Wall clock time and date at job start Mon Mar 30 2020 02:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47265 * 2 1 4 4 C 1.53000 * 109.46966 * 120.00881 * 2 1 3 5 5 C 1.50708 * 109.46688 * 294.99345 * 4 2 1 6 6 H 1.07992 * 120.00055 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99680 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99928 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99915 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46874 * 119.99845 * 9 7 5 12 12 H 1.48490 * 109.47420 * 239.99839 * 9 7 5 13 13 N 1.46502 * 109.46769 * 240.00318 * 2 1 3 14 14 N 1.28733 * 125.34105 * 300.00421 * 13 2 1 15 15 N 1.28987 * 108.94041 * 179.74889 * 14 13 2 16 16 C 1.34045 * 107.27226 * 0.39248 * 15 14 13 17 17 C 1.48460 * 126.67854 * 179.87139 * 16 15 14 18 18 C 1.39335 * 120.10194 * 359.69167 * 17 16 15 19 19 C 1.38007 * 119.93075 * 179.97438 * 18 17 16 20 20 C 1.38301 * 120.15099 * 359.97398 * 19 18 17 21 21 C 1.38516 * 120.20431 * 0.04432 * 20 19 18 22 22 F 1.35103 * 119.96536 * 179.97438 * 21 20 19 23 23 C 1.38282 * 120.06943 * 359.95656 * 21 20 19 24 24 N 1.28875 * 125.34160 * 119.99923 * 13 2 1 25 25 H 1.09000 * 109.46664 * 299.99507 * 1 2 3 26 26 H 1.09000 * 109.47328 * 59.99427 * 1 2 3 27 27 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47392 * 54.99698 * 4 2 1 29 29 H 1.09001 * 109.46684 * 175.00226 * 4 2 1 30 30 H 0.97003 * 119.99717 * 179.97438 * 8 7 5 31 31 H 1.07994 * 120.03040 * 359.69711 * 18 17 16 32 32 H 1.08001 * 119.92827 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.90090 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.07141 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0569 2.4766 6 1 1.0801 0.9740 2.3758 7 6 1.9933 -0.4020 3.7282 8 7 2.6772 -1.5187 3.8509 9 14 1.4998 0.5630 5.2496 10 1 0.7424 1.7740 4.8436 11 1 0.6459 -0.2860 6.1189 12 1 2.7181 0.9676 5.9959 13 7 2.0183 -0.6906 -1.1962 14 7 1.7713 -1.9166 -1.5012 15 7 2.3511 -2.1949 -2.6194 16 6 2.9941 -1.0891 -3.0202 17 6 3.8045 -0.9328 -4.2543 18 6 3.9603 -2.0063 -5.1287 19 6 4.7140 -1.8569 -6.2751 20 6 5.3146 -0.6437 -6.5583 21 6 5.1639 0.4273 -5.6930 22 9 5.7532 1.6101 -5.9742 23 6 4.4107 0.2873 -4.5418 24 7 2.7623 -0.1659 -2.1084 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7199 1.2950 29 1 3.1263 -0.7996 1.2054 30 1 2.9251 -1.8413 4.7315 31 1 3.4955 -2.9556 -4.9072 32 1 4.8351 -2.6892 -6.9526 33 1 5.9032 -0.5312 -7.4568 34 1 4.2936 1.1223 -3.8669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188257188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:07 Heat of formation + Delta-G solvation = 92.776240 kcal Electronic energy + Delta-G solvation = -19999.433546 eV Core-core repulsion = 16656.556298 eV Total energy + Delta-G solvation = -3342.877248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.03805 -43.89312 -39.10161 -36.25403 -33.34441 -33.23731 -31.91551 -30.81370 -29.90450 -27.37502 -25.12224 -24.48239 -23.41856 -22.43618 -21.65976 -20.22776 -17.91987 -17.07593 -16.74884 -16.35680 -16.29368 -15.90594 -15.72881 -14.96639 -14.69409 -13.97777 -13.75925 -13.49148 -13.20067 -13.04066 -12.55648 -12.33700 -12.19255 -11.88773 -11.67571 -11.42290 -11.19077 -11.06324 -10.92352 -10.64574 -10.60924 -10.54459 -10.34092 -9.69677 -9.48559 -9.06011 -8.67757 -8.60081 -6.23691 -4.30471 0.62054 0.99618 1.74029 2.41263 2.52808 3.19346 3.27694 3.29923 3.55272 3.73116 4.13121 4.27511 4.43497 4.72611 4.84342 4.98448 5.11671 5.14843 5.26176 5.42571 5.46768 5.68647 5.73534 5.83872 5.91584 6.02508 6.12900 6.13429 6.25423 6.31123 6.56588 6.63300 6.68596 7.26249 7.35580 7.69565 8.00032 8.73202 8.74558 9.35261 10.87447 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.003472 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.125320 B = 8062.986444 C = 8384.375078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.147 3.853 3 H 0.114 0.886 4 C 0.021 3.979 5 C -0.528 4.528 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.886 5.886 9 Si 0.900 3.100 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.105 5.105 14 N -0.048 5.048 15 N -0.289 5.289 16 C 0.178 3.822 17 C 0.035 3.965 18 C -0.093 4.093 19 C -0.092 4.092 20 C -0.145 4.145 21 C 0.096 3.904 22 F -0.138 7.138 23 C -0.122 4.122 24 N -0.300 5.300 25 H 0.100 0.900 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.025 0.975 30 H 0.265 0.735 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 1.878 -17.772 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.050 3.950 3 H 0.132 0.868 4 C -0.018 4.018 5 C -0.567 4.567 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.019 5.019 14 N -0.041 5.041 15 N -0.159 5.159 16 C -0.102 4.102 17 C 0.031 3.969 18 C -0.113 4.113 19 C -0.110 4.110 20 C -0.165 4.165 21 C 0.077 3.923 22 F -0.116 7.116 23 C -0.143 4.143 24 N -0.152 5.152 25 H 0.118 0.882 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.714 1.517 -17.113 17.265 hybrid contribution 0.289 0.942 0.634 1.171 sum 2.002 2.459 -16.479 16.781 Atomic orbital electron populations 1.22101 0.92008 1.03820 1.02778 1.22738 0.96080 0.97250 0.78973 0.86790 1.19546 0.97339 0.96898 0.88016 1.20941 1.36911 1.08941 0.89863 0.91663 1.25001 0.94662 0.95003 0.99343 1.69982 1.37456 1.20781 1.24082 0.86402 0.78412 0.79922 0.82507 1.19482 1.20761 1.20822 1.50951 1.27455 1.06622 1.16878 1.78899 1.17493 0.99389 1.08279 1.75961 1.11169 1.23678 1.05109 1.23346 1.02105 0.87788 0.96925 1.17004 0.96021 0.93829 0.90015 1.21299 0.97998 0.98831 0.93203 1.20936 0.96285 0.96932 0.96882 1.21263 1.02300 0.92663 1.00252 1.17462 0.97134 0.81991 0.95692 1.91514 1.82003 1.44637 1.93492 1.21165 0.97688 0.98577 0.96855 1.74823 1.13095 1.26857 1.00379 0.88160 0.93579 0.91144 0.94219 0.95644 0.92542 0.83914 0.84280 0.84484 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.19 37.16 0.34 -2.15 16 2 C 0.15 2.86 3.26 -67.93 -0.22 2.64 16 3 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 4 C 0.02 0.50 4.63 -27.88 -0.13 0.37 16 5 C -0.53 -13.39 8.41 -34.44 -0.29 -13.68 16 6 H 0.07 1.54 7.05 -52.49 -0.37 1.17 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.10 -2.08 3.73 -4.91 -0.02 -2.09 16 14 N -0.05 -0.99 12.92 60.35 0.78 -0.21 16 15 N -0.29 -5.48 12.23 32.15 0.39 -5.08 16 16 C 0.18 3.12 7.94 -156.31 -1.24 1.88 16 17 C 0.03 0.48 5.87 -104.90 -0.62 -0.13 16 18 C -0.09 -1.05 9.70 -39.26 -0.38 -1.43 16 19 C -0.09 -0.80 10.03 -39.64 -0.40 -1.20 16 20 C -0.15 -1.32 10.02 -39.46 -0.40 -1.72 16 21 C 0.10 1.10 7.29 -39.46 -0.29 0.81 16 22 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 23 C -0.12 -1.57 9.68 -39.19 -0.38 -1.95 16 24 N -0.30 -5.66 11.85 32.17 0.38 -5.28 16 25 H 0.10 1.65 6.95 -51.93 -0.36 1.29 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 31 H 0.14 1.54 7.89 -52.49 -0.41 1.12 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.15 1.90 7.88 -52.49 -0.41 1.49 16 LS Contribution 308.53 15.07 4.65 4.65 Total: -1.00 -29.18 308.53 -5.81 -34.98 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.65 Total: -1.04 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -4.09 Total: -14.99 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 2.27 Total: -37.17 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.18 -5.81 -34.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188257188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.758 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds