Wall clock time and date at job start Mon Mar 30 2020 01:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.31008 * 120.00158 * 2 1 4 4 C 1.50704 * 119.99567 * 359.97438 * 3 2 1 5 5 O 1.45200 * 109.46607 * 134.99969 * 4 3 2 6 6 C 1.34235 * 116.99997 * 179.97438 * 5 4 3 7 7 O 1.20825 * 119.99771 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00076 * 180.02562 * 6 5 4 9 9 C 1.50702 * 109.46777 * 180.02562 * 8 6 5 10 10 C 1.38306 * 119.92717 * 269.72436 * 9 8 6 11 11 C 1.38102 * 120.06821 * 179.72862 * 10 9 8 12 12 C 1.38879 * 119.92706 * 0.57068 * 11 10 9 13 13 O 1.35754 * 120.06686 * 179.68680 * 12 11 10 14 14 C 1.34835 * 116.99996 * 174.48634 * 13 12 11 15 15 H 1.07999 * 119.99761 * 5.05477 * 14 13 12 16 16 C 1.38651 * 119.99836 * 185.05388 * 14 13 12 17 17 N 1.31550 * 120.00220 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99695 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46831 * 90.00026 * 18 16 14 20 20 H 1.48496 * 109.46851 * 210.00071 * 18 16 14 21 21 H 1.48490 * 109.47099 * 330.00229 * 18 16 14 22 22 C 1.38882 * 119.86523 * 359.70134 * 12 11 10 23 23 C 1.38104 * 119.92891 * 0.02562 * 22 12 11 24 24 H 1.09000 * 109.47343 * 300.00364 * 1 2 3 25 25 H 1.08998 * 109.47532 * 60.00257 * 1 2 3 26 26 H 1.08996 * 109.47512 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00368 * 180.02562 * 2 1 3 28 28 H 1.07995 * 119.99905 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.46974 * 255.00187 * 4 3 2 30 30 H 1.08999 * 109.47324 * 15.00373 * 4 3 2 31 31 H 1.09000 * 109.47019 * 299.99832 * 8 6 5 32 32 H 1.09001 * 109.47150 * 60.00266 * 8 6 5 33 33 H 1.08000 * 119.96483 * 359.97438 * 10 9 8 34 34 H 1.07994 * 120.03630 * 180.27311 * 11 10 9 35 35 H 0.97004 * 120.00365 * 180.02562 * 17 16 14 36 36 H 1.07992 * 120.03671 * 179.97438 * 22 12 11 37 37 H 1.08003 * 119.96502 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4084 2.4396 -0.0006 5 8 2.0044 3.3430 0.9675 6 6 1.4470 4.5579 1.0911 7 8 0.4924 4.8563 0.4131 8 6 2.0118 5.5494 2.0753 9 6 1.2109 6.8248 2.0191 10 6 1.5815 7.8345 1.1496 11 6 0.8464 9.0022 1.0916 12 6 -0.2590 9.1666 1.9161 13 8 -0.9799 10.3159 1.8660 14 6 -2.1048 10.3657 2.6077 15 1 -2.3528 9.5478 3.2680 16 6 -2.9430 11.4669 2.5227 17 7 -2.6410 12.4628 1.7181 18 14 -4.5018 11.5356 3.5498 19 1 -4.2052 12.1738 4.8575 20 1 -5.5319 12.3299 2.8335 21 1 -5.0073 10.1576 3.7749 22 6 -0.6253 8.1531 2.7921 23 6 0.1106 6.9855 2.8413 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.0470 -0.9353 -0.0004 28 1 3.2419 1.1345 -0.0004 29 1 1.4574 2.8870 -0.9933 30 1 0.3670 2.2580 0.2651 31 1 1.9602 5.1325 3.0811 32 1 3.0507 5.7609 1.8224 33 1 2.4444 7.7080 0.5125 34 1 1.1337 9.7885 0.4094 35 1 -3.2272 13.2334 1.6589 36 1 -1.4842 8.2782 3.4347 37 1 -0.1735 6.1971 3.5226 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255612892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:57 Heat of formation + Delta-G solvation = -96.044892 kcal Electronic energy + Delta-G solvation = -19945.305231 eV Core-core repulsion = 16653.114887 eV Total energy + Delta-G solvation = -3292.190344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58601 -40.68163 -38.58829 -37.69450 -36.13749 -34.42578 -33.02444 -31.80885 -29.74249 -28.34820 -27.19513 -26.24465 -23.66608 -23.02722 -21.52221 -19.87498 -19.68415 -18.85279 -18.71224 -17.75330 -17.20408 -16.50665 -16.40935 -16.04991 -15.82013 -15.52827 -15.06975 -14.87184 -14.51714 -14.35526 -14.18976 -13.86057 -13.68290 -13.59636 -12.98125 -12.88002 -12.66850 -12.51900 -12.35842 -12.29264 -12.13357 -12.02396 -11.64968 -11.48812 -11.19605 -10.80290 -10.08730 -9.79105 -8.96056 -8.48464 -6.16846 0.55858 0.59367 1.02602 1.26236 1.34042 1.43368 1.51978 1.98626 2.17067 2.83268 3.15765 3.49711 3.73297 3.83167 4.01397 4.04006 4.08750 4.17220 4.27443 4.41190 4.42003 4.43936 4.56826 4.68327 4.72917 4.78040 4.98622 5.04845 5.09951 5.13195 5.27140 5.45782 5.53805 5.61766 5.69558 5.72522 5.76108 6.01457 6.19759 6.82127 6.96052 7.76342 8.74837 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.003068 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.066495 B = 9125.169907 C = 9683.535904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C -0.179 4.179 4 C 0.085 3.915 5 O -0.354 6.354 6 C 0.460 3.540 7 O -0.539 6.539 8 C -0.048 4.048 9 C -0.159 4.159 10 C -0.053 4.053 11 C -0.206 4.206 12 C 0.116 3.884 13 O -0.231 6.231 14 C -0.415 4.415 15 H 0.101 0.899 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.020 2.980 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.254 1.254 22 C -0.245 4.245 23 C -0.056 4.056 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.132 0.868 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.114 0.886 35 H 0.273 0.727 36 H 0.119 0.881 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.983 -23.503 0.709 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C -0.197 4.197 4 C 0.012 3.988 5 O -0.271 6.271 6 C 0.305 3.695 7 O -0.428 6.428 8 C -0.085 4.085 9 C -0.160 4.160 10 C -0.071 4.071 11 C -0.226 4.226 12 C 0.065 3.935 13 O -0.138 6.138 14 C -0.491 4.491 15 H 0.119 0.881 16 C -0.221 4.221 17 N -0.559 5.559 18 Si 0.839 3.161 19 H -0.185 1.185 20 H -0.196 1.196 21 H -0.178 1.178 22 C -0.264 4.264 23 C -0.074 4.074 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.159 0.841 28 H 0.150 0.850 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.647 -23.049 0.295 24.988 hybrid contribution -1.045 0.663 -0.056 1.239 sum 8.602 -22.387 0.239 23.984 Atomic orbital electron populations 1.21045 0.93281 1.03653 1.01940 1.23148 0.96570 0.98228 0.96769 1.22555 1.00914 0.91458 1.04785 1.22196 0.97146 0.87998 0.91444 1.86516 1.57709 1.24774 1.58106 1.24429 0.80992 0.81648 0.82470 1.90718 1.28300 1.78355 1.45404 1.20242 1.01059 0.87935 0.99236 1.19204 0.99318 0.96221 1.01249 1.20912 0.98456 0.91194 0.96543 1.20449 0.97818 1.00941 1.03365 1.19974 0.92441 0.86628 0.94425 1.83943 1.35061 1.31754 1.63044 1.21836 0.98283 1.06830 1.22162 0.88136 1.26616 1.02661 0.94018 0.98779 1.70183 1.39513 1.08244 1.37945 0.84575 0.74791 0.79454 0.77307 1.18509 1.19561 1.17805 1.21235 1.04556 0.96251 1.04335 1.20964 0.93165 0.95524 0.97705 0.91855 0.91678 0.90103 0.84097 0.85004 0.91037 0.90933 0.84269 0.83958 0.83222 0.86771 0.91789 0.86284 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.70 71.23 0.62 -1.10 16 2 C -0.13 -1.54 10.26 25.63 0.26 -1.27 16 3 C -0.18 -2.65 9.91 25.64 0.25 -2.39 16 4 C 0.09 1.72 5.59 71.24 0.40 2.12 16 5 O -0.35 -7.90 10.20 -51.47 -0.53 -8.42 16 6 C 0.46 11.98 7.95 71.23 0.57 12.55 16 7 O -0.54 -18.97 15.78 21.97 0.35 -18.62 16 8 C -0.05 -1.00 5.94 29.10 0.17 -0.82 16 9 C -0.16 -4.99 4.38 -19.83 -0.09 -5.08 16 10 C -0.05 -1.83 9.69 22.25 0.22 -1.61 16 11 C -0.21 -9.13 9.99 22.39 0.22 -8.90 16 12 C 0.12 5.98 6.65 22.58 0.15 6.13 16 13 O -0.23 -14.34 9.76 -22.84 -0.22 -14.57 16 14 C -0.42 -24.80 9.49 67.92 0.64 -24.15 16 15 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16 16 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 17 N -0.92 -57.55 13.67 21.61 0.30 -57.25 16 18 Si 1.02 43.66 29.55 68.60 2.03 45.69 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 22 C -0.24 -11.04 9.17 22.39 0.21 -10.84 16 23 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 24 H 0.06 0.87 7.49 -2.39 -0.02 0.85 16 25 H 0.06 0.84 8.01 -2.39 -0.02 0.83 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 28 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 29 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 30 H 0.07 1.53 5.97 -2.39 -0.01 1.52 16 31 H 0.14 2.07 8.08 -2.39 -0.02 2.05 16 32 H 0.14 2.04 8.08 -2.39 -0.02 2.02 16 33 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 37 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -77.55 326.54 7.30 -70.25 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 1.07 Total: 20.94 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 4.31 Total: -38.02 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.30 Total: -57.25 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.40 Total: -41.61 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -77.55 7.30 -70.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255612892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.799 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds