Wall clock time and date at job start Mon Mar 30 2020 01:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47271 * 2 1 4 4 C 1.50701 * 109.47344 * 119.99925 * 2 1 3 5 5 H 1.08008 * 119.99674 * 119.99790 * 4 2 1 6 6 C 1.37872 * 119.99787 * 300.00333 * 4 2 1 7 7 N 1.31513 * 120.00365 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99747 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.46969 * 59.99781 * 8 6 4 10 10 H 1.48500 * 109.46650 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46679 * 299.99738 * 8 6 4 12 12 N 1.46502 * 109.47330 * 239.99966 * 2 1 3 13 13 C 1.34783 * 119.99811 * 84.99865 * 12 2 1 14 14 O 1.21646 * 119.99980 * 359.97438 * 13 12 2 15 15 C 1.47058 * 119.99652 * 180.02562 * 13 12 2 16 16 C 1.35879 * 125.42557 * 179.97438 * 15 13 12 17 17 C 1.41581 * 107.73723 * 179.97438 * 16 15 13 18 18 C 1.40132 * 133.34840 * 180.25634 * 17 16 15 19 19 C 1.36610 * 119.81141 * 180.21788 * 18 17 16 20 20 F 1.35104 * 119.71582 * 179.77316 * 19 18 17 21 21 C 1.39123 * 120.56227 * 359.50127 * 19 18 17 22 22 C 1.37662 * 120.63085 * 0.25094 * 21 19 18 23 23 C 1.39221 * 119.83654 * 0.02562 * 22 21 19 24 24 N 1.37576 * 133.14683 * 179.97438 * 23 22 21 25 25 H 0.96994 * 125.61245 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46841 * 299.99876 * 1 2 3 28 28 H 1.09004 * 109.46856 * 59.99977 * 1 2 3 29 29 H 0.97003 * 120.00124 * 180.02562 * 7 6 4 30 30 H 0.96995 * 120.00260 * 265.00595 * 12 2 1 31 31 H 1.07993 * 126.13300 * 0.04992 * 16 15 13 32 32 H 1.08003 * 120.09250 * 359.97438 * 18 17 16 33 33 H 1.08004 * 119.68382 * 180.27399 * 21 19 18 34 34 H 1.07995 * 120.08339 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1209 4.0081 10 1 1.8269 -0.4199 5.2204 11 1 1.8258 -2.5202 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8573 1.1620 -2.4119 15 6 2.6368 -0.7116 -3.5580 16 6 2.8078 -0.1439 -4.7806 17 6 3.2930 -1.1446 -5.6568 18 6 3.6499 -1.1461 -7.0119 19 6 4.0923 -2.2988 -7.5965 20 9 4.4315 -2.2991 -8.9042 21 6 4.2018 -3.4710 -6.8552 22 6 3.8617 -3.4918 -5.5215 23 6 3.4030 -2.3307 -4.9054 24 7 2.9964 -2.0438 -3.6228 25 1 2.9675 -2.6731 -2.8853 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7095 1.1618 3.4844 30 1 2.2490 -1.6317 -1.1527 31 1 2.6104 0.8862 -5.0376 32 1 3.5718 -0.2393 -7.5934 33 1 4.5574 -4.3732 -7.3307 34 1 3.9498 -4.4068 -4.9546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259566124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:21 Heat of formation + Delta-G solvation = -30.654403 kcal Electronic energy + Delta-G solvation = -20045.341593 eV Core-core repulsion = 16664.819239 eV Total energy + Delta-G solvation = -3380.522354 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.89603 -41.60589 -38.84394 -36.59275 -35.01506 -32.65333 -32.26975 -29.83505 -29.16724 -28.44348 -25.37806 -24.20837 -22.34928 -21.75883 -20.58342 -19.66296 -18.69568 -17.50310 -17.13403 -16.16173 -15.71177 -15.68635 -15.34849 -14.90900 -14.56540 -14.21649 -13.84319 -13.75496 -13.43512 -13.26418 -12.97688 -12.65504 -12.52718 -11.84466 -11.38373 -11.21373 -11.12058 -11.04649 -10.87425 -10.45368 -10.33874 -10.09089 -9.50822 -9.18894 -8.67685 -8.34180 -8.12619 -7.90107 -6.22363 -4.33027 0.60598 1.26201 2.14362 2.83124 3.18687 3.24575 3.25172 3.53464 3.74813 3.76360 4.20478 4.28300 4.42592 4.73309 5.00420 5.06882 5.10312 5.13488 5.35925 5.52804 5.76249 5.88104 6.00754 6.07376 6.42513 6.54507 6.70368 6.82002 6.85939 7.00984 7.22211 7.24525 7.41937 7.56064 7.77615 8.02127 8.41478 8.60856 8.83609 9.34461 10.83538 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.037419 B = 0.003458 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.106636 B = 8095.268419 C = 8637.881930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.564 3.436 14 O -0.530 6.530 15 C 0.048 3.952 16 C -0.127 4.127 17 C -0.089 4.089 18 C -0.100 4.100 19 C 0.066 3.934 20 F -0.146 7.146 21 C -0.130 4.130 22 C -0.096 4.096 23 C 0.095 3.905 24 N -0.572 5.572 25 H 0.421 0.579 26 H 0.027 0.973 27 H 0.093 0.907 28 H 0.017 0.983 29 H 0.267 0.733 30 H 0.384 0.616 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 -8.894 -15.084 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.348 5.348 13 C 0.348 3.652 14 O -0.407 6.407 15 C -0.063 4.063 16 C -0.153 4.153 17 C -0.095 4.095 18 C -0.119 4.119 19 C 0.046 3.954 20 F -0.124 7.124 21 C -0.150 4.150 22 C -0.117 4.117 23 C -0.016 4.016 24 N -0.177 5.177 25 H 0.260 0.740 26 H 0.046 0.954 27 H 0.111 0.889 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.216 0.784 31 H 0.176 0.824 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.580 -7.940 -14.789 17.399 hybrid contribution 0.464 -1.308 1.028 1.728 sum 5.045 -9.249 -13.760 17.330 Atomic orbital electron populations 1.22096 0.98103 0.99285 1.01210 1.18850 0.91245 0.94112 0.79447 0.92902 1.21129 1.32954 1.13445 0.90265 0.92147 1.24879 0.94672 0.94914 0.99084 1.69880 1.35474 1.22234 1.24221 0.86480 0.79194 0.79558 0.81712 1.20119 1.21007 1.20132 1.46537 1.64482 1.13221 1.10584 1.17246 0.79274 0.86661 0.82007 1.90824 1.51032 1.14643 1.84215 1.20809 1.05136 0.83282 0.97047 1.20850 1.04415 0.99765 0.90298 1.17900 1.04836 0.93526 0.93206 1.20272 1.00258 0.97714 0.93693 1.16994 1.04729 0.94977 0.78681 1.91479 1.90550 1.97272 1.33138 1.20765 1.03037 0.97506 0.93688 1.19894 1.01779 0.95889 0.94101 1.18344 1.02407 0.95880 0.84927 1.42062 1.56163 1.09849 1.09605 0.74001 0.95388 0.88871 0.96424 0.92330 0.78386 0.82422 0.84544 0.84473 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.46 2.56 -69.08 -0.18 6.29 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 5 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.11 11.32 55.43 0.63 -23.49 16 8 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 N -0.70 -13.82 5.07 -56.12 -0.28 -14.10 16 13 C 0.56 11.01 7.76 -12.68 -0.10 10.92 16 14 O -0.53 -12.33 16.50 5.24 0.09 -12.24 16 15 C 0.05 0.75 6.97 -82.29 -0.57 0.17 16 16 C -0.13 -1.86 10.53 -39.15 -0.41 -2.27 16 17 C -0.09 -1.17 6.16 -106.93 -0.66 -1.83 16 18 C -0.10 -1.16 10.03 -39.46 -0.40 -1.55 16 19 C 0.07 0.74 7.24 -39.84 -0.29 0.45 16 20 F -0.15 -1.67 17.25 2.25 0.04 -1.63 16 21 C -0.13 -1.24 9.99 -39.46 -0.39 -1.63 16 22 C -0.10 -0.92 10.07 -39.43 -0.40 -1.32 16 23 C 0.09 1.14 7.25 -83.94 -0.61 0.53 16 24 N -0.57 -7.04 6.08 -7.34 -0.04 -7.08 16 25 H 0.42 4.09 8.12 -40.82 -0.33 3.76 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.38 6.31 7.59 -40.82 -0.31 6.00 16 31 H 0.16 2.20 8.06 -52.49 -0.42 1.77 16 32 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -29.92 302.85 -7.52 -37.44 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -3.43 Total: 7.41 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -4.05 Total: -5.82 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.30 Total: -44.67 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.92 -7.52 -37.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259566124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.781 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds