Wall clock time and date at job start Mon Mar 30 2020 01:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21251 * 119.99434 * 2 1 4 4 C 1.47183 * 120.00398 * 180.02562 * 2 1 3 5 5 C 1.39610 * 120.09635 * 353.92542 * 4 2 1 6 6 C 1.39285 * 119.67120 * 180.02562 * 5 4 2 7 7 C 1.47745 * 120.06466 * 179.97438 * 6 5 4 8 8 O 1.21474 * 119.99828 * 0.02562 * 7 6 5 9 9 O 1.34709 * 120.00286 * 180.02562 * 7 6 5 10 10 C 1.45195 * 117.00268 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47315 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47393 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99546 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00037 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99895 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99872 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47026 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47216 * 119.99916 * 16 14 12 19 19 H 1.48498 * 109.46917 * 240.00010 * 16 14 12 20 20 C 1.39794 * 119.86900 * 0.25564 * 6 5 4 21 21 C 1.38088 * 120.19675 * 359.50971 * 20 6 5 22 22 C 1.38035 * 120.32897 * 0.47010 * 21 20 6 23 23 C 1.50700 * 119.93349 * 179.75918 * 22 21 20 24 24 H 1.09001 * 109.46979 * 269.99281 * 1 2 3 25 25 H 1.08994 * 109.47608 * 29.99831 * 1 2 3 26 26 H 1.09003 * 109.47060 * 150.00223 * 1 2 3 27 27 H 1.07998 * 120.16225 * 0.04914 * 5 4 2 28 28 H 1.08996 * 109.47565 * 59.99369 * 10 9 7 29 29 H 1.09011 * 109.46435 * 299.99417 * 10 9 7 30 30 H 1.09006 * 109.47029 * 299.99573 * 11 10 9 31 31 H 1.08996 * 109.47343 * 59.99204 * 11 10 9 32 32 H 0.97007 * 119.99792 * 180.02562 * 15 14 12 33 33 H 1.07997 * 119.89766 * 179.72416 * 20 6 5 34 34 H 1.08001 * 119.83362 * 180.20783 * 21 20 6 35 35 H 1.08995 * 109.47356 * 263.31654 * 23 22 21 36 36 H 1.09002 * 109.47253 * 23.32631 * 23 22 21 37 37 H 1.09002 * 109.46751 * 143.31944 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 1.5529 -2.4815 0.1267 6 6 2.2584 -3.6825 0.1256 7 6 1.5369 -4.9648 0.2603 8 8 0.3273 -4.9723 0.3717 9 8 2.2205 -6.1256 0.2597 10 6 1.4465 -7.3465 0.3953 11 6 2.3880 -8.5523 0.3741 12 6 1.5847 -9.8195 0.5156 13 1 0.5101 -9.7697 0.6115 14 6 2.2216 -11.0423 0.5226 15 7 3.5301 -11.1029 0.4053 16 14 1.2259 -12.6130 0.6987 17 1 -0.2155 -12.2750 0.8139 18 1 1.4398 -13.4711 -0.4944 19 1 1.6620 -13.3415 1.9170 20 6 3.6508 -3.6719 0.0027 21 6 4.3275 -2.4753 -0.1277 22 6 3.6365 -1.2803 -0.1281 23 6 4.3845 0.0208 -0.2655 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4774 -2.4839 0.2251 28 1 0.7396 -7.4224 -0.4309 29 1 0.9015 -7.3281 1.3393 30 1 2.9333 -8.5709 -0.5695 31 1 3.0945 -8.4762 1.2006 32 1 3.9781 -11.9632 0.4098 33 1 4.1987 -4.6026 0.0063 34 1 5.4030 -2.4741 -0.2256 35 1 4.5542 0.4484 0.7226 36 1 5.3426 -0.1606 -0.7526 37 1 3.7974 0.7156 -0.8661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195052320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:11 Heat of formation + Delta-G solvation = -112.519230 kcal Electronic energy + Delta-G solvation = -20068.992834 eV Core-core repulsion = 16776.088109 eV Total energy + Delta-G solvation = -3292.904725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72751 -39.80205 -38.20861 -36.15516 -33.44272 -33.14243 -32.40058 -30.31571 -29.70155 -27.74549 -25.21886 -23.99372 -22.96281 -21.22789 -20.88473 -19.84713 -17.81602 -16.83589 -16.27515 -16.01002 -15.83533 -15.80058 -15.43336 -15.23859 -14.54101 -14.34382 -14.16166 -13.78837 -13.36680 -12.90731 -12.66866 -12.50181 -12.39959 -12.21356 -12.18117 -12.06604 -11.65345 -11.28910 -11.07542 -10.81443 -10.73992 -10.37272 -9.81184 -9.71613 -9.66119 -9.32744 -9.32579 -9.07390 -8.48178 -6.14096 -4.18450 0.30343 0.67619 2.00036 2.70139 3.00600 3.25338 3.33056 3.37931 3.58279 3.74179 4.35488 4.41658 4.52399 4.71583 4.84313 4.89030 4.98662 5.10849 5.15181 5.22846 5.37188 5.39900 5.47118 5.57684 5.69735 5.80737 5.96941 6.03144 6.03887 6.04689 6.21046 6.48420 6.58109 6.86489 7.21519 7.50915 7.57329 7.82230 8.08963 8.20297 8.87245 9.46278 10.97439 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.003002 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.016822 B = 9326.238770 C =10003.729299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.399 3.601 3 O -0.456 6.456 4 C -0.194 4.194 5 C -0.007 4.007 6 C -0.137 4.137 7 C 0.502 3.498 8 O -0.514 6.514 9 O -0.351 6.351 10 C 0.076 3.924 11 C 0.024 3.976 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.023 4.023 21 C -0.148 4.148 22 C 0.003 3.997 23 C -0.126 4.126 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.147 0.853 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 21.391 -1.400 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.279 3.721 3 O -0.333 6.333 4 C -0.195 4.195 5 C -0.026 4.026 6 C -0.138 4.138 7 C 0.346 3.654 8 O -0.405 6.405 9 O -0.268 6.268 10 C 0.004 3.996 11 C -0.013 4.013 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.042 4.042 21 C -0.166 4.166 22 C 0.003 3.997 23 C -0.182 4.182 24 H 0.118 0.882 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.165 0.835 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.230 21.750 -1.373 21.795 hybrid contribution -0.631 -1.276 0.146 1.431 sum -0.861 20.474 -1.227 20.529 Atomic orbital electron populations 1.22268 0.93524 1.05181 1.05055 1.22388 0.91669 0.87266 0.70793 1.90489 1.71539 1.34417 1.36853 1.20245 0.94047 0.94672 1.10534 1.21570 1.00806 0.89724 0.90473 1.19220 0.94048 0.91151 1.09404 1.21005 0.85827 0.85126 0.73392 1.90796 1.15070 1.88408 1.46241 1.86559 1.42708 1.15397 1.82087 1.23704 0.95400 0.79640 1.00897 1.19184 0.94730 0.88468 0.98912 1.21008 0.93674 0.90285 1.51478 0.92169 1.24984 0.94993 0.99328 0.94854 1.69981 1.07815 1.25465 1.49554 0.86414 0.80288 0.82818 0.77789 1.19570 1.20812 1.20818 1.21877 0.93043 0.99528 0.89716 1.21114 1.00756 0.91171 1.03565 1.20488 0.92451 0.96341 0.90468 1.21175 0.99537 0.94006 1.03510 0.88223 0.89250 0.89282 0.83493 0.92114 0.92126 0.95296 0.95304 0.92735 0.83314 0.84390 0.90144 0.91709 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 9.63 36.00 0.35 -1.04 16 2 C 0.40 3.91 7.16 -30.68 -0.22 3.69 16 3 O -0.46 -5.37 14.07 5.58 0.08 -5.29 16 4 C -0.19 -2.06 5.86 -105.12 -0.62 -2.68 16 5 C -0.01 -0.09 8.86 -38.68 -0.34 -0.43 16 6 C -0.14 -1.87 5.87 -105.04 -0.62 -2.48 16 7 C 0.50 8.70 7.90 34.62 0.27 8.97 16 8 O -0.51 -9.88 16.13 -19.25 -0.31 -10.19 16 9 O -0.35 -6.81 9.46 -40.51 -0.38 -7.19 16 10 C 0.08 1.65 5.41 37.15 0.20 1.85 16 11 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 12 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 16 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.02 -0.28 9.61 -39.06 -0.38 -0.65 16 21 C -0.15 -1.47 9.64 -39.71 -0.38 -1.85 16 22 C 0.00 0.03 5.93 -104.06 -0.62 -0.59 16 23 C -0.13 -1.11 8.72 36.01 0.31 -0.80 16 24 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.54 6.72 -51.93 -0.35 0.19 16 27 H 0.15 1.52 6.11 -52.49 -0.32 1.20 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.15 1.72 7.60 -52.49 -0.40 1.32 16 34 H 0.14 1.03 8.05 -52.49 -0.42 0.61 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.45 8.03 -51.93 -0.42 0.04 16 37 H 0.09 0.91 5.85 -51.93 -0.30 0.61 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -31.56 323.71 -7.33 -38.89 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -4.71 Total: -3.12 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.60 Total: -8.83 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.62 Total: -22.67 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.56 -7.33 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195052320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.629 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds