Wall clock time and date at job start Mon Mar 30 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 H 1.08007 * 119.99917 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99976 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00138 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99638 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47024 * 60.00318 * 9 7 5 11 11 H 1.48503 * 109.46994 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47732 * 300.00016 * 9 7 5 13 13 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 14 14 N 1.28730 * 125.34381 * 60.02861 * 13 2 1 15 15 N 1.28982 * 108.94343 * 179.97438 * 14 13 2 16 16 C 1.34043 * 107.27024 * 359.97438 * 15 14 13 17 17 C 1.48469 * 126.67232 * 180.02562 * 16 15 14 18 18 C 1.39320 * 120.10671 * 359.97438 * 17 16 15 19 19 C 1.38014 * 119.93515 * 179.97438 * 18 17 16 20 20 C 1.38304 * 120.14473 * 359.97438 * 19 18 17 21 21 C 1.38516 * 120.20567 * 359.97438 * 20 19 18 22 22 F 1.35105 * 119.96398 * 179.97438 * 21 20 19 23 23 C 1.38272 * 120.07150 * 359.78855 * 21 20 19 24 24 N 1.28876 * 125.34101 * 239.72168 * 13 2 1 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 29 29 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 30 30 H 0.97005 * 119.99650 * 180.02562 * 8 7 5 31 31 H 1.08002 * 120.03357 * 359.95901 * 18 17 16 32 32 H 1.08001 * 119.92953 * 180.02562 * 19 18 17 33 33 H 1.07995 * 119.89574 * 180.02562 * 20 19 18 34 34 H 1.07996 * 120.07856 * 180.25284 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9744 -2.3757 7 6 1.9934 -0.4015 -3.7283 8 7 2.6774 -1.5180 -3.8511 9 14 1.4986 0.5630 -5.2496 10 1 2.0897 1.9239 -5.1869 11 1 1.9948 -0.1362 -6.4621 12 1 0.0186 0.6686 -5.3093 13 7 2.0184 -0.6906 1.1961 14 7 1.7720 -1.9169 1.5007 15 7 2.3564 -2.1969 2.6159 16 6 2.9952 -1.0897 3.0194 17 6 3.8068 -0.9339 4.2528 18 6 3.9628 -2.0074 5.1269 19 6 4.7185 -1.8588 6.2722 20 6 5.3217 -0.6466 6.5539 21 6 5.1714 0.4244 5.6884 22 9 5.7623 1.6066 5.9686 23 6 4.4203 0.2838 4.5360 24 7 2.7666 -0.1675 2.1057 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1264 -0.7993 -1.2057 29 1 1.6055 -1.7197 -1.2953 30 1 2.9253 -1.8404 -4.7318 31 1 3.4927 -2.9550 4.9087 32 1 4.8397 -2.6912 6.9496 33 1 5.9124 -0.5349 7.4510 34 1 4.3063 1.1175 3.8591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188257209.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:09 Heat of formation + Delta-G solvation = 92.870184 kcal Electronic energy + Delta-G solvation = -19999.666798 eV Core-core repulsion = 16656.793623 eV Total energy + Delta-G solvation = -3342.873175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.03721 -43.89408 -39.10102 -36.25352 -33.34394 -33.23670 -31.91519 -30.81336 -29.90440 -27.37345 -25.12106 -24.48198 -23.41616 -22.43484 -21.65972 -20.22693 -17.91929 -17.07507 -16.74627 -16.35614 -16.29319 -15.90116 -15.72797 -14.96551 -14.69917 -13.97783 -13.76045 -13.49089 -13.19849 -13.04351 -12.55601 -12.32113 -12.18965 -11.88678 -11.67476 -11.42278 -11.18606 -11.07436 -10.91581 -10.63731 -10.61814 -10.54555 -10.33689 -9.69353 -9.51573 -9.05953 -8.67706 -8.59179 -6.23157 -4.30207 0.62104 0.99659 1.74062 2.41387 2.52830 3.21384 3.27275 3.28202 3.55274 3.73194 4.13145 4.27713 4.43566 4.72661 4.84399 4.98476 5.11843 5.14978 5.26222 5.42615 5.46839 5.68706 5.73581 5.83901 5.91620 6.02582 6.12876 6.13481 6.25467 6.31175 6.56697 6.63339 6.68651 7.26272 7.35552 7.69470 8.00337 8.72975 8.74625 9.35438 10.87893 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.003473 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.664125 B = 8060.765359 C = 8382.519969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.147 3.853 3 H 0.114 0.886 4 C 0.021 3.979 5 C -0.530 4.530 6 H 0.064 0.936 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.901 3.099 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.105 5.105 14 N -0.048 5.048 15 N -0.289 5.289 16 C 0.178 3.822 17 C 0.035 3.965 18 C -0.093 4.093 19 C -0.092 4.092 20 C -0.145 4.145 21 C 0.096 3.904 22 F -0.138 7.138 23 C -0.122 4.122 24 N -0.300 5.300 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.025 0.975 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 1.857 17.751 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.050 3.950 3 H 0.132 0.868 4 C -0.017 4.017 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.019 5.019 14 N -0.041 5.041 15 N -0.159 5.159 16 C -0.102 4.102 17 C 0.031 3.969 18 C -0.113 4.113 19 C -0.110 4.110 20 C -0.165 4.165 21 C 0.077 3.923 22 F -0.116 7.116 23 C -0.143 4.143 24 N -0.151 5.151 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.731 1.487 17.084 17.235 hybrid contribution 0.276 0.962 -0.626 1.180 sum 2.007 2.448 16.458 16.760 Atomic orbital electron populations 1.22100 0.91999 1.03829 1.02770 1.22737 0.96082 0.97249 0.78980 0.86792 1.19534 0.97324 0.96883 0.87988 1.20865 1.37090 1.08969 0.89897 0.91773 1.24991 0.94644 0.94994 0.99314 1.69957 1.37313 1.20743 1.24300 0.86516 0.79034 0.79944 0.81734 1.20008 1.21104 1.19919 1.50948 1.27283 1.06691 1.16987 1.78896 1.17447 0.99313 1.08400 1.75959 1.11209 1.23588 1.05155 1.23347 1.02177 0.87784 0.96862 1.17005 0.95947 0.93850 0.90067 1.21299 0.98007 0.98802 0.93222 1.20939 0.96292 0.96935 0.96870 1.21263 1.02275 0.92664 1.00275 1.17459 0.97139 0.82013 0.95668 1.91515 1.81939 1.44683 1.93511 1.21167 0.97660 0.98614 0.96843 1.74819 1.12999 1.26964 1.00364 0.91142 0.93571 0.88170 0.95659 0.94233 0.92422 0.83913 0.84279 0.84485 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.19 37.16 0.34 -2.15 16 2 C 0.15 2.86 3.26 -67.93 -0.22 2.64 16 3 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 4 C 0.02 0.51 4.63 -27.88 -0.13 0.38 16 5 C -0.53 -13.45 8.41 -34.44 -0.29 -13.74 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.10 -2.08 3.73 -4.91 -0.02 -2.10 16 14 N -0.05 -0.99 12.92 60.35 0.78 -0.21 16 15 N -0.29 -5.48 12.23 32.16 0.39 -5.09 16 16 C 0.18 3.12 7.94 -156.31 -1.24 1.88 16 17 C 0.03 0.48 5.88 -104.90 -0.62 -0.13 16 18 C -0.09 -1.05 9.70 -39.26 -0.38 -1.43 16 19 C -0.09 -0.80 10.03 -39.64 -0.40 -1.20 16 20 C -0.15 -1.32 10.02 -39.45 -0.40 -1.72 16 21 C 0.10 1.10 7.29 -39.47 -0.29 0.81 16 22 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 23 C -0.12 -1.57 9.68 -39.19 -0.38 -1.95 16 24 N -0.30 -5.66 11.85 32.17 0.38 -5.28 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.10 1.64 6.95 -51.93 -0.36 1.28 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.14 1.54 7.89 -52.49 -0.41 1.12 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.15 1.90 7.88 -52.49 -0.41 1.49 16 LS Contribution 308.53 15.07 4.65 4.65 Total: -1.00 -29.14 308.53 -5.81 -34.95 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.65 Total: -0.97 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -4.09 Total: -15.00 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 2.27 Total: -37.20 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.14 -5.81 -34.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188257209.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.822 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds