -5.2523 1.5114 19 6 9.1257 -3.9608 1.9920 20 6 9.5928 -3.3996 3.1700 21 6 9.0510 -2.2206 3.6422 22 6 8.0389 -1.5968 2.9363 23 6 7.5750 -2.1538 1.7615 24 6 8.1181 -3.3377 1.2863 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.6578 -3.1505 -0.8906 29 1 3.6585 -3.1501 0.8893 30 1 9.6637 -6.4840 -0.2567 31 1 9.9413 -4.7513 -0.5757 32 1 9.3431 -6.0807 2.1003 33 1 10.8194 -5.2060 1.6295 34 1 10.3839 -3.8863 3.7209 35 1 9.4172 -1.7865 4.5608 36 1 7.6120 -0.6752 3.3036 37 1 6.7883 -1.6630 1.2078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178860389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:45 Heat of formation + Delta-G solvation = -128.123298 kcal Electronic energy + Delta-G solvation = -21091.926441 eV Core-core repulsion = 17798.345073 eV Total energy + Delta-G solvation = -3293.581368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.13935 -40.74138 -38.76414 -37.67348 -35.44397 -34.20291 -33.21607 -32.55357 -30.54066 -28.15304 -26.78726 -24.88683 -23.84072 -22.65657 -22.21558 -21.12237 -19.42376 -18.71381 -18.28922 -18.00386 -17.39878 -16.84814 -16.69818 -16.31494 -16.14910 -15.43521 -15.05661 -14.83569 -14.77079 -14.51749 -14.40309 -13.75042 -13.58585 -13.35348 -13.20685 -12.96734 -12.73539 -12.53603 -12.46935 -12.05836 -11.82895 -11.65461 -11.60645 -11.53328 -11.44024 -10.84228 -10.82066 -9.79194 -9.63149 -8.35083 -6.43860 0.17931 0.38942 0.98848 1.28266 1.38112 1.39827 1.52337 2.33862 2.73675 2.83657 2.99838 3.34762 3.43963 3.71335 3.85700 3.95858 4.10315 4.12980 4.19159 4.24014 4.30156 4.52423 4.55952 4.57738 4.70768 4.80376 4.91361 4.95610 5.04631 5.15410 5.26175 5.38282 5.45421 5.49617 5.51973 5.57779 5.85987 6.01857 6.14397 6.57499 6.62282 7.21208 8.81168 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.004518 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.866307 B = 6195.684462 C = 7073.724074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.544 4.544 8 H 0.033 0.967 9 C 0.000 4.000 10 C 0.092 3.908 11 O -0.347 6.347 12 C 0.464 3.536 13 O -0.526 6.526 14 C 0.153 3.847 15 H 0.131 0.869 16 O -0.379 6.379 17 C 0.050 3.950 18 C -0.114 4.114 19 C -0.073 4.073 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.143 4.143 25 H 0.271 0.729 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.716 -5.195 4.778 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.164 1.164 7 C -0.582 4.582 8 H 0.051 0.949 9 C -0.038 4.038 10 C 0.019 3.981 11 O -0.264 6.264 12 C 0.307 3.693 13 O -0.414 6.414 14 C 0.094 3.906 15 H 0.148 0.852 16 O -0.298 6.298 17 C -0.025 4.025 18 C -0.151 4.151 19 C -0.074 4.074 20 C -0.140 4.140 21 C -0.125 4.125 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.144 4.144 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.141 0.859 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.155 0.845 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 27.194 -5.542 4.737 28.154 hybrid contribution -0.838 0.645 -0.079 1.061 sum 26.356 -4.896 4.658 27.208 Atomic orbital electron populations 1.70045 1.08406 1.28668 1.51299 1.25955 0.95652 1.03599 0.93318 0.85604 0.79627 0.77549 0.79605 1.18739 1.20628 1.16440 1.21104 0.90726 0.93788 1.52603 0.94858 1.19457 0.94114 0.91468 0.98723 1.23039 0.73652 1.00250 1.01173 1.86443 1.24676 1.32122 1.83167 1.23678 0.91937 0.81583 0.72075 1.90644 1.67709 1.37530 1.45519 1.20180 0.85953 0.86170 0.98275 0.85193 1.88138 1.26941 1.22379 1.92357 1.23130 0.78789 1.04737 0.95815 1.21254 1.02970 0.93897 0.96975 1.19828 0.95339 0.96818 0.95371 1.21414 1.01092 0.96209 0.95294 1.21574 0.95396 0.95363 1.00172 1.21398 0.97796 1.01080 0.94872 1.21580 0.99799 0.95282 0.97480 1.19735 0.99913 0.97486 0.97252 0.92023 0.94356 0.94403 0.92292 0.92698 0.85196 0.90333 0.89467 0.85925 0.82609 0.82980 0.84548 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 2 C 0.01 0.74 5.47 84.65 0.46 1.21 16 3 Si 0.95 43.04 27.47 68.60 1.88 44.92 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 7 C -0.54 -31.68 9.66 25.60 0.25 -31.43 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C 0.00 -0.01 4.42 29.85 0.13 0.12 16 10 C 0.09 4.04 5.40 71.98 0.39 4.43 16 11 O -0.35 -13.13 7.67 -51.40 -0.39 -13.53 16 12 C 0.46 17.06 7.03 71.24 0.50 17.56 16 13 O -0.53 -23.12 16.24 28.43 0.46 -22.66 16 14 C 0.15 4.23 3.25 29.09 0.09 4.33 16 15 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 16 O -0.38 -10.21 9.96 -129.81 -1.29 -11.50 16 17 C 0.05 0.77 6.85 71.97 0.49 1.26 16 18 C -0.11 -1.57 6.00 29.85 0.18 -1.39 16 19 C -0.07 -1.47 5.78 -19.84 -0.11 -1.58 16 20 C -0.12 -2.00 9.67 22.32 0.22 -1.78 16 21 C -0.11 -1.86 10.05 22.24 0.22 -1.64 16 22 C -0.13 -2.97 10.05 22.23 0.22 -2.75 16 23 C -0.12 -3.33 9.04 22.32 0.20 -3.13 16 24 C -0.14 -3.67 5.46 -19.86 -0.11 -3.78 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.04 1.74 7.20 -2.39 -0.02 1.73 16 27 H 0.04 1.70 7.57 -2.39 -0.02 1.68 16 28 H 0.06 2.66 8.13 -2.39 -0.02 2.64 16 29 H 0.05 2.51 8.13 -2.39 -0.02 2.49 16 30 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 0.92 8.07 -2.39 -0.02 0.90 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.13 3.87 5.59 -2.91 -0.02 3.85 16 Total: -1.00 -74.37 311.92 5.11 -69.26 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.01 Total: 10.68 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 3.14 Total: -18.57 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.61 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -1.23 Total: -47.68 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Total: -74.37 5.11 -69.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178860389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.862 kcal (2) G-P(sol) polarization free energy of solvation -74.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds