Wall clock time and date at job start Mon Mar 30 2020 01:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47509 * 2 1 4 4 C 1.53002 * 109.46994 * 240.00600 * 2 1 3 5 5 C 1.50703 * 109.47054 * 175.00085 * 4 2 1 6 6 H 1.07994 * 120.00488 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99673 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99893 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00163 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46744 * 90.00230 * 9 7 5 11 11 H 1.48500 * 109.46945 * 210.00104 * 9 7 5 12 12 H 1.48498 * 109.46912 * 330.00071 * 9 7 5 13 13 S 1.80995 * 109.47449 * 120.00557 * 2 1 3 14 14 C 1.76205 * 100.00000 * 294.99856 * 13 2 1 15 15 N 1.31047 * 125.07543 * 0.02562 * 14 13 2 16 16 C 1.35881 * 109.62306 * 179.97438 * 15 14 13 17 17 C 1.39715 * 133.37843 * 179.97438 * 16 15 14 18 18 C 1.37695 * 119.77608 * 180.02562 * 17 16 15 19 19 C 1.38698 * 120.49633 * 359.97438 * 18 17 16 20 20 C 1.37975 * 120.43624 * 0.03957 * 19 18 17 21 21 C 1.38652 * 119.84956 * 359.97438 * 20 19 18 22 22 N 1.36634 * 125.07934 * 179.97438 * 14 13 2 23 23 C 1.46498 * 126.38526 * 0.06068 * 22 14 13 24 24 H 1.08992 * 109.47180 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46773 * 299.99614 * 1 2 3 26 26 H 1.08994 * 109.47219 * 59.99224 * 1 2 3 27 27 H 1.09004 * 109.46807 * 294.99507 * 4 2 1 28 28 H 1.09000 * 109.47486 * 54.99748 * 4 2 1 29 29 H 0.96992 * 120.00089 * 180.02562 * 8 7 5 30 30 H 1.07996 * 120.11366 * 0.35870 * 17 16 15 31 31 H 1.08003 * 119.74676 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.78201 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.07641 * 180.02562 * 20 19 18 34 34 H 1.09002 * 109.47062 * 269.95798 * 23 22 14 35 35 H 1.09008 * 109.47171 * 29.95375 * 23 22 14 36 36 H 1.08997 * 109.47164 * 149.95252 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0855 -0.5397 7 6 4.2304 -1.1934 -2.3580 8 7 5.5411 -1.1011 -2.4132 9 14 3.3015 -2.1096 -3.6949 10 1 2.9399 -1.1652 -4.7824 11 1 4.1604 -3.1900 -4.2428 12 1 2.0660 -2.7017 -3.1222 13 16 2.1334 -0.8533 1.4777 14 6 1.5440 0.2421 2.7257 15 7 0.8654 1.3410 2.5039 16 6 0.5709 1.9420 3.6865 17 6 -0.1165 3.1105 4.0241 18 6 -0.2532 3.4654 5.3474 19 6 0.2860 2.6711 6.3485 20 6 0.9679 1.5143 6.0317 21 6 1.1154 1.1416 4.7044 22 7 1.7254 0.0721 4.0693 23 6 2.4339 -1.0343 4.7174 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.7516 -1.7714 -1.2057 28 1 1.6053 -0.2616 -2.1370 29 1 6.0254 -1.5077 -3.1486 30 1 -0.5438 3.7306 3.2499 31 1 -0.7843 4.3691 5.6078 32 1 0.1716 2.9603 7.3828 33 1 1.3850 0.8999 6.8159 34 1 1.7317 -1.8405 4.9301 35 1 3.2183 -1.4011 4.0553 36 1 2.8788 -0.6848 5.6490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188184703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:41 Heat of formation + Delta-G solvation = 65.620492 kcal Electronic energy + Delta-G solvation = -18465.898841 eV Core-core repulsion = 15655.764456 eV Total energy + Delta-G solvation = -2810.134385 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78793 -37.17369 -34.87116 -33.98642 -32.11738 -30.41836 -29.35692 -27.95878 -26.88381 -23.45995 -23.12428 -22.08693 -20.83679 -20.31388 -17.28583 -17.14011 -16.78662 -16.34745 -15.82021 -15.16340 -14.43111 -14.11665 -14.02927 -14.00669 -13.30639 -13.02220 -12.81039 -12.54846 -12.30333 -11.97884 -11.86882 -11.72672 -11.50377 -11.37278 -10.98989 -10.63002 -10.28725 -10.02289 -9.82221 -9.61020 -9.59488 -9.34440 -8.76875 -8.59513 -8.08136 -7.03059 -6.09084 -4.08566 0.97609 1.55788 1.58412 2.67702 2.80208 2.95672 3.27199 3.35182 3.37228 3.94057 4.39776 4.44639 4.69532 4.92674 5.00459 5.11196 5.24647 5.30297 5.39861 5.47258 5.54241 5.61590 5.74633 5.76279 6.03543 6.12878 6.40580 6.44288 6.46434 6.51189 6.57742 6.73227 6.90979 6.98007 7.04035 7.14281 7.64791 7.91757 8.45041 8.96969 9.51324 11.03524 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.033129 B = 0.004339 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.977681 B = 6452.249944 C = 6814.035994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 H 0.098 0.902 4 C -0.001 4.001 5 C -0.525 4.525 6 H 0.081 0.919 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.265 1.265 13 S 0.018 5.982 14 C 0.270 3.730 15 N -0.499 5.499 16 C 0.062 3.938 17 C -0.071 4.071 18 C -0.130 4.130 19 C -0.115 4.115 20 C -0.108 4.108 21 C 0.045 3.955 22 N -0.485 5.485 23 C 0.079 3.921 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.025 0.975 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 2.897 16.269 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.175 4.175 3 H 0.116 0.884 4 C -0.040 4.040 5 C -0.564 4.564 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.189 1.189 13 S 0.251 5.749 14 C -0.102 4.102 15 N -0.224 5.224 16 C -0.059 4.059 17 C -0.092 4.092 18 C -0.151 4.151 19 C -0.135 4.135 20 C -0.129 4.129 21 C -0.066 4.066 22 N -0.177 5.177 23 C -0.063 4.063 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.800 1.975 15.489 18.435 hybrid contribution -0.644 0.292 -0.082 0.712 sum -10.444 2.267 15.408 18.751 Atomic orbital electron populations 1.22168 0.94016 1.01836 1.02943 1.23384 0.97432 1.02860 0.93852 0.88414 1.19584 0.98032 0.95627 0.90726 1.21148 0.89167 1.35795 1.10250 0.90070 1.24977 0.94699 0.95651 0.97663 1.69901 1.06529 1.44913 1.32148 0.86870 0.80355 0.80125 0.82572 1.20137 1.21242 1.18916 1.86068 1.67411 1.26708 0.94678 1.26350 0.98572 0.98429 0.86816 1.71089 1.19448 1.06869 1.24990 1.19178 1.01319 0.96664 0.88762 1.20249 0.98366 0.94195 0.96369 1.20820 1.01897 1.00352 0.92033 1.20773 0.99070 0.94441 0.99211 1.19862 1.02749 0.98482 0.91851 1.18949 1.01514 0.90911 0.95181 1.45124 1.46734 1.20772 1.05104 1.22001 0.97421 0.87805 0.99082 0.92790 0.91015 0.92051 0.95639 0.94663 0.92626 0.85534 0.85658 0.85669 0.86445 0.90662 0.88765 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.00 37.16 0.33 -2.29 16 2 C -0.05 -0.93 2.25 -26.73 -0.06 -0.99 16 3 H 0.10 2.12 8.13 -51.92 -0.42 1.70 16 4 C 0.00 -0.01 3.51 -27.88 -0.10 -0.11 16 5 C -0.53 -14.42 9.09 -34.44 -0.31 -14.73 16 6 H 0.08 2.42 7.84 -52.49 -0.41 2.01 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 9 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 13 S 0.02 0.35 20.30 -107.50 -2.18 -1.84 16 14 C 0.27 4.90 7.64 -88.45 -0.68 4.22 16 15 N -0.50 -9.44 8.63 -10.90 -0.09 -9.53 16 16 C 0.06 1.04 7.22 -84.68 -0.61 0.43 16 17 C -0.07 -0.98 10.10 -39.23 -0.40 -1.38 16 18 C -0.13 -1.44 10.01 -39.61 -0.40 -1.84 16 19 C -0.11 -1.20 10.03 -39.51 -0.40 -1.60 16 20 C -0.11 -1.30 10.04 -39.52 -0.40 -1.70 16 21 C 0.04 0.68 6.87 -83.84 -0.58 0.11 16 22 N -0.48 -7.50 3.23 -121.70 -0.39 -7.90 16 23 C 0.08 0.87 10.97 59.85 0.66 1.53 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.27 5.86 -51.93 -0.30 0.96 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 28 H 0.04 0.80 7.57 -51.93 -0.39 0.41 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.06 7.68 -51.92 -0.40 0.66 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -31.82 313.94 -9.71 -41.54 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.85 Total: -0.70 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -3.03 Total: -16.40 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.29 Total: -43.70 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.18 Total: -1.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.82 -9.71 -41.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188184703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.159 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds