Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99673 * 2 1 4 4 O 1.42908 * 109.46785 * 134.99579 * 3 2 1 5 5 C 1.35638 * 116.99244 * 179.97438 * 4 3 2 6 6 C 1.38702 * 120.15986 * 0.02562 * 5 4 3 7 7 C 1.38060 * 120.08999 * 180.02562 * 6 5 4 8 8 C 1.38557 * 120.40270 * 359.95400 * 7 6 5 9 9 C 1.37765 * 120.31024 * 359.97438 * 8 7 6 10 10 C 1.39768 * 119.90177 * 0.02655 * 9 8 7 11 11 C 1.47397 * 120.19768 * 179.97438 * 10 9 8 12 12 O 1.21508 * 119.99935 * 179.97438 * 11 10 9 13 13 O 1.34749 * 120.00301 * 359.97438 * 11 10 9 14 14 C 1.45201 * 117.00645 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47500 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47163 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99827 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00098 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00121 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00282 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47114 * 59.99586 * 20 18 16 22 22 H 1.48500 * 109.47481 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47009 * 300.00000 * 20 18 16 24 24 H 1.07999 * 119.99987 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00176 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00176 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47181 * 14.99544 * 3 2 1 28 28 H 1.08993 * 109.46903 * 254.99305 * 3 2 1 29 29 H 1.07999 * 119.96005 * 0.02562 * 6 5 4 30 30 H 1.08003 * 119.79445 * 179.97438 * 7 6 5 31 31 H 1.08001 * 119.84975 * 180.02562 * 8 7 6 32 32 H 1.08004 * 120.05205 * 179.74518 * 9 8 7 33 33 H 1.08999 * 109.46670 * 300.00136 * 14 13 11 34 34 H 1.08997 * 109.46998 * 59.99488 * 14 13 11 35 35 H 1.09002 * 109.46817 * 300.00103 * 15 14 13 36 36 H 1.08992 * 109.47171 * 59.99811 * 15 14 13 37 37 H 0.97001 * 120.00199 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9528 5 6 3.9080 2.3430 1.0780 6 6 3.6597 3.4653 0.3018 7 6 4.4563 4.5856 0.4301 8 6 5.5070 4.5993 1.3332 9 6 5.7675 3.4942 2.1135 10 6 4.9693 2.3531 1.9941 11 6 5.2425 1.1669 2.8253 12 8 4.5460 0.1770 2.7190 13 8 6.2647 1.1802 3.7032 14 6 6.4755 -0.0230 4.4881 15 6 7.6706 0.1797 5.4216 16 6 7.8889 -1.0689 6.2366 17 1 7.2404 -1.9219 6.1019 18 6 8.9172 -1.1227 7.1534 19 7 9.7079 -0.0845 7.3164 20 14 9.1883 -2.6707 8.1632 21 1 9.4578 -3.8137 7.2544 22 1 10.3482 -2.4739 9.0694 23 1 7.9739 -2.9549 8.9692 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3854 2.1161 0.2659 28 1 2.4755 1.4868 -0.9926 29 1 2.8422 3.4630 -0.4039 30 1 4.2590 5.4568 -0.1770 31 1 6.1243 5.4806 1.4265 32 1 6.5902 3.5079 2.8131 33 1 5.5841 -0.2316 5.0797 34 1 6.6733 -0.8620 3.8209 35 1 8.5622 0.3886 4.8302 36 1 7.4724 1.0185 6.0887 37 1 10.4311 -0.1222 7.9617 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192667222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = -102.542303 kcal Electronic energy + Delta-G solvation = -20228.144228 eV Core-core repulsion = 16935.672135 eV Total energy + Delta-G solvation = -3292.472093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.79399 -40.65577 -38.55589 -37.55598 -35.46086 -35.02201 -32.87106 -31.96066 -31.00420 -27.70124 -27.17746 -25.25582 -23.38282 -22.85958 -22.05634 -20.83073 -19.47052 -18.89483 -18.18641 -17.77572 -17.56579 -17.09503 -16.71475 -16.54319 -15.80364 -15.56921 -15.36792 -15.07753 -14.41923 -14.33861 -14.27237 -13.70156 -13.54671 -13.10904 -13.10270 -12.79561 -12.57768 -12.57677 -12.36664 -12.22022 -11.97673 -11.82278 -11.52225 -11.48877 -11.27562 -10.62208 -10.47187 -10.14940 -9.32985 -8.28098 -6.41777 -0.30971 0.36230 1.09093 1.39697 1.44080 1.51673 1.54848 1.73036 2.30663 2.39691 2.74398 3.05861 3.61889 3.75211 3.84419 3.99217 4.07590 4.17598 4.18634 4.24202 4.31910 4.37423 4.46790 4.50852 4.66147 4.85078 4.93198 5.09669 5.23157 5.30364 5.42761 5.44141 5.52282 5.57944 5.62342 5.72286 5.75177 6.05111 6.34476 6.69949 6.77800 7.27783 8.84503 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020774 B = 0.003576 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.527255 B = 7828.109619 C = 9124.508109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.184 4.184 3 C 0.075 3.925 4 O -0.314 6.314 5 C 0.174 3.826 6 C -0.220 4.220 7 C -0.028 4.028 8 C -0.167 4.167 9 C -0.034 4.034 10 C -0.195 4.195 11 C 0.493 3.507 12 O -0.531 6.531 13 O -0.362 6.362 14 C 0.093 3.907 15 C 0.034 3.966 16 C -0.554 4.554 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.975 3.025 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.266 1.266 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.177 0.823 31 H 0.164 0.836 32 H 0.138 0.862 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 10.928 -18.464 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.202 4.202 3 C 0.002 3.998 4 O -0.226 6.226 5 C 0.126 3.874 6 C -0.239 4.239 7 C -0.046 4.046 8 C -0.184 4.184 9 C -0.052 4.052 10 C -0.197 4.197 11 C 0.340 3.660 12 O -0.422 6.422 13 O -0.279 6.279 14 C 0.019 3.981 15 C -0.003 4.003 16 C -0.592 4.592 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.798 3.202 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.191 1.191 24 H 0.136 0.864 25 H 0.137 0.863 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.185 0.815 30 H 0.194 0.806 31 H 0.181 0.819 32 H 0.156 0.844 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.944 10.478 -18.272 26.417 hybrid contribution 0.401 -1.117 0.762 1.410 sum -15.543 9.361 -17.510 25.215 Atomic orbital electron populations 1.24099 0.94566 1.03941 0.96447 1.22688 0.96516 0.97503 1.03488 1.22220 0.87515 0.97784 0.92317 1.86356 1.42213 1.35349 1.58713 1.19272 0.88540 0.87241 0.92348 1.21571 1.05545 0.92891 1.03847 1.21734 0.90902 0.97599 0.94366 1.21455 1.00440 0.98863 0.97682 1.21540 0.96100 0.90800 0.96780 1.18692 1.02649 0.94874 1.03464 1.21645 0.77733 0.88173 0.78405 1.90799 1.48629 1.35627 1.67156 1.86543 1.48745 1.43104 1.49541 1.23147 0.99555 0.83411 0.91955 1.18957 0.91325 0.97186 0.92820 1.21340 1.15499 1.00149 1.22179 0.91858 1.25970 0.94964 1.00301 0.97951 1.70085 1.18529 1.31867 1.36002 0.85357 0.78069 0.78525 0.78236 1.19070 1.20197 1.19072 0.86448 0.86287 0.88014 0.89148 0.89015 0.81460 0.80578 0.81880 0.84384 0.92595 0.92584 0.97399 0.97396 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 14.31 67.78 0.97 -1.19 16 2 C -0.18 -3.59 9.89 25.65 0.25 -3.34 16 3 C 0.08 1.42 5.15 71.24 0.37 1.79 16 4 O -0.31 -9.50 8.19 -68.59 -0.56 -10.06 16 5 C 0.17 4.81 6.70 22.86 0.15 4.97 16 6 C -0.22 -3.78 9.03 22.34 0.20 -3.58 16 7 C -0.03 -0.38 10.03 22.30 0.22 -0.15 16 8 C -0.17 -2.87 10.02 22.23 0.22 -2.65 16 9 C -0.03 -0.90 9.61 22.53 0.22 -0.68 16 10 C -0.19 -6.44 5.89 -20.02 -0.12 -6.56 16 11 C 0.49 20.99 7.89 70.23 0.55 21.54 16 12 O -0.53 -25.16 14.95 26.81 0.40 -24.76 16 13 O -0.36 -16.52 9.47 -56.59 -0.54 -17.05 16 14 C 0.09 4.59 5.41 71.98 0.39 4.98 16 15 C 0.03 1.94 5.35 29.85 0.16 2.10 16 16 C -0.55 -32.71 9.11 25.60 0.23 -32.47 16 17 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 18 C 0.01 0.42 5.46 84.65 0.46 0.88 16 19 N -0.93 -56.54 13.29 21.44 0.28 -56.26 16 20 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H 0.12 1.38 8.06 -2.91 -0.02 1.35 16 25 H 0.12 1.16 7.90 -2.91 -0.02 1.13 16 26 H 0.10 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.09 1.23 7.38 -2.39 -0.02 1.21 16 28 H 0.09 1.29 7.66 -2.39 -0.02 1.27 16 29 H 0.17 1.67 6.30 -2.91 -0.02 1.65 16 30 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.14 3.79 7.61 -2.91 -0.02 3.77 16 33 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -76.64 328.31 6.96 -69.68 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.06 Total: 6.10 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.29 Total: -14.36 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.28 Total: -56.26 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.70 Total: -51.87 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -76.64 6.96 -69.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192667222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.867 kcal (2) G-P(sol) polarization free energy of solvation -76.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds