Wall clock time and date at job start Mon Mar 30 2020 01:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21251 * 119.99434 * 2 1 4 4 C 1.47183 * 120.00398 * 180.02562 * 2 1 3 5 5 C 1.39610 * 120.09635 * 353.92542 * 4 2 1 6 6 C 1.39285 * 119.67120 * 180.02562 * 5 4 2 7 7 C 1.47745 * 120.06466 * 179.97438 * 6 5 4 8 8 O 1.21474 * 119.99828 * 0.02562 * 7 6 5 9 9 O 1.34709 * 120.00286 * 180.02562 * 7 6 5 10 10 C 1.45195 * 117.00268 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47315 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47393 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99546 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00037 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99895 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99872 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47026 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47216 * 119.99916 * 16 14 12 19 19 H 1.48498 * 109.46917 * 240.00010 * 16 14 12 20 20 C 1.39794 * 119.86900 * 0.25564 * 6 5 4 21 21 C 1.38088 * 120.19675 * 359.50971 * 20 6 5 22 22 C 1.38035 * 120.32897 * 0.47010 * 21 20 6 23 23 C 1.50700 * 119.93349 * 179.75918 * 22 21 20 24 24 H 1.09001 * 109.46979 * 269.99281 * 1 2 3 25 25 H 1.08994 * 109.47608 * 29.99831 * 1 2 3 26 26 H 1.09003 * 109.47060 * 150.00223 * 1 2 3 27 27 H 1.07998 * 120.16225 * 0.04914 * 5 4 2 28 28 H 1.08996 * 109.47565 * 59.99369 * 10 9 7 29 29 H 1.09011 * 109.46435 * 299.99417 * 10 9 7 30 30 H 1.09006 * 109.47029 * 299.99573 * 11 10 9 31 31 H 1.08996 * 109.47343 * 59.99204 * 11 10 9 32 32 H 0.97007 * 119.99792 * 180.02562 * 15 14 12 33 33 H 1.07997 * 119.89766 * 179.72416 * 20 6 5 34 34 H 1.08001 * 119.83362 * 180.20783 * 21 20 6 35 35 H 1.08995 * 109.47356 * 263.31654 * 23 22 21 36 36 H 1.09002 * 109.47253 * 23.32631 * 23 22 21 37 37 H 1.09002 * 109.46751 * 143.31944 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 1.5529 -2.4815 0.1267 6 6 2.2584 -3.6825 0.1256 7 6 1.5369 -4.9648 0.2603 8 8 0.3273 -4.9723 0.3717 9 8 2.2205 -6.1256 0.2597 10 6 1.4465 -7.3465 0.3953 11 6 2.3880 -8.5523 0.3741 12 6 1.5847 -9.8195 0.5156 13 1 0.5101 -9.7697 0.6115 14 6 2.2216 -11.0423 0.5226 15 7 3.5301 -11.1029 0.4053 16 14 1.2259 -12.6130 0.6987 17 1 -0.2155 -12.2750 0.8139 18 1 1.4398 -13.4711 -0.4944 19 1 1.6620 -13.3415 1.9170 20 6 3.6508 -3.6719 0.0027 21 6 4.3275 -2.4753 -0.1277 22 6 3.6365 -1.2803 -0.1281 23 6 4.3845 0.0208 -0.2655 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4774 -2.4839 0.2251 28 1 0.7396 -7.4224 -0.4309 29 1 0.9015 -7.3281 1.3393 30 1 2.9333 -8.5709 -0.5695 31 1 3.0945 -8.4762 1.2006 32 1 3.9781 -11.9632 0.4098 33 1 4.1987 -4.6026 0.0063 34 1 5.4030 -2.4741 -0.2256 35 1 4.5542 0.4484 0.7226 36 1 5.3426 -0.1606 -0.7526 37 1 3.7974 0.7156 -0.8661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195052320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:10 Heat of formation + Delta-G solvation = -129.008732 kcal Electronic energy + Delta-G solvation = -20069.707873 eV Core-core repulsion = 16776.088109 eV Total energy + Delta-G solvation = -3293.619764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.79482 -40.98135 -39.14865 -37.68644 -35.46080 -34.07922 -33.26708 -32.25090 -30.41602 -28.68922 -27.03997 -24.97639 -24.14813 -22.86506 -22.04350 -20.92682 -19.07227 -18.41096 -17.92374 -17.55459 -16.83180 -16.70647 -16.57001 -16.21479 -16.16757 -15.16534 -15.13053 -15.04350 -14.47942 -14.39251 -14.35670 -13.33416 -13.24226 -13.10945 -13.09336 -12.99051 -12.89761 -12.85514 -12.61723 -12.61508 -12.48521 -11.91233 -11.56100 -11.50228 -11.37424 -10.61923 -10.55834 -10.19392 -9.99349 -8.27455 -6.40270 -0.60685 -0.25630 1.11892 1.41316 1.41922 1.54390 1.56847 1.64029 2.39916 2.62067 3.00299 3.07379 3.49241 3.62225 3.79748 3.92443 4.07009 4.21630 4.22043 4.23215 4.44745 4.55165 4.59476 4.64852 4.68555 4.77802 4.84187 4.95509 5.08525 5.15919 5.19655 5.25046 5.41531 5.46519 5.48937 5.64402 5.73219 6.06206 6.46173 6.63016 6.73777 7.29596 8.85309 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.003002 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.016822 B = 9326.238770 C =10003.729299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.401 3.599 3 O -0.478 6.478 4 C -0.199 4.199 5 C 0.000 4.000 6 C -0.159 4.159 7 C 0.502 3.498 8 O -0.537 6.537 9 O -0.358 6.358 10 C 0.091 3.909 11 C 0.031 3.969 12 C -0.549 4.549 13 H 0.065 0.935 14 C 0.006 3.994 15 N -0.926 5.926 16 Si 0.973 3.027 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.276 1.276 20 C -0.028 4.028 21 C -0.140 4.140 22 C 0.003 3.997 23 C -0.123 4.123 24 H 0.114 0.886 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.157 0.843 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.268 0.732 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 22.237 -1.421 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.282 3.718 3 O -0.356 6.356 4 C -0.200 4.200 5 C -0.019 4.019 6 C -0.160 4.160 7 C 0.349 3.651 8 O -0.429 6.429 9 O -0.274 6.274 10 C 0.018 3.982 11 C -0.006 4.006 12 C -0.587 4.587 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.565 5.565 16 Si 0.797 3.203 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.046 4.046 21 C -0.157 4.157 22 C 0.003 3.997 23 C -0.179 4.179 24 H 0.132 0.868 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.175 0.825 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.165 0.835 34 H 0.185 0.815 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.656 22.616 -1.396 22.669 hybrid contribution -0.430 -1.402 0.141 1.473 sum -1.086 21.214 -1.255 21.279 Atomic orbital electron populations 1.22304 0.91139 1.06090 1.06223 1.22704 0.92911 0.86410 0.69808 1.90491 1.72239 1.34872 1.38008 1.20451 0.94525 0.94795 1.10251 1.21638 1.01305 0.89191 0.89722 1.19091 0.94761 0.89686 1.12445 1.21626 0.85832 0.85331 0.72320 1.90773 1.16015 1.88571 1.47531 1.86539 1.42670 1.15542 1.82674 1.23223 0.94266 0.79711 1.00992 1.18987 0.94715 0.90109 0.96830 1.21400 0.94181 0.91416 1.51694 0.91678 1.25946 0.96103 1.03020 0.94185 1.70096 1.09560 1.26660 1.50227 0.85283 0.78927 0.78143 0.77996 1.18611 1.20091 1.20114 1.21935 0.92401 1.00411 0.89881 1.21367 1.02094 0.90066 1.02214 1.20835 0.92588 0.97187 0.89120 1.21182 1.00196 0.92834 1.03702 0.86775 0.88273 0.88460 0.82531 0.91961 0.92000 0.97357 0.97378 0.92338 0.83549 0.81537 0.89838 0.89543 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.32 9.63 71.23 0.69 -1.63 16 2 C 0.40 7.18 7.16 28.04 0.20 7.38 16 3 O -0.48 -10.57 14.07 -2.94 -0.04 -10.61 16 4 C -0.20 -3.93 5.86 -20.19 -0.12 -4.05 16 5 C 0.00 -0.01 8.86 22.85 0.20 0.19 16 6 C -0.16 -4.25 5.87 -20.14 -0.12 -4.37 16 7 C 0.50 17.54 7.90 70.34 0.56 18.09 16 8 O -0.54 -20.67 16.13 19.92 0.32 -20.35 16 9 O -0.36 -14.15 9.46 -56.18 -0.53 -14.68 16 10 C 0.09 4.03 5.41 71.98 0.39 4.42 16 11 C 0.03 1.63 5.35 29.85 0.16 1.79 16 12 C -0.55 -30.77 9.11 25.60 0.23 -30.53 16 13 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 14 C 0.01 0.36 5.46 84.66 0.46 0.83 16 15 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 16 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 C -0.03 -0.64 9.61 22.61 0.22 -0.42 16 21 C -0.14 -2.49 9.64 22.19 0.21 -2.27 16 22 C 0.00 0.06 5.93 -19.50 -0.12 -0.06 16 23 C -0.12 -1.89 8.72 71.24 0.62 -1.27 16 24 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 0.98 6.72 -2.39 -0.02 0.96 16 27 H 0.16 3.05 6.11 -2.91 -0.02 3.03 16 28 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.06 2.70 8.14 -2.38 -0.02 2.68 16 30 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 33 H 0.15 3.37 7.60 -2.91 -0.02 3.35 16 34 H 0.17 1.97 8.05 -2.91 -0.02 1.94 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 0.95 8.03 -2.39 -0.02 0.93 16 37 H 0.08 1.50 5.85 -2.39 -0.01 1.49 16 Total: -1.00 -67.79 323.71 6.73 -61.06 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.08 Total: 5.82 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 3.59 Total: -11.90 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.28 Total: -54.53 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.25 Total: -45.64 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.79 6.73 -61.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195052320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.951 kcal (2) G-P(sol) polarization free energy of solvation -67.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds