Wall clock time and date at job start Mon Mar 30 2020 01:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47439 * 2 1 4 4 C 1.50704 * 109.46919 * 119.99974 * 2 1 3 5 5 H 1.07997 * 120.00291 * 120.00391 * 4 2 1 6 6 C 1.37877 * 119.99891 * 299.99721 * 4 2 1 7 7 N 1.31514 * 120.00059 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99976 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46839 * 90.00435 * 8 6 4 10 10 H 1.48500 * 109.47002 * 210.00008 * 8 6 4 11 11 H 1.48496 * 109.47021 * 330.00324 * 8 6 4 12 12 N 1.46505 * 109.47159 * 239.99602 * 2 1 3 13 13 C 1.34773 * 119.99528 * 85.00286 * 12 2 1 14 14 O 1.21659 * 120.00571 * 0.02562 * 13 12 2 15 15 C 1.46993 * 119.99940 * 179.97438 * 13 12 2 16 16 C 1.35891 * 125.44168 * 179.97438 * 15 13 12 17 17 C 1.41522 * 107.73611 * 180.02562 * 16 15 13 18 18 C 1.40861 * 107.00085 * 359.97438 * 17 16 15 19 19 C 1.39162 * 119.54869 * 179.97438 * 18 17 16 20 20 C 1.37724 * 120.00356 * 0.04506 * 19 18 17 21 21 C 1.38839 * 120.68286 * 359.95334 * 20 19 18 22 22 C 1.37721 * 120.44512 * 0.02562 * 21 20 19 23 23 F 1.35110 * 120.16661 * 179.97438 * 22 21 20 24 24 N 1.37522 * 107.37152 * 0.02562 * 18 17 16 25 25 H 0.96998 * 125.61195 * 180.25873 * 24 18 17 26 26 H 1.09001 * 109.46715 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47083 * 300.00152 * 1 2 3 28 28 H 1.09001 * 109.46563 * 60.00380 * 1 2 3 29 29 H 0.97000 * 120.00002 * 179.97438 * 7 6 4 30 30 H 0.96993 * 119.99778 * 264.99536 * 12 2 1 31 31 H 1.07996 * 126.13130 * 0.02562 * 16 15 13 32 32 H 1.08002 * 120.00037 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.65245 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.77338 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5438 4.4119 10 1 1.3444 -0.9488 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1622 -2.4117 15 6 2.6376 -0.7111 -3.5571 16 6 2.8090 -0.1436 -4.7799 17 6 3.2939 -1.1442 -5.6555 18 6 3.4049 -2.3305 -4.9040 19 6 3.8631 -3.4919 -5.5187 20 6 4.2053 -3.4761 -6.8527 21 6 4.0978 -2.3096 -7.5979 22 6 3.6466 -1.1471 -7.0133 23 9 3.5446 -0.0150 -7.7437 24 7 2.9981 -2.0440 -3.6220 25 1 2.9724 -2.6727 -2.8838 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 0.7082 1.1609 3.4844 30 1 2.2491 -1.6318 -1.1525 31 1 2.6106 0.8863 -5.0374 32 1 3.9507 -4.4056 -4.9496 33 1 4.5607 -4.3805 -7.3239 34 1 4.3698 -2.3140 -8.6431 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194649126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:23 Heat of formation + Delta-G solvation = -50.909610 kcal Electronic energy + Delta-G solvation = -20204.675418 eV Core-core repulsion = 16823.274733 eV Total energy + Delta-G solvation = -3381.400685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.85545 -42.63100 -40.40947 -37.65218 -36.86124 -34.46114 -33.00128 -31.55636 -30.22136 -29.70670 -27.39035 -25.38611 -23.45289 -22.97332 -22.03303 -21.20804 -20.03928 -18.87290 -18.05282 -17.33282 -16.84505 -16.78607 -16.72850 -16.39968 -16.19511 -16.01144 -15.21348 -15.01035 -14.73600 -14.46528 -14.21378 -13.94347 -13.76239 -13.05116 -12.94731 -12.81597 -12.55813 -12.47711 -12.37983 -12.30433 -12.16259 -11.23492 -11.15473 -10.91342 -10.64482 -9.99958 -9.41456 -8.77032 -8.20870 -6.39311 -0.40383 0.44282 0.95966 1.44842 1.45284 1.55873 1.77448 2.20761 2.26124 2.45662 2.69163 3.10237 3.25840 3.60582 3.80488 3.95751 4.04837 4.26470 4.40405 4.65829 4.71387 4.74097 4.86595 5.02229 5.07098 5.23855 5.30534 5.34410 5.40802 5.44636 5.50662 5.62093 5.81855 5.98183 6.02791 6.34701 6.64834 6.75279 7.17907 7.35815 8.85684 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.003735 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.007128 B = 7494.489390 C = 8112.634208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.004 0.996 4 C -0.550 4.550 5 H 0.077 0.923 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.975 3.025 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.257 1.257 12 N -0.693 5.693 13 C 0.568 3.432 14 O -0.579 6.579 15 C 0.022 3.978 16 C -0.123 4.123 17 C -0.178 4.178 18 C 0.134 3.866 19 C -0.135 4.135 20 C -0.053 4.053 21 C -0.173 4.173 22 C 0.122 3.878 23 F -0.148 7.148 24 N -0.560 5.560 25 H 0.435 0.565 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.012 0.988 29 H 0.267 0.733 30 H 0.403 0.597 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.181 0.819 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 -13.974 -16.932 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.588 4.588 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.181 1.181 12 N -0.341 5.341 13 C 0.354 3.646 14 O -0.460 6.460 15 C -0.088 4.088 16 C -0.150 4.150 17 C -0.183 4.183 18 C 0.022 3.978 19 C -0.156 4.156 20 C -0.073 4.073 21 C -0.193 4.193 22 C 0.102 3.898 23 F -0.126 7.126 24 N -0.166 5.166 25 H 0.277 0.723 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.238 0.762 31 H 0.162 0.838 32 H 0.181 0.819 33 H 0.198 0.802 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.596 -13.028 -16.623 22.125 hybrid contribution -0.044 0.148 1.278 1.288 sum 6.552 -12.879 -15.344 21.077 Atomic orbital electron populations 1.21922 0.97939 0.99749 0.99832 1.18477 0.91384 0.92167 0.81310 0.97843 1.21501 1.32930 1.13801 0.90522 0.90532 1.25809 0.94739 0.95552 1.02374 1.70048 1.36716 1.23889 1.24785 0.85305 0.77705 0.79233 0.77853 1.20448 1.21007 1.18130 1.46167 1.64538 1.13958 1.09457 1.17604 0.78104 0.86150 0.82732 1.90790 1.53155 1.16900 1.85136 1.19950 1.08586 0.85083 0.95229 1.20846 1.03386 0.99786 0.90972 1.18256 1.10668 0.95382 0.93968 1.18417 1.00134 0.95440 0.83795 1.20584 1.03306 0.95648 0.96024 1.21191 0.95772 0.98299 0.91991 1.21254 1.04403 0.90996 1.02648 1.17529 1.01729 0.83450 0.87075 1.91455 1.93873 1.50425 1.76883 1.41888 1.55729 1.08548 1.10397 0.72308 0.93794 0.91137 0.96860 0.92423 0.76188 0.83829 0.81940 0.80220 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.80 9.26 71.98 0.67 -6.13 16 2 C 0.27 13.78 2.56 44.25 0.11 13.90 16 3 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 4 C -0.55 -28.24 8.73 25.60 0.22 -28.01 16 5 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -51.75 11.32 21.45 0.24 -51.50 16 8 Si 0.97 40.81 29.54 68.60 2.03 42.83 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 12 N -0.69 -28.37 5.07 -449.76 -2.28 -30.65 16 13 C 0.57 23.80 7.76 86.54 0.67 24.47 16 14 O -0.58 -29.58 16.50 -4.22 -0.07 -29.65 16 15 C 0.02 0.73 6.97 39.89 0.28 1.00 16 16 C -0.12 -4.08 10.53 22.53 0.24 -3.85 16 17 C -0.18 -4.94 6.14 -21.33 -0.13 -5.07 16 18 C 0.13 3.02 7.25 39.11 0.28 3.30 16 19 C -0.14 -1.93 10.06 22.37 0.23 -1.70 16 20 C -0.05 -0.61 10.01 22.29 0.22 -0.38 16 21 C -0.17 -2.76 10.00 22.29 0.22 -2.54 16 22 C 0.12 2.96 7.35 22.65 0.17 3.13 16 23 F -0.15 -3.98 17.28 44.97 0.78 -3.20 16 24 N -0.56 -13.50 6.08 -177.18 -1.08 -14.57 16 25 H 0.44 7.79 8.12 -92.71 -0.75 7.03 16 26 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 28 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.40 13.23 7.59 -92.71 -0.70 12.53 16 31 H 0.14 4.97 8.06 -2.91 -0.02 4.95 16 32 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -70.04 302.95 2.96 -67.08 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.29 Total: 20.29 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 3.63 Total: -0.62 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -3.11 Total: -96.73 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.07 Total: -29.65 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -70.04 2.96 -67.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194649126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.171 kcal (2) G-P(sol) polarization free energy of solvation -70.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds