Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31011 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 O 1.42899 * 109.47130 * 135.00027 * 3 2 1 5 5 C 1.35694 * 117.00093 * 179.97438 * 4 3 2 6 6 C 1.39021 * 119.90499 * 0.27444 * 5 4 3 7 7 C 1.37679 * 120.09068 * 180.28089 * 6 5 4 8 8 C 1.39794 * 119.90398 * 359.43972 * 7 6 5 9 9 C 1.47473 * 120.08904 * 180.29757 * 8 7 6 10 10 O 1.21498 * 120.00032 * 0.02562 * 9 8 7 11 11 O 1.34752 * 119.99783 * 180.02562 * 9 8 7 12 12 C 1.45204 * 116.99850 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46771 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.46813 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99903 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99980 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99902 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47005 * 89.99988 * 18 16 14 20 20 H 1.48498 * 109.47178 * 210.00144 * 18 16 14 21 21 H 1.48501 * 109.47280 * 330.00552 * 18 16 14 22 22 C 1.39784 * 119.81736 * 0.28441 * 8 7 6 23 23 C 1.37681 * 119.90771 * 359.97438 * 22 8 7 24 24 H 1.07997 * 119.99957 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99643 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99957 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46919 * 14.99616 * 3 2 1 28 28 H 1.09000 * 109.46708 * 254.99529 * 3 2 1 29 29 H 1.07998 * 119.95278 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.04953 * 179.72504 * 7 6 5 31 31 H 1.09000 * 109.47171 * 300.00282 * 12 11 9 32 32 H 1.09001 * 109.46834 * 60.00652 * 12 11 9 33 33 H 1.09000 * 109.47020 * 299.99783 * 13 12 11 34 34 H 1.08993 * 109.47547 * 60.00129 * 13 12 11 35 35 H 0.97003 * 120.00013 * 180.02562 * 17 16 14 36 36 H 1.08005 * 120.04680 * 180.02562 * 22 8 7 37 37 H 1.08000 * 119.95490 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2413 0.9527 5 6 3.9086 2.3433 1.0780 6 6 3.6519 3.4673 0.3012 7 6 4.4462 4.5854 0.4211 8 6 5.5049 4.5935 1.3340 9 6 6.3543 5.7913 1.4705 10 8 6.1341 6.7730 0.7893 11 8 7.3746 5.7970 2.3506 12 6 8.1683 7.0102 2.4320 13 6 9.2715 6.8288 3.4764 14 6 10.0948 8.0882 3.5613 15 1 9.8554 8.9332 2.9328 16 6 11.1538 8.1615 4.4413 17 7 11.4450 7.1326 5.2069 18 14 12.1747 9.7223 4.5460 19 1 11.5880 10.6302 5.5642 20 1 13.5666 9.3783 4.9328 21 1 12.1812 10.3992 3.2243 22 6 5.7560 3.4633 2.1172 23 6 4.9601 2.3474 1.9873 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3855 2.1161 0.2659 28 1 2.4756 1.4867 -0.9927 29 1 2.8312 3.4616 -0.4009 30 1 4.2489 5.4566 -0.1859 31 1 8.6181 7.2159 1.4607 32 1 7.5284 7.8443 2.7201 33 1 8.8219 6.6229 4.4478 34 1 9.9113 5.9948 3.1881 35 1 12.1897 7.1844 5.8262 36 1 6.5727 3.4657 2.8240 37 1 5.1531 1.4739 2.5924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192666617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -105.659332 kcal Electronic energy + Delta-G solvation = -19567.275548 eV Core-core repulsion = 16274.668291 eV Total energy + Delta-G solvation = -3292.607258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.70417 -40.93975 -38.60131 -37.56492 -35.45284 -35.01315 -32.55599 -32.19305 -31.30249 -27.77417 -27.14093 -24.92362 -23.71249 -22.95562 -21.88067 -20.87654 -19.40621 -19.12218 -18.31796 -17.76836 -17.52304 -17.22972 -16.81278 -16.53237 -15.82958 -15.43582 -15.14563 -14.87470 -14.59597 -14.40073 -14.31270 -13.85890 -13.61336 -13.43800 -13.13929 -13.02499 -12.61948 -12.58422 -12.24507 -12.18395 -11.92094 -11.79999 -11.54381 -11.49068 -11.37608 -10.61412 -10.44131 -10.18880 -9.42461 -8.27128 -6.40314 -0.34788 0.24624 1.12336 1.40836 1.43044 1.46230 1.53897 1.72300 2.26144 2.40339 2.67765 3.07153 3.61909 3.67147 3.77301 3.94629 4.08521 4.09498 4.21618 4.24686 4.26869 4.34891 4.50441 4.56439 4.67647 4.91597 4.95217 5.00940 5.11213 5.24515 5.30711 5.46260 5.49839 5.51692 5.63522 5.69659 5.73454 6.06270 6.26446 6.68611 6.73893 7.29229 8.85465 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.055989 B = 0.002499 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.978358 B =11202.118903 C =11646.064739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.178 4.178 3 C 0.075 3.925 4 O -0.315 6.315 5 C 0.167 3.833 6 C -0.214 4.214 7 C -0.015 4.015 8 C -0.185 4.185 9 C 0.503 3.497 10 O -0.546 6.546 11 O -0.360 6.360 12 C 0.091 3.909 13 C 0.031 3.969 14 C -0.551 4.551 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.974 3.026 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.022 4.022 23 C -0.167 4.167 24 H 0.110 0.890 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.144 0.856 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.268 0.732 36 H 0.145 0.855 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.706 -14.525 -10.916 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C 0.001 3.999 4 O -0.228 6.228 5 C 0.120 3.880 6 C -0.232 4.232 7 C -0.033 4.033 8 C -0.187 4.187 9 C 0.350 3.650 10 O -0.439 6.439 11 O -0.276 6.276 12 C 0.018 3.982 13 C -0.006 4.006 14 C -0.589 4.589 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.565 5.565 18 Si 0.798 3.202 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.041 4.041 23 C -0.185 4.185 24 H 0.128 0.872 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.185 0.815 30 H 0.161 0.839 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.163 0.837 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.619 -14.482 -10.866 28.199 hybrid contribution 0.804 1.006 0.118 1.293 sum -20.814 -13.476 -10.748 27.025 Atomic orbital electron populations 1.24135 0.95070 1.03769 0.96611 1.22683 0.96142 0.97396 1.03335 1.22205 0.87357 0.98119 0.92238 1.86070 1.42399 1.35153 1.59146 1.19420 0.89771 0.85892 0.92887 1.21404 1.04325 0.92762 1.04743 1.21155 0.90312 0.98492 0.93357 1.19110 1.00577 0.93185 1.05781 1.21682 0.78913 0.87977 0.76391 1.90758 1.71002 1.36824 1.45295 1.86556 1.41219 1.42871 1.56981 1.23199 0.91560 0.83012 1.00466 1.18982 0.91551 0.97170 0.92878 1.21374 1.14481 1.00061 1.22962 0.91704 1.25972 0.98401 1.00348 0.94623 1.70092 1.29863 1.32164 1.24357 0.85308 0.77496 0.78447 0.78956 1.19528 1.20325 1.18779 1.21392 0.97191 0.90371 0.95107 1.20591 0.95928 1.00287 1.01690 0.87209 0.86194 0.86335 0.89761 0.89395 0.81456 0.83868 0.92186 0.92158 0.97398 0.97386 0.92314 0.83700 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 14.31 67.77 0.97 -0.11 16 2 C -0.18 -1.72 9.89 25.64 0.25 -1.47 16 3 C 0.07 0.81 5.15 71.24 0.37 1.17 16 4 O -0.31 -5.42 10.11 -90.13 -0.91 -6.33 16 5 C 0.17 3.24 6.70 22.64 0.15 3.39 16 6 C -0.21 -3.83 9.01 22.33 0.20 -3.63 16 7 C -0.01 -0.35 9.59 22.51 0.22 -0.14 16 8 C -0.19 -5.49 5.87 -20.09 -0.12 -5.61 16 9 C 0.50 19.19 7.89 70.26 0.55 19.74 16 10 O -0.55 -23.00 16.13 19.84 0.32 -22.68 16 11 O -0.36 -15.27 9.46 -56.62 -0.54 -15.81 16 12 C 0.09 4.24 5.41 71.98 0.39 4.63 16 13 C 0.03 1.72 5.35 29.85 0.16 1.88 16 14 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 15 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 16 C 0.01 0.32 5.46 84.66 0.46 0.78 16 17 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 18 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 C -0.02 -0.58 9.61 22.51 0.22 -0.36 16 23 C -0.17 -3.53 9.97 22.32 0.22 -3.31 16 24 H 0.11 0.53 7.90 -2.91 -0.02 0.51 16 25 H 0.12 0.52 8.06 -2.91 -0.02 0.50 16 26 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 27 H 0.08 0.69 7.36 -2.39 -0.02 0.67 16 28 H 0.09 0.73 7.66 -2.39 -0.02 0.71 16 29 H 0.17 1.82 6.28 -2.91 -0.02 1.80 16 30 H 0.14 3.26 7.64 -2.91 -0.02 3.24 16 31 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.15 3.82 7.60 -2.91 -0.02 3.80 16 37 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -69.33 330.38 6.52 -62.81 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.06 Total: 5.98 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.28 Total: -14.51 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.28 Total: -55.53 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.13 Total: -44.82 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.33 6.52 -62.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192666617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.848 kcal (2) G-P(sol) polarization free energy of solvation -69.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds