Wall clock time and date at job start Mon Mar 30 2020 02:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.37725 * 2 1 4 4 C 1.53182 * 109.42362 * 119.85579 * 2 1 3 5 5 C 1.51554 * 107.52723 * 163.76903 * 4 2 1 6 6 O 1.20831 * 121.50066 * 121.54838 * 5 4 2 7 7 O 1.34668 * 117.00147 * 301.52435 * 5 4 2 8 8 C 1.36051 * 116.97150 * 41.62002 * 7 5 4 9 9 C 1.39096 * 118.13128 * 169.27754 * 8 7 5 10 10 C 1.38430 * 120.21032 * 179.36146 * 9 8 7 11 11 O 1.35904 * 120.10588 * 179.72632 * 10 9 8 12 12 C 1.42903 * 116.99628 * 179.72502 * 11 10 9 13 13 C 1.53000 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46725 * 60.00093 * 18 16 14 20 20 H 1.48505 * 109.46988 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00069 * 18 16 14 22 22 C 1.38803 * 119.78481 * 359.44983 * 10 9 8 23 23 C 1.37962 * 119.92503 * 0.46757 * 22 10 9 24 24 C 1.38354 * 122.04938 * 348.45631 * 8 7 5 25 25 H 1.08992 * 109.47019 * 179.84620 * 1 2 3 26 26 H 1.08998 * 109.46851 * 299.84634 * 1 2 3 27 27 H 1.08999 * 109.46628 * 59.84064 * 1 2 3 28 28 H 1.08994 * 109.84681 * 44.26088 * 4 2 1 29 29 H 1.09010 * 109.84199 * 283.27410 * 4 2 1 30 30 H 1.08007 * 119.89100 * 359.10374 * 9 8 7 31 31 H 1.09002 * 109.47382 * 59.99787 * 12 11 10 32 32 H 1.09001 * 109.46938 * 299.99774 * 12 11 10 33 33 H 1.09001 * 109.47194 * 299.99575 * 13 12 11 34 34 H 1.08992 * 109.47399 * 59.99748 * 13 12 11 35 35 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 36 36 H 1.07990 * 120.03330 * 180.45035 * 22 10 9 37 37 H 1.08004 * 119.75441 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8917 1.0283 0.0000 4 6 2.0394 -0.7192 1.2529 5 6 3.4998 -1.0541 1.0249 6 8 4.3636 -0.6496 1.7668 7 8 3.7915 -1.8231 -0.0414 8 6 3.1254 -1.5542 -1.1968 9 6 3.5617 -2.1717 -2.3643 10 6 2.9073 -1.9392 -3.5618 11 8 3.3388 -2.5393 -4.7022 12 6 2.6108 -2.2572 -5.8991 13 6 3.2392 -3.0170 -7.0691 14 6 2.4718 -2.7190 -8.3315 15 1 1.6209 -2.0546 -8.3021 16 6 2.8562 -3.2947 -9.5240 17 7 3.8927 -4.1033 -9.5599 18 14 1.9046 -2.9260 -11.0886 19 1 1.9499 -1.4672 -11.3633 20 1 2.5153 -3.6623 -12.2245 21 1 0.4927 -3.3547 -10.9219 22 6 1.8054 -1.0957 -3.5928 23 6 1.3729 -0.4854 -2.4336 24 6 2.0315 -0.7079 -1.2337 25 1 -0.3633 -1.0276 -0.0028 26 1 -0.3633 0.5114 0.8914 27 1 -0.3632 0.5163 -0.8886 28 1 1.4701 -1.6350 1.4111 29 1 1.9404 -0.0663 2.1203 30 1 4.4165 -2.8315 -2.3372 31 1 2.6440 -1.1865 -6.1009 32 1 1.5745 -2.5719 -5.7767 33 1 4.2757 -2.7027 -7.1917 34 1 3.2056 -4.0875 -6.8672 35 1 4.1633 -4.5080 -10.3988 36 1 1.2874 -0.9172 -4.5234 37 1 0.5150 0.1701 -2.4608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194666392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:43 Heat of formation + Delta-G solvation = -119.375459 kcal Electronic energy + Delta-G solvation = -20460.363835 eV Core-core repulsion = 17167.161801 eV Total energy + Delta-G solvation = -3293.202034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.81655 -40.89793 -39.38062 -38.05758 -36.18872 -35.33846 -32.48481 -31.53449 -30.18256 -29.12813 -27.05757 -25.00068 -24.28708 -23.27496 -22.53246 -20.62235 -19.90008 -18.71233 -18.33823 -17.75894 -17.53343 -16.97685 -16.73820 -16.51923 -16.22042 -15.70056 -15.08191 -14.83318 -14.71941 -14.39782 -14.30034 -13.96745 -13.58900 -13.27404 -13.17075 -13.06468 -12.82604 -12.60941 -12.49522 -12.23234 -12.05583 -11.88698 -11.61795 -11.42944 -11.40988 -11.18113 -10.60190 -9.78520 -9.13959 -8.25339 -6.39276 0.00292 0.24137 0.59268 1.42698 1.46614 1.54387 1.64313 2.29719 2.51178 2.56808 2.98130 3.09535 3.46906 3.53605 3.81725 3.93545 4.09910 4.13955 4.29496 4.29604 4.34716 4.53722 4.55704 4.67562 4.75188 4.80645 4.91352 4.97890 5.16127 5.27364 5.32255 5.35169 5.45953 5.47290 5.47904 5.71794 6.00503 6.06646 6.18763 6.45829 6.76116 7.31254 8.87614 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038297 B = 0.003152 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.953787 B = 8881.151985 C = 9512.258307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.037 4.037 3 H 0.103 0.897 4 C -0.151 4.151 5 C 0.486 3.514 6 O -0.478 6.478 7 O -0.318 6.318 8 C 0.148 3.852 9 C -0.194 4.194 10 C 0.147 3.853 11 O -0.338 6.338 12 C 0.083 3.917 13 C 0.026 3.974 14 C -0.546 4.546 15 H 0.075 0.925 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.976 3.024 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.225 4.225 23 C -0.029 4.029 24 C -0.186 4.186 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.069 0.931 33 H -0.004 1.004 34 H -0.002 1.002 35 H 0.266 0.734 36 H 0.146 0.854 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 10.386 20.234 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 H 0.121 0.879 4 C -0.189 4.189 5 C 0.329 3.671 6 O -0.359 6.359 7 O -0.234 6.234 8 C 0.106 3.894 9 C -0.213 4.213 10 C 0.101 3.899 11 O -0.252 6.252 12 C 0.009 3.991 13 C -0.011 4.011 14 C -0.583 4.583 15 H 0.093 0.907 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.243 4.243 23 C -0.047 4.047 24 C -0.187 4.187 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.015 0.985 34 H 0.016 0.984 35 H 0.075 0.925 36 H 0.164 0.836 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.464 10.201 20.473 25.153 hybrid contribution 0.466 -0.519 -1.105 1.307 sum -9.998 9.682 19.368 23.850 Atomic orbital electron populations 1.21910 0.90196 1.03413 1.04223 1.20114 0.99138 0.98957 0.87266 0.87885 1.22647 0.88356 1.05835 1.02027 1.24362 0.93336 0.71566 0.77812 1.90663 1.55076 1.44016 1.46184 1.84281 1.64580 1.54876 1.19647 1.18064 0.91933 0.97150 0.82271 1.19702 1.04899 1.07775 0.88932 1.18902 0.93101 0.91998 0.85917 1.86107 1.56282 1.66808 1.15980 1.22984 0.95219 1.00203 0.80728 1.18983 0.95840 0.94842 0.91473 1.21392 1.14850 1.29173 0.92904 0.90653 1.26057 0.96037 0.94429 1.03272 1.70119 1.27481 1.31554 1.28075 0.85338 0.78753 0.78812 0.77178 1.18741 1.21128 1.18646 1.21589 0.98846 1.02159 1.01752 1.21117 0.98409 0.96254 0.88911 1.20015 0.96973 1.03125 0.98612 0.91877 0.89650 0.90454 0.85126 0.84314 0.85249 0.91410 0.91244 0.98513 0.98396 0.92506 0.83620 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.65 71.98 0.62 -0.21 16 2 C -0.04 -0.41 2.94 -11.44 -0.03 -0.45 16 3 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.15 -1.76 5.71 30.18 0.17 -1.59 16 5 C 0.49 11.15 7.60 71.51 0.54 11.70 16 6 O -0.48 -13.91 17.96 21.83 0.39 -13.52 16 7 O -0.32 -8.77 10.09 -0.99 -0.01 -8.78 16 8 C 0.15 3.91 6.50 22.50 0.15 4.06 16 9 C -0.19 -6.11 9.86 22.52 0.22 -5.89 16 10 C 0.15 4.87 6.68 22.45 0.15 5.02 16 11 O -0.34 -13.77 10.14 -92.47 -0.94 -14.71 16 12 C 0.08 3.39 4.68 71.98 0.34 3.73 16 13 C 0.03 1.38 5.34 29.85 0.16 1.54 16 14 C -0.55 -29.87 9.11 25.60 0.23 -29.64 16 15 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 18 Si 0.98 42.48 29.54 68.60 2.03 44.51 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 22 C -0.22 -5.79 9.04 22.34 0.20 -5.59 16 23 C -0.03 -0.55 9.08 22.31 0.20 -0.34 16 24 C -0.19 -3.62 5.46 -19.70 -0.11 -3.73 16 25 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.08 0.36 6.43 -2.39 -0.02 0.34 16 28 H 0.13 1.10 8.06 -2.39 -0.02 1.08 16 29 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.07 2.55 7.67 -2.39 -0.02 2.53 16 32 H 0.07 2.59 7.66 -2.39 -0.02 2.57 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.15 3.50 6.31 -2.92 -0.02 3.48 16 37 H 0.17 1.83 6.32 -2.91 -0.02 1.81 16 Total: -1.00 -71.26 313.84 6.15 -65.11 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.08 Total: 4.38 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 3.31 Total: -20.91 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.56 Total: -37.01 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -71.26 6.15 -65.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194666392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.262 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds