Wall clock time and date at job start Mon Mar 30 2020 01:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.31008 * 120.00158 * 2 1 4 4 C 1.50704 * 119.99567 * 359.97438 * 3 2 1 5 5 O 1.45200 * 109.46607 * 134.99969 * 4 3 2 6 6 C 1.34235 * 116.99997 * 179.97438 * 5 4 3 7 7 O 1.20825 * 119.99771 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00076 * 180.02562 * 6 5 4 9 9 C 1.50702 * 109.46777 * 180.02562 * 8 6 5 10 10 C 1.38306 * 119.92717 * 269.72436 * 9 8 6 11 11 C 1.38102 * 120.06821 * 179.72862 * 10 9 8 12 12 C 1.38879 * 119.92706 * 0.57068 * 11 10 9 13 13 O 1.35754 * 120.06686 * 179.68680 * 12 11 10 14 14 C 1.34835 * 116.99996 * 174.48634 * 13 12 11 15 15 H 1.07999 * 119.99761 * 5.05477 * 14 13 12 16 16 C 1.38651 * 119.99836 * 185.05388 * 14 13 12 17 17 N 1.31550 * 120.00220 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99695 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46831 * 90.00026 * 18 16 14 20 20 H 1.48496 * 109.46851 * 210.00071 * 18 16 14 21 21 H 1.48490 * 109.47099 * 330.00229 * 18 16 14 22 22 C 1.38882 * 119.86523 * 359.70134 * 12 11 10 23 23 C 1.38104 * 119.92891 * 0.02562 * 22 12 11 24 24 H 1.09000 * 109.47343 * 300.00364 * 1 2 3 25 25 H 1.08998 * 109.47532 * 60.00257 * 1 2 3 26 26 H 1.08996 * 109.47512 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00368 * 180.02562 * 2 1 3 28 28 H 1.07995 * 119.99905 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.46974 * 255.00187 * 4 3 2 30 30 H 1.08999 * 109.47324 * 15.00373 * 4 3 2 31 31 H 1.09000 * 109.47019 * 299.99832 * 8 6 5 32 32 H 1.09001 * 109.47150 * 60.00266 * 8 6 5 33 33 H 1.08000 * 119.96483 * 359.97438 * 10 9 8 34 34 H 1.07994 * 120.03630 * 180.27311 * 11 10 9 35 35 H 0.97004 * 120.00365 * 180.02562 * 17 16 14 36 36 H 1.07992 * 120.03671 * 179.97438 * 22 12 11 37 37 H 1.08003 * 119.96502 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4084 2.4396 -0.0006 5 8 2.0044 3.3430 0.9675 6 6 1.4470 4.5579 1.0911 7 8 0.4924 4.8563 0.4131 8 6 2.0118 5.5494 2.0753 9 6 1.2109 6.8248 2.0191 10 6 1.5815 7.8345 1.1496 11 6 0.8464 9.0022 1.0916 12 6 -0.2590 9.1666 1.9161 13 8 -0.9799 10.3159 1.8660 14 6 -2.1048 10.3657 2.6077 15 1 -2.3528 9.5478 3.2680 16 6 -2.9430 11.4669 2.5227 17 7 -2.6410 12.4628 1.7181 18 14 -4.5018 11.5356 3.5498 19 1 -4.2052 12.1738 4.8575 20 1 -5.5319 12.3299 2.8335 21 1 -5.0073 10.1576 3.7749 22 6 -0.6253 8.1531 2.7921 23 6 0.1106 6.9855 2.8413 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.0470 -0.9353 -0.0004 28 1 3.2419 1.1345 -0.0004 29 1 1.4574 2.8870 -0.9933 30 1 0.3670 2.2580 0.2651 31 1 1.9602 5.1325 3.0811 32 1 3.0507 5.7609 1.8224 33 1 2.4444 7.7080 0.5125 34 1 1.1337 9.7885 0.4094 35 1 -3.2272 13.2334 1.6589 36 1 -1.4842 8.2782 3.4347 37 1 -0.1735 6.1971 3.5226 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255612892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:58 Heat of formation + Delta-G solvation = -76.969338 kcal Electronic energy + Delta-G solvation = -19944.478053 eV Core-core repulsion = 16653.114887 eV Total energy + Delta-G solvation = -3291.363166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41021 -38.97689 -37.19146 -36.35804 -35.32339 -32.51364 -31.51527 -30.17283 -28.90332 -26.98471 -25.68276 -25.01044 -21.99714 -21.64098 -20.14358 -19.00334 -17.99603 -17.61499 -16.99302 -16.76018 -16.12944 -15.36654 -14.63386 -14.58425 -14.36734 -13.97348 -13.71197 -13.59788 -13.49979 -13.13223 -12.72712 -12.69431 -12.47428 -12.12696 -11.90189 -11.54899 -11.28175 -11.26497 -10.89379 -10.78786 -10.73400 -10.62853 -10.43248 -10.27530 -9.43809 -9.33498 -8.83133 -8.17065 -7.20038 -6.45105 -4.03719 1.64038 2.18679 2.23915 2.39943 3.00577 3.13570 3.15284 3.19363 3.97009 4.44319 4.58621 4.70992 4.93588 4.96952 5.00907 5.08324 5.15993 5.23358 5.30065 5.30700 5.39225 5.56763 5.64116 5.69708 5.71657 5.83255 6.20465 6.20915 6.35460 6.40238 6.49248 6.69624 6.90013 7.04514 7.22105 7.34272 7.43766 7.81357 7.94227 7.99991 9.00464 9.70117 10.72832 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.003068 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.066495 B = 9125.169907 C = 9683.535904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C -0.163 4.163 4 C 0.090 3.910 5 O -0.362 6.362 6 C 0.454 3.546 7 O -0.492 6.492 8 C -0.050 4.050 9 C -0.183 4.183 10 C -0.057 4.057 11 C -0.192 4.192 12 C 0.159 3.841 13 O -0.176 6.176 14 C -0.392 4.392 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.233 4.233 23 C -0.053 4.053 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.270 0.730 36 H 0.128 0.872 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -19.916 -0.390 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C -0.181 4.181 4 C 0.016 3.984 5 O -0.280 6.280 6 C 0.296 3.704 7 O -0.377 6.377 8 C -0.087 4.087 9 C -0.184 4.184 10 C -0.075 4.075 11 C -0.211 4.211 12 C 0.105 3.895 13 O -0.079 6.079 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.252 4.252 23 C -0.072 4.072 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.182 -19.393 -0.815 21.064 hybrid contribution -0.873 -0.088 0.353 0.945 sum 7.310 -19.481 -0.461 20.812 Atomic orbital electron populations 1.20981 0.93159 1.02715 1.02489 1.22875 0.96466 0.97698 0.99045 1.22568 1.00414 0.92423 1.02712 1.22031 0.96893 0.87267 0.92169 1.86527 1.58147 1.25397 1.57906 1.24243 0.81931 0.81081 0.83179 1.90706 1.26152 1.77433 1.43399 1.20098 1.00294 0.90722 0.97597 1.18645 1.00672 0.94915 1.04214 1.20429 0.98052 0.92608 0.96407 1.20161 0.97958 0.99391 1.03584 1.19403 0.91345 0.86387 0.92381 1.83979 1.33743 1.29217 1.60968 1.21344 0.97725 1.06068 1.21663 0.89012 1.25298 0.99003 0.94791 0.97421 1.70037 1.37479 1.07081 1.35077 0.85705 0.79832 0.78839 0.79025 1.19855 1.20236 1.19167 1.21109 1.04060 0.95369 1.04694 1.20534 0.93426 0.96171 0.97023 0.91125 0.91282 0.91724 0.86403 0.86162 0.90429 0.90411 0.87821 0.87764 0.87179 0.86398 0.91991 0.85456 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.70 36.00 0.31 -0.66 16 2 C -0.14 -1.06 10.26 -36.03 -0.37 -1.43 16 3 C -0.16 -1.42 9.91 -36.03 -0.36 -1.78 16 4 C 0.09 0.99 5.59 36.01 0.20 1.20 16 5 O -0.36 -4.63 10.20 -39.27 -0.40 -5.03 16 6 C 0.45 6.70 7.95 36.00 0.29 6.98 16 7 O -0.49 -9.13 15.78 -18.75 -0.30 -9.43 16 8 C -0.05 -0.65 5.94 -29.04 -0.17 -0.82 16 9 C -0.18 -3.19 4.38 -104.57 -0.46 -3.65 16 10 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 11 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 12 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 13 O -0.18 -5.10 9.76 0.02 0.00 -5.10 16 14 C -0.39 -11.08 9.49 30.88 0.29 -10.79 16 15 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 18 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 23 C -0.05 -1.00 9.69 -39.61 -0.38 -1.39 16 24 H 0.07 0.54 7.49 -51.93 -0.39 0.15 16 25 H 0.07 0.50 8.01 -51.93 -0.42 0.08 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 28 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 30 H 0.08 0.87 5.97 -51.93 -0.31 0.56 16 31 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 32 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 37 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -32.86 326.54 -6.80 -39.66 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.62 Total: 3.21 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -2.14 Total: -19.18 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.76 Total: -24.72 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.70 Total: -19.55 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.86 -6.80 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255612892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.309 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds