Wall clock time and date at job start Mon Mar 30 2020 02:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99673 * 2 1 4 4 O 1.42908 * 109.46785 * 134.99579 * 3 2 1 5 5 C 1.35638 * 116.99244 * 179.97438 * 4 3 2 6 6 C 1.38702 * 120.15986 * 0.02562 * 5 4 3 7 7 C 1.38060 * 120.08999 * 180.02562 * 6 5 4 8 8 C 1.38557 * 120.40270 * 359.95400 * 7 6 5 9 9 C 1.37765 * 120.31024 * 359.97438 * 8 7 6 10 10 C 1.39768 * 119.90177 * 0.02655 * 9 8 7 11 11 C 1.47397 * 120.19768 * 179.97438 * 10 9 8 12 12 O 1.21508 * 119.99935 * 179.97438 * 11 10 9 13 13 O 1.34749 * 120.00301 * 359.97438 * 11 10 9 14 14 C 1.45201 * 117.00645 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47500 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47163 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99827 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00098 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00121 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00282 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47114 * 59.99586 * 20 18 16 22 22 H 1.48500 * 109.47481 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47009 * 300.00000 * 20 18 16 24 24 H 1.07999 * 119.99987 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00176 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00176 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47181 * 14.99544 * 3 2 1 28 28 H 1.08993 * 109.46903 * 254.99305 * 3 2 1 29 29 H 1.07999 * 119.96005 * 0.02562 * 6 5 4 30 30 H 1.08003 * 119.79445 * 179.97438 * 7 6 5 31 31 H 1.08001 * 119.84975 * 180.02562 * 8 7 6 32 32 H 1.08004 * 120.05205 * 179.74518 * 9 8 7 33 33 H 1.08999 * 109.46670 * 300.00136 * 14 13 11 34 34 H 1.08997 * 109.46998 * 59.99488 * 14 13 11 35 35 H 1.09002 * 109.46817 * 300.00103 * 15 14 13 36 36 H 1.08992 * 109.47171 * 59.99811 * 15 14 13 37 37 H 0.97001 * 120.00199 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9528 5 6 3.9080 2.3430 1.0780 6 6 3.6597 3.4653 0.3018 7 6 4.4563 4.5856 0.4301 8 6 5.5070 4.5993 1.3332 9 6 5.7675 3.4942 2.1135 10 6 4.9693 2.3531 1.9941 11 6 5.2425 1.1669 2.8253 12 8 4.5460 0.1770 2.7190 13 8 6.2647 1.1802 3.7032 14 6 6.4755 -0.0230 4.4881 15 6 7.6706 0.1797 5.4216 16 6 7.8889 -1.0689 6.2366 17 1 7.2404 -1.9219 6.1019 18 6 8.9172 -1.1227 7.1534 19 7 9.7079 -0.0845 7.3164 20 14 9.1883 -2.6707 8.1632 21 1 9.4578 -3.8137 7.2544 22 1 10.3482 -2.4739 9.0694 23 1 7.9739 -2.9549 8.9692 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3854 2.1161 0.2659 28 1 2.4755 1.4868 -0.9926 29 1 2.8422 3.4630 -0.4039 30 1 4.2590 5.4568 -0.1770 31 1 6.1243 5.4806 1.4265 32 1 6.5902 3.5079 2.8131 33 1 5.5841 -0.2316 5.0797 34 1 6.6733 -0.8620 3.8209 35 1 8.5622 0.3886 4.8302 36 1 7.4724 1.0185 6.0887 37 1 10.4311 -0.1222 7.9617 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192667222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:54 Heat of formation + Delta-G solvation = -83.802105 kcal Electronic energy + Delta-G solvation = -20227.331592 eV Core-core repulsion = 16935.672135 eV Total energy + Delta-G solvation = -3291.659457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63278 -39.25688 -37.63895 -35.84601 -34.29811 -33.30060 -31.64627 -30.14855 -30.03352 -26.88212 -25.30949 -23.89754 -22.34752 -21.18392 -20.60188 -19.99109 -18.41338 -17.40569 -16.65780 -16.30347 -16.15343 -15.71781 -15.53707 -14.96305 -14.73900 -14.52689 -14.29824 -13.62791 -13.20312 -12.93948 -12.71640 -12.58062 -12.31766 -11.89362 -11.55966 -11.43729 -11.18207 -11.15364 -10.99464 -10.66995 -10.65222 -10.06632 -9.79523 -9.55449 -9.53785 -9.26824 -9.20608 -8.41769 -8.39545 -6.06912 -4.10935 0.72784 1.24464 1.78217 2.87099 3.12846 3.24116 3.32854 3.36543 3.41340 3.76896 4.41677 4.44020 4.64787 4.64901 4.76039 4.88291 4.97862 5.07357 5.17314 5.26820 5.29583 5.46913 5.55940 5.73239 6.00802 6.10389 6.17990 6.20692 6.25414 6.28696 6.30797 6.56301 6.70979 7.06831 7.22217 7.61122 7.67690 7.91569 8.26245 8.39688 8.94453 9.53140 11.04656 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020774 B = 0.003576 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.527255 B = 7828.109619 C = 9124.508109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.149 4.149 3 C 0.080 3.920 4 O -0.276 6.276 5 C 0.187 3.813 6 C -0.229 4.229 7 C -0.050 4.050 8 C -0.174 4.174 9 C -0.021 4.021 10 C -0.154 4.154 11 C 0.499 3.501 12 O -0.497 6.497 13 O -0.356 6.356 14 C 0.078 3.922 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.500 9.443 -16.996 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C 0.006 3.994 4 O -0.187 6.187 5 C 0.139 3.861 6 C -0.247 4.247 7 C -0.068 4.068 8 C -0.192 4.192 9 C -0.040 4.040 10 C -0.156 4.156 11 C 0.343 3.657 12 O -0.387 6.387 13 O -0.273 6.273 14 C 0.005 3.995 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.126 0.874 25 H 0.116 0.884 26 H 0.140 0.860 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.167 0.833 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.526 8.978 -16.785 23.944 hybrid contribution 0.058 -0.780 0.425 0.890 sum -14.468 8.199 -16.359 23.327 Atomic orbital electron populations 1.23842 0.95338 1.02455 0.99581 1.22673 0.95624 0.97938 1.00505 1.21934 0.88124 0.97140 0.92252 1.86404 1.40952 1.34245 1.57146 1.19010 0.88960 0.86082 0.92048 1.21159 1.04754 0.94201 1.04609 1.21152 0.92993 0.96899 0.95736 1.21073 0.99964 0.99329 0.98822 1.21502 0.96382 0.90283 0.95793 1.18697 0.99689 0.95521 1.01695 1.20779 0.79028 0.86949 0.78990 1.90838 1.47691 1.34042 1.66101 1.86550 1.47464 1.44341 1.48978 1.23611 1.01125 0.82549 0.92219 1.19157 0.90871 0.98199 0.92954 1.20958 1.14748 0.99462 1.21257 0.92304 1.24975 0.95613 0.96612 0.96933 1.69963 1.18041 1.29623 1.35318 0.86533 0.77732 0.83083 0.79952 1.20068 1.21146 1.20073 0.87411 0.88380 0.85953 0.91396 0.90913 0.84864 0.85305 0.84985 0.83304 0.92373 0.92370 0.95361 0.95360 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 14.31 29.01 0.42 -0.96 16 2 C -0.15 -1.48 9.89 -36.02 -0.36 -1.83 16 3 C 0.08 0.81 5.15 36.01 0.19 0.99 16 4 O -0.28 -4.12 8.19 -40.50 -0.33 -4.45 16 5 C 0.19 2.64 6.70 -38.67 -0.26 2.38 16 6 C -0.23 -2.36 9.03 -39.48 -0.36 -2.71 16 7 C -0.05 -0.45 10.03 -39.53 -0.40 -0.84 16 8 C -0.17 -1.76 10.02 -39.64 -0.40 -2.16 16 9 C -0.02 -0.28 9.61 -39.18 -0.38 -0.66 16 10 C -0.15 -2.47 5.89 -104.86 -0.62 -3.09 16 11 C 0.50 9.96 7.89 34.46 0.27 10.23 16 12 O -0.50 -11.07 14.95 -26.60 -0.40 -11.47 16 13 O -0.36 -7.61 9.47 -40.62 -0.38 -8.00 16 14 C 0.08 1.81 5.41 37.16 0.20 2.01 16 15 C 0.03 0.68 5.35 -27.89 -0.15 0.53 16 16 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 20 Si 0.90 21.71 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H 0.11 0.72 8.06 -52.49 -0.42 0.29 16 25 H 0.10 0.63 7.90 -52.49 -0.41 0.21 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.07 0.56 7.38 -51.93 -0.38 0.17 16 28 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 29 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 30 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.15 1.94 7.61 -52.48 -0.40 1.54 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -33.44 328.31 -7.55 -40.99 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -4.85 Total: -2.88 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.25 Total: -9.87 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -1.11 Total: -23.91 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.44 -7.55 -40.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192667222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.816 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds