Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31011 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 O 1.42899 * 109.47130 * 135.00027 * 3 2 1 5 5 C 1.35694 * 117.00093 * 179.97438 * 4 3 2 6 6 C 1.39021 * 119.90499 * 0.27444 * 5 4 3 7 7 C 1.37679 * 120.09068 * 180.28089 * 6 5 4 8 8 C 1.39794 * 119.90398 * 359.43972 * 7 6 5 9 9 C 1.47473 * 120.08904 * 180.29757 * 8 7 6 10 10 O 1.21498 * 120.00032 * 0.02562 * 9 8 7 11 11 O 1.34752 * 119.99783 * 180.02562 * 9 8 7 12 12 C 1.45204 * 116.99850 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46771 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.46813 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99903 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99980 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99902 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47005 * 89.99988 * 18 16 14 20 20 H 1.48498 * 109.47178 * 210.00144 * 18 16 14 21 21 H 1.48501 * 109.47280 * 330.00552 * 18 16 14 22 22 C 1.39784 * 119.81736 * 0.28441 * 8 7 6 23 23 C 1.37681 * 119.90771 * 359.97438 * 22 8 7 24 24 H 1.07997 * 119.99957 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99643 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99957 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46919 * 14.99616 * 3 2 1 28 28 H 1.09000 * 109.46708 * 254.99529 * 3 2 1 29 29 H 1.07998 * 119.95278 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.04953 * 179.72504 * 7 6 5 31 31 H 1.09000 * 109.47171 * 300.00282 * 12 11 9 32 32 H 1.09001 * 109.46834 * 60.00652 * 12 11 9 33 33 H 1.09000 * 109.47020 * 299.99783 * 13 12 11 34 34 H 1.08993 * 109.47547 * 60.00129 * 13 12 11 35 35 H 0.97003 * 120.00013 * 180.02562 * 17 16 14 36 36 H 1.08005 * 120.04680 * 180.02562 * 22 8 7 37 37 H 1.08000 * 119.95490 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2413 0.9527 5 6 3.9086 2.3433 1.0780 6 6 3.6519 3.4673 0.3012 7 6 4.4462 4.5854 0.4211 8 6 5.5049 4.5935 1.3340 9 6 6.3543 5.7913 1.4705 10 8 6.1341 6.7730 0.7893 11 8 7.3746 5.7970 2.3506 12 6 8.1683 7.0102 2.4320 13 6 9.2715 6.8288 3.4764 14 6 10.0948 8.0882 3.5613 15 1 9.8554 8.9332 2.9328 16 6 11.1538 8.1615 4.4413 17 7 11.4450 7.1326 5.2069 18 14 12.1747 9.7223 4.5460 19 1 11.5880 10.6302 5.5642 20 1 13.5666 9.3783 4.9328 21 1 12.1812 10.3992 3.2243 22 6 5.7560 3.4633 2.1172 23 6 4.9601 2.3474 1.9873 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3855 2.1161 0.2659 28 1 2.4756 1.4867 -0.9927 29 1 2.8312 3.4616 -0.4009 30 1 4.2489 5.4566 -0.1859 31 1 8.6181 7.2159 1.4607 32 1 7.5284 7.8443 2.7201 33 1 8.8219 6.6229 4.4478 34 1 9.9113 5.9948 3.1881 35 1 12.1897 7.1844 5.8262 36 1 6.5727 3.4657 2.8240 37 1 5.1531 1.4739 2.5924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192666617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -88.327829 kcal Electronic energy + Delta-G solvation = -19566.523998 eV Core-core repulsion = 16274.668291 eV Total energy + Delta-G solvation = -3291.855707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61194 -39.70512 -37.62743 -35.97694 -34.53259 -33.33485 -31.34147 -30.83454 -29.89819 -27.14362 -25.26237 -23.59862 -22.83979 -21.10940 -20.51099 -20.37881 -18.56430 -17.72338 -16.63636 -16.51079 -16.22293 -15.87295 -15.81179 -15.02279 -14.64336 -14.51544 -13.83061 -13.70062 -13.55050 -13.38520 -12.86965 -12.72757 -12.37372 -12.32825 -11.65630 -11.51477 -11.19516 -11.11566 -10.98348 -10.74067 -10.68627 -10.25385 -10.02577 -9.62787 -9.61492 -9.29096 -9.27413 -8.50061 -8.43038 -6.09528 -4.13681 0.72639 1.15521 1.54700 2.74656 2.92251 3.19352 3.29417 3.35626 3.40487 3.72956 4.28600 4.40159 4.49690 4.53425 4.64451 4.77316 4.91269 5.03607 5.11842 5.24790 5.27101 5.32277 5.42289 5.80418 5.96670 5.99095 6.01694 6.07964 6.11712 6.15223 6.26431 6.45157 6.65497 6.98155 7.04211 7.57107 7.63729 7.87866 8.20301 8.28103 8.91793 9.50577 11.01974 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.055989 B = 0.002499 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.978358 B =11202.118903 C =11646.064739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.157 4.157 3 C 0.084 3.916 4 O -0.307 6.307 5 C 0.157 3.843 6 C -0.225 4.225 7 C -0.016 4.016 8 C -0.158 4.158 9 C 0.504 3.496 10 O -0.520 6.520 11 O -0.353 6.353 12 C 0.076 3.924 13 C 0.024 3.976 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.019 4.019 23 C -0.165 4.165 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.151 0.849 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.152 -14.176 -9.996 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.009 3.991 4 O -0.221 6.221 5 C 0.111 3.889 6 C -0.244 4.244 7 C -0.034 4.034 8 C -0.159 4.159 9 C 0.349 3.651 10 O -0.411 6.411 11 O -0.269 6.269 12 C 0.004 3.996 13 C -0.013 4.013 14 C -0.564 4.564 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.037 4.037 23 C -0.183 4.183 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.139 0.861 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.169 0.831 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.039 -14.112 -9.935 26.447 hybrid contribution 0.503 1.085 -0.127 1.202 sum -19.536 -13.028 -10.062 25.547 Atomic orbital electron populations 1.23912 0.95418 1.02682 0.98707 1.22668 0.95667 0.97752 1.01409 1.21902 0.87849 0.97060 0.92288 1.86057 1.41928 1.35720 1.58360 1.19311 0.90270 0.85514 0.93761 1.21136 1.04293 0.94107 1.04848 1.21050 0.90853 0.97495 0.94021 1.19205 0.99474 0.94113 1.03114 1.20991 0.79580 0.86944 0.77587 1.90787 1.70402 1.35547 1.44367 1.86569 1.40410 1.44095 1.55840 1.23662 0.92120 0.82089 1.01777 1.19174 0.90926 0.98279 0.92894 1.20984 1.13695 0.99317 1.22445 0.92244 1.24984 0.97222 0.96689 0.95292 1.69970 1.29163 1.29920 1.23768 0.86468 0.79339 0.82966 0.78512 1.20494 1.21059 1.19730 1.21430 0.96825 0.90185 0.95281 1.20437 0.96097 1.00455 1.01346 0.88164 0.87353 0.86129 0.91138 0.90675 0.84795 0.84229 0.92246 0.92246 0.95312 0.95300 0.92719 0.83138 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 14.31 29.01 0.42 -0.40 16 2 C -0.16 -0.95 9.89 -36.03 -0.36 -1.30 16 3 C 0.08 0.58 5.15 36.01 0.19 0.76 16 4 O -0.31 -3.05 10.11 -18.79 -0.19 -3.24 16 5 C 0.16 1.71 6.70 -39.00 -0.26 1.45 16 6 C -0.23 -2.31 9.01 -39.50 -0.36 -2.67 16 7 C -0.02 -0.20 9.59 -39.20 -0.38 -0.57 16 8 C -0.16 -2.33 5.87 -104.98 -0.62 -2.95 16 9 C 0.50 9.38 7.89 34.49 0.27 9.65 16 10 O -0.52 -10.74 16.13 -19.26 -0.31 -11.06 16 11 O -0.35 -7.22 9.46 -40.63 -0.38 -7.61 16 12 C 0.08 1.72 5.41 37.16 0.20 1.92 16 13 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 14 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 15 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 18 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 C -0.02 -0.25 9.61 -39.21 -0.38 -0.62 16 23 C -0.16 -1.86 9.97 -39.50 -0.39 -2.25 16 24 H 0.10 0.40 7.90 -52.49 -0.41 -0.02 16 25 H 0.11 0.38 8.06 -52.49 -0.42 -0.04 16 26 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 27 H 0.07 0.42 7.36 -51.93 -0.38 0.03 16 28 H 0.08 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.13 1.00 6.28 -52.49 -0.33 0.67 16 30 H 0.14 1.66 7.64 -52.49 -0.40 1.26 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.15 1.91 7.60 -52.48 -0.40 1.51 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -32.03 330.38 -7.24 -39.27 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.82 Total: -3.08 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.22 Total: -10.07 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.89 Total: -21.91 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.03 -7.24 -39.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192666617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.058 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds