Wall clock time and date at job start Mon Mar 30 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47509 * 2 1 4 4 C 1.53002 * 109.46994 * 240.00600 * 2 1 3 5 5 C 1.50703 * 109.47054 * 175.00085 * 4 2 1 6 6 H 1.07994 * 120.00488 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99673 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99893 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00163 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46744 * 90.00230 * 9 7 5 11 11 H 1.48500 * 109.46945 * 210.00104 * 9 7 5 12 12 H 1.48498 * 109.46912 * 330.00071 * 9 7 5 13 13 S 1.80995 * 109.47449 * 120.00557 * 2 1 3 14 14 C 1.76205 * 100.00000 * 294.99856 * 13 2 1 15 15 N 1.31047 * 125.07543 * 0.02562 * 14 13 2 16 16 C 1.35881 * 109.62306 * 179.97438 * 15 14 13 17 17 C 1.39715 * 133.37843 * 179.97438 * 16 15 14 18 18 C 1.37695 * 119.77608 * 180.02562 * 17 16 15 19 19 C 1.38698 * 120.49633 * 359.97438 * 18 17 16 20 20 C 1.37975 * 120.43624 * 0.03957 * 19 18 17 21 21 C 1.38652 * 119.84956 * 359.97438 * 20 19 18 22 22 N 1.36634 * 125.07934 * 179.97438 * 14 13 2 23 23 C 1.46498 * 126.38526 * 0.06068 * 22 14 13 24 24 H 1.08992 * 109.47180 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46773 * 299.99614 * 1 2 3 26 26 H 1.08994 * 109.47219 * 59.99224 * 1 2 3 27 27 H 1.09004 * 109.46807 * 294.99507 * 4 2 1 28 28 H 1.09000 * 109.47486 * 54.99748 * 4 2 1 29 29 H 0.96992 * 120.00089 * 180.02562 * 8 7 5 30 30 H 1.07996 * 120.11366 * 0.35870 * 17 16 15 31 31 H 1.08003 * 119.74676 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.78201 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.07641 * 180.02562 * 20 19 18 34 34 H 1.09002 * 109.47062 * 269.95798 * 23 22 14 35 35 H 1.09008 * 109.47171 * 29.95375 * 23 22 14 36 36 H 1.08997 * 109.47164 * 149.95252 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0855 -0.5397 7 6 4.2304 -1.1934 -2.3580 8 7 5.5411 -1.1011 -2.4132 9 14 3.3015 -2.1096 -3.6949 10 1 2.9399 -1.1652 -4.7824 11 1 4.1604 -3.1900 -4.2428 12 1 2.0660 -2.7017 -3.1222 13 16 2.1334 -0.8533 1.4777 14 6 1.5440 0.2421 2.7257 15 7 0.8654 1.3410 2.5039 16 6 0.5709 1.9420 3.6865 17 6 -0.1165 3.1105 4.0241 18 6 -0.2532 3.4654 5.3474 19 6 0.2860 2.6711 6.3485 20 6 0.9679 1.5143 6.0317 21 6 1.1154 1.1416 4.7044 22 7 1.7254 0.0721 4.0693 23 6 2.4339 -1.0343 4.7174 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.7516 -1.7714 -1.2057 28 1 1.6053 -0.2616 -2.1370 29 1 6.0254 -1.5077 -3.1486 30 1 -0.5438 3.7306 3.2499 31 1 -0.7843 4.3691 5.6078 32 1 0.1716 2.9603 7.3828 33 1 1.3850 0.8999 6.8159 34 1 1.7317 -1.8405 4.9301 35 1 3.2183 -1.4011 4.0553 36 1 2.8788 -0.6848 5.6490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188184703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:40 Heat of formation + Delta-G solvation = 48.138204 kcal Electronic energy + Delta-G solvation = -18466.656930 eV Core-core repulsion = 15655.764456 eV Total energy + Delta-G solvation = -2810.892474 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.91665 -38.15096 -36.58819 -35.20374 -34.12298 -31.37381 -30.54805 -29.69394 -27.87266 -24.98118 -24.59457 -23.17104 -22.20681 -21.69657 -18.91744 -18.50140 -18.17432 -17.47444 -16.96842 -16.60460 -16.35936 -15.32854 -15.01770 -14.96458 -14.87036 -14.28523 -14.23848 -14.05494 -13.65300 -13.49377 -13.14444 -12.89678 -12.82770 -12.54240 -12.41687 -12.36850 -11.76994 -11.65812 -11.45901 -11.33407 -11.16628 -10.90987 -10.74615 -9.96459 -9.10216 -8.41540 -8.25363 -6.31199 -0.08076 0.20252 0.56957 1.22545 1.38238 1.39644 1.50645 1.62892 1.82524 2.37260 2.91778 3.08836 3.39665 3.78260 3.99843 4.00680 4.15256 4.17926 4.28993 4.40089 4.48690 4.50279 4.56134 4.64542 4.84918 4.86742 4.95348 5.07952 5.17341 5.23911 5.32686 5.46234 5.58061 5.58799 5.61954 5.94872 5.96712 6.27393 6.71737 6.75514 7.32035 8.89728 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.033129 B = 0.004339 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.977681 B = 6452.249944 C = 6814.035994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.042 4.042 3 H 0.072 0.928 4 C 0.004 3.996 5 C -0.528 4.528 6 H 0.040 0.960 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.943 3.057 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.243 1.243 13 S 0.000 6.000 14 C 0.247 3.753 15 N -0.525 5.525 16 C 0.017 3.983 17 C -0.091 4.091 18 C -0.119 4.119 19 C -0.100 4.100 20 C -0.112 4.112 21 C 0.030 3.970 22 N -0.483 5.483 23 C 0.071 3.929 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.266 0.734 30 H 0.129 0.871 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 2.997 18.328 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 H 0.090 0.910 4 C -0.035 4.035 5 C -0.566 4.566 6 H 0.058 0.942 7 C -0.186 4.186 8 N -0.588 5.588 9 Si 0.766 3.234 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.166 1.166 13 S 0.232 5.768 14 C -0.126 4.126 15 N -0.250 5.250 16 C -0.104 4.104 17 C -0.112 4.112 18 C -0.139 4.139 19 C -0.120 4.120 20 C -0.133 4.133 21 C -0.080 4.080 22 N -0.175 5.175 23 C -0.070 4.070 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.178 0.822 32 H 0.185 0.815 33 H 0.165 0.835 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.025 2.080 17.578 21.399 hybrid contribution 0.038 0.446 -0.455 0.638 sum -11.987 2.526 17.123 21.054 Atomic orbital electron populations 1.22058 0.91539 1.02752 1.03374 1.23174 0.99331 1.01074 0.93555 0.90972 1.19486 0.94989 0.96413 0.92566 1.21357 0.91536 1.34691 1.09019 0.94213 1.25911 0.95497 0.96779 1.00433 1.70059 1.08555 1.46718 1.33433 0.85767 0.79562 0.78789 0.79269 1.19136 1.21101 1.16631 1.85827 1.68792 1.27192 0.94986 1.25898 1.00279 0.98714 0.87697 1.70939 1.19766 1.07388 1.26908 1.19669 1.03550 0.98487 0.88661 1.20537 0.98839 0.93717 0.98083 1.21291 1.00643 1.01205 0.90783 1.21350 0.96531 0.92982 1.01110 1.20325 1.02678 0.99390 0.90951 1.19388 1.01701 0.90593 0.96292 1.45323 1.46396 1.21569 1.04225 1.22302 0.97547 0.87438 0.99693 0.91530 0.91418 0.90731 0.94890 0.93651 0.92513 0.85351 0.82154 0.81470 0.83494 0.88805 0.89650 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.00 71.98 0.65 -4.14 16 2 C -0.04 -1.75 2.25 30.59 0.07 -1.68 16 3 H 0.07 3.32 8.13 -2.40 -0.02 3.30 16 4 C 0.00 0.20 3.51 29.85 0.10 0.31 16 5 C -0.53 -29.98 9.09 25.60 0.23 -29.75 16 6 H 0.04 2.52 7.84 -2.91 -0.02 2.50 16 7 C 0.01 0.64 5.47 84.66 0.46 1.10 16 8 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 9 Si 0.94 43.33 27.47 68.60 1.88 45.22 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.24 -10.25 6.54 99.48 0.65 -9.59 16 13 S 0.00 -0.02 20.30 -56.49 -1.15 -1.16 16 14 C 0.25 9.25 7.64 179.59 1.37 10.62 16 15 N -0.52 -20.54 8.63 -188.40 -1.63 -22.16 16 16 C 0.02 0.56 7.22 39.42 0.28 0.85 16 17 C -0.09 -2.44 10.10 22.50 0.23 -2.21 16 18 C -0.12 -2.22 10.01 22.25 0.22 -2.00 16 19 C -0.10 -1.65 10.03 22.32 0.22 -1.42 16 20 C -0.11 -2.33 10.04 22.31 0.22 -2.10 16 21 C 0.03 0.90 6.87 38.72 0.27 1.17 16 22 N -0.48 -14.87 3.23 -538.95 -1.74 -16.62 16 23 C 0.07 1.50 10.97 127.77 1.40 2.90 16 24 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.07 2.43 5.86 -2.39 -0.01 2.41 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.03 1.49 7.20 -2.38 -0.02 1.47 16 28 H 0.05 2.01 7.57 -2.39 -0.02 1.99 16 29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.95 7.68 -2.38 -0.02 1.93 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -72.74 313.94 4.42 -68.32 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.01 Total: 11.56 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 5.74 Total: -26.35 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.07 Total: -97.58 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.22 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.15 Total: -1.16 kcal Total: -72.74 4.42 -68.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188184703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.462 kcal (2) G-P(sol) polarization free energy of solvation -72.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds