Wall clock time and date at job start Mon Mar 30 2020 02:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47265 * 2 1 4 4 C 1.53000 * 109.46966 * 120.00881 * 2 1 3 5 5 C 1.50708 * 109.46688 * 294.99345 * 4 2 1 6 6 H 1.07992 * 120.00055 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99680 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99928 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99915 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46874 * 119.99845 * 9 7 5 12 12 H 1.48490 * 109.47420 * 239.99839 * 9 7 5 13 13 N 1.46502 * 109.46769 * 240.00318 * 2 1 3 14 14 N 1.28733 * 125.34105 * 300.00421 * 13 2 1 15 15 N 1.28987 * 108.94041 * 179.74889 * 14 13 2 16 16 C 1.34045 * 107.27226 * 0.39248 * 15 14 13 17 17 C 1.48460 * 126.67854 * 179.87139 * 16 15 14 18 18 C 1.39335 * 120.10194 * 359.69167 * 17 16 15 19 19 C 1.38007 * 119.93075 * 179.97438 * 18 17 16 20 20 C 1.38301 * 120.15099 * 359.97398 * 19 18 17 21 21 C 1.38516 * 120.20431 * 0.04432 * 20 19 18 22 22 F 1.35103 * 119.96536 * 179.97438 * 21 20 19 23 23 C 1.38282 * 120.06943 * 359.95656 * 21 20 19 24 24 N 1.28875 * 125.34160 * 119.99923 * 13 2 1 25 25 H 1.09000 * 109.46664 * 299.99507 * 1 2 3 26 26 H 1.09000 * 109.47328 * 59.99427 * 1 2 3 27 27 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47392 * 54.99698 * 4 2 1 29 29 H 1.09001 * 109.46684 * 175.00226 * 4 2 1 30 30 H 0.97003 * 119.99717 * 179.97438 * 8 7 5 31 31 H 1.07994 * 120.03040 * 359.69711 * 18 17 16 32 32 H 1.08001 * 119.92827 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.90090 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.07141 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0569 2.4766 6 1 1.0801 0.9740 2.3758 7 6 1.9933 -0.4020 3.7282 8 7 2.6772 -1.5187 3.8509 9 14 1.4998 0.5630 5.2496 10 1 0.7424 1.7740 4.8436 11 1 0.6459 -0.2860 6.1189 12 1 2.7181 0.9676 5.9959 13 7 2.0183 -0.6906 -1.1962 14 7 1.7713 -1.9166 -1.5012 15 7 2.3511 -2.1949 -2.6194 16 6 2.9941 -1.0891 -3.0202 17 6 3.8045 -0.9328 -4.2543 18 6 3.9603 -2.0063 -5.1287 19 6 4.7140 -1.8569 -6.2751 20 6 5.3146 -0.6437 -6.5583 21 6 5.1639 0.4273 -5.6930 22 9 5.7532 1.6101 -5.9742 23 6 4.4107 0.2873 -4.5418 24 7 2.7623 -0.1659 -2.1084 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7199 1.2950 29 1 3.1263 -0.7996 1.2054 30 1 2.9251 -1.8413 4.7315 31 1 3.4955 -2.9556 -4.9072 32 1 4.8351 -2.6892 -6.9526 33 1 5.9032 -0.5312 -7.4568 34 1 4.2936 1.1223 -3.8669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188257188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:07 Heat of formation + Delta-G solvation = 76.231114 kcal Electronic energy + Delta-G solvation = -20000.150997 eV Core-core repulsion = 16656.556298 eV Total energy + Delta-G solvation = -3343.594699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.93211 -45.37065 -40.00238 -37.85240 -35.11639 -34.61625 -33.44539 -31.73496 -31.10178 -29.16314 -26.65151 -25.69480 -25.05755 -23.52753 -22.83563 -21.74263 -19.02531 -18.82979 -18.26531 -17.57898 -17.23300 -17.16287 -16.63593 -16.56660 -16.06778 -15.37566 -14.94700 -14.67838 -14.58576 -14.28259 -14.10168 -13.65983 -13.48715 -13.30796 -12.92262 -12.86809 -12.75126 -12.51329 -12.35107 -12.30531 -12.09806 -12.01231 -11.92440 -11.43101 -11.30775 -10.65612 -9.98068 -9.68446 -8.27208 -6.40604 -0.37816 0.13735 0.23205 0.92621 1.28856 1.43698 1.45179 1.57407 2.39126 2.55077 2.62222 3.03781 3.09111 3.38622 3.73282 3.90158 3.90349 3.96089 4.09388 4.15600 4.31555 4.35081 4.55756 4.66549 4.75674 4.82061 5.00265 5.05552 5.07865 5.15926 5.27152 5.28604 5.35024 5.41163 5.69610 5.80439 5.99134 6.73098 7.25408 7.30371 8.85815 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.003472 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.125320 B = 8062.986444 C = 8384.375078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.154 3.846 3 H 0.127 0.873 4 C 0.032 3.968 5 C -0.533 4.533 6 H 0.086 0.914 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.973 3.027 10 H -0.251 1.251 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.112 5.112 14 N -0.072 5.072 15 N -0.297 5.297 16 C 0.187 3.813 17 C 0.002 3.998 18 C -0.092 4.092 19 C -0.076 4.076 20 C -0.125 4.125 21 C 0.085 3.915 22 F -0.143 7.143 23 C -0.131 4.131 24 N -0.315 5.315 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.010 0.990 29 H -0.014 1.014 30 H 0.265 0.735 31 H 0.146 0.854 32 H 0.182 0.818 33 H 0.172 0.828 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 2.724 -19.737 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.056 3.944 3 H 0.145 0.855 4 C -0.007 4.007 5 C -0.571 4.571 6 H 0.104 0.896 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.797 3.203 10 H -0.174 1.174 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.027 5.027 14 N -0.064 5.064 15 N -0.167 5.167 16 C -0.092 4.092 17 C -0.001 4.001 18 C -0.112 4.112 19 C -0.094 4.094 20 C -0.144 4.144 21 C 0.066 3.934 22 F -0.121 7.121 23 C -0.152 4.152 24 N -0.166 5.166 25 H 0.126 0.874 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.029 0.971 29 H 0.005 0.995 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.199 0.801 33 H 0.190 0.810 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.656 2.377 -19.095 19.314 hybrid contribution 0.413 0.632 1.065 1.306 sum 2.068 3.010 -18.030 18.396 Atomic orbital electron populations 1.22049 0.89674 1.03751 1.04326 1.22559 0.97800 0.96797 0.77238 0.85510 1.19275 0.94697 0.96094 0.90640 1.21405 1.36153 1.09351 0.90173 0.89593 1.26000 0.94630 0.95888 1.02997 1.70135 1.39329 1.22930 1.24816 0.85276 0.77958 0.78937 0.78159 1.17388 1.20679 1.21022 1.50891 1.28005 1.06556 1.17204 1.78861 1.18502 0.99913 1.09126 1.75916 1.11678 1.24213 1.04865 1.24041 1.01049 0.86749 0.97393 1.17121 0.97741 0.95453 0.89822 1.21496 0.98105 0.98049 0.93566 1.21370 0.94122 0.97943 0.95951 1.21698 1.00888 0.91538 1.00277 1.17610 0.97324 0.82644 0.95792 1.91505 1.82056 1.45104 1.93454 1.21095 0.98472 0.97988 0.97654 1.74816 1.13506 1.27440 1.00796 0.87436 0.91030 0.92044 0.97131 0.99540 0.92609 0.83630 0.80090 0.81027 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 9.19 71.98 0.66 -3.94 16 2 C 0.15 6.07 3.26 44.99 0.15 6.21 16 3 H 0.13 4.64 8.14 -2.39 -0.02 4.62 16 4 C 0.03 1.59 4.63 29.85 0.14 1.73 16 5 C -0.53 -27.21 8.41 25.60 0.22 -27.00 16 6 H 0.09 3.95 7.05 -2.91 -0.02 3.93 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 9 Si 0.97 41.33 29.54 68.60 2.03 43.35 16 10 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 13 N -0.11 -4.57 3.73 -169.44 -0.63 -5.20 16 14 N -0.07 -3.03 12.92 37.02 0.48 -2.55 16 15 N -0.30 -11.50 12.23 -52.18 -0.64 -12.14 16 16 C 0.19 6.68 7.94 137.38 1.09 7.77 16 17 C 0.00 0.06 5.87 -20.05 -0.12 -0.06 16 18 C -0.09 -1.90 9.70 22.48 0.22 -1.68 16 19 C -0.08 -1.01 10.03 22.23 0.22 -0.79 16 20 C -0.12 -1.78 10.02 22.35 0.22 -1.55 16 21 C 0.09 1.79 7.29 22.35 0.16 1.95 16 22 F -0.14 -3.17 17.27 44.97 0.78 -2.39 16 23 C -0.13 -3.35 9.68 22.52 0.22 -3.13 16 24 N -0.31 -12.16 11.85 -52.13 -0.62 -12.78 16 25 H 0.11 3.37 6.95 -2.39 -0.02 3.35 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.15 2.90 7.89 -2.91 -0.02 2.88 16 32 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.13 3.61 7.88 -2.91 -0.02 3.59 16 Total: -1.00 -65.76 308.53 6.44 -59.32 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.12 Total: 6.80 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 3.64 Total: -19.83 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -1.12 Total: -87.25 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -65.76 6.44 -59.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188257188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.548 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds