Wall clock time and date at job start Mon Mar 30 2020 01:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47271 * 2 1 4 4 C 1.50701 * 109.47344 * 119.99925 * 2 1 3 5 5 H 1.08008 * 119.99674 * 119.99790 * 4 2 1 6 6 C 1.37872 * 119.99787 * 300.00333 * 4 2 1 7 7 N 1.31513 * 120.00365 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99747 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.46969 * 59.99781 * 8 6 4 10 10 H 1.48500 * 109.46650 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46679 * 299.99738 * 8 6 4 12 12 N 1.46502 * 109.47330 * 239.99966 * 2 1 3 13 13 C 1.34783 * 119.99811 * 84.99865 * 12 2 1 14 14 O 1.21646 * 119.99980 * 359.97438 * 13 12 2 15 15 C 1.47058 * 119.99652 * 180.02562 * 13 12 2 16 16 C 1.35879 * 125.42557 * 179.97438 * 15 13 12 17 17 C 1.41581 * 107.73723 * 179.97438 * 16 15 13 18 18 C 1.40132 * 133.34840 * 180.25634 * 17 16 15 19 19 C 1.36610 * 119.81141 * 180.21788 * 18 17 16 20 20 F 1.35104 * 119.71582 * 179.77316 * 19 18 17 21 21 C 1.39123 * 120.56227 * 359.50127 * 19 18 17 22 22 C 1.37662 * 120.63085 * 0.25094 * 21 19 18 23 23 C 1.39221 * 119.83654 * 0.02562 * 22 21 19 24 24 N 1.37576 * 133.14683 * 179.97438 * 23 22 21 25 25 H 0.96994 * 125.61245 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46841 * 299.99876 * 1 2 3 28 28 H 1.09004 * 109.46856 * 59.99977 * 1 2 3 29 29 H 0.97003 * 120.00124 * 180.02562 * 7 6 4 30 30 H 0.96995 * 120.00260 * 265.00595 * 12 2 1 31 31 H 1.07993 * 126.13300 * 0.04992 * 16 15 13 32 32 H 1.08003 * 120.09250 * 359.97438 * 18 17 16 33 33 H 1.08004 * 119.68382 * 180.27399 * 21 19 18 34 34 H 1.07995 * 120.08339 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1209 4.0081 10 1 1.8269 -0.4199 5.2204 11 1 1.8258 -2.5202 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8573 1.1620 -2.4119 15 6 2.6368 -0.7116 -3.5580 16 6 2.8078 -0.1439 -4.7806 17 6 3.2930 -1.1446 -5.6568 18 6 3.6499 -1.1461 -7.0119 19 6 4.0923 -2.2988 -7.5965 20 9 4.4315 -2.2991 -8.9042 21 6 4.2018 -3.4710 -6.8552 22 6 3.8617 -3.4918 -5.5215 23 6 3.4030 -2.3307 -4.9054 24 7 2.9964 -2.0438 -3.6228 25 1 2.9675 -2.6731 -2.8853 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7095 1.1618 3.4844 30 1 2.2490 -1.6317 -1.1527 31 1 2.6104 0.8862 -5.0376 32 1 3.5718 -0.2393 -7.5934 33 1 4.5574 -4.3732 -7.3307 34 1 3.9498 -4.4068 -4.9546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259566124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:21 Heat of formation + Delta-G solvation = -49.552339 kcal Electronic energy + Delta-G solvation = -20046.161069 eV Core-core repulsion = 16664.819239 eV Total energy + Delta-G solvation = -3381.341830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.76958 -42.64353 -40.39504 -37.55809 -36.84057 -34.44107 -33.29543 -31.42989 -30.12302 -29.74566 -27.37782 -25.45262 -23.34976 -22.99881 -22.00924 -21.17576 -19.97241 -18.54982 -18.34076 -17.63928 -17.17924 -16.76250 -16.60790 -16.23492 -16.08423 -15.38069 -15.07548 -14.90869 -14.72958 -14.44140 -14.20090 -14.08099 -13.74037 -13.56869 -13.04762 -12.91775 -12.77417 -12.31741 -12.25858 -12.18709 -11.95694 -11.20447 -11.14555 -11.03783 -10.62984 -9.97112 -9.22693 -8.88718 -8.20154 -6.38540 -0.37784 0.37780 1.00936 1.45122 1.46858 1.54764 1.81183 2.23077 2.29903 2.46879 2.68042 3.10806 3.32426 3.59694 3.77352 3.98052 4.10518 4.30468 4.33149 4.60466 4.71447 4.84823 4.88167 4.98440 5.03758 5.18038 5.20417 5.34416 5.39050 5.50454 5.53435 5.63734 5.83137 5.96141 6.04175 6.36330 6.65937 6.77539 7.19984 7.37048 8.86053 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.037419 B = 0.003458 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.106636 B = 8095.268419 C = 8637.881930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.004 0.996 4 C -0.551 4.551 5 H 0.076 0.924 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.695 5.695 13 C 0.567 3.433 14 O -0.578 6.578 15 C 0.025 3.975 16 C -0.123 4.123 17 C -0.113 4.113 18 C -0.106 4.106 19 C 0.059 3.941 20 F -0.148 7.148 21 C -0.117 4.117 22 C -0.090 4.090 23 C 0.097 3.903 24 N -0.560 5.560 25 H 0.433 0.567 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.014 0.986 29 H 0.267 0.733 30 H 0.402 0.598 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.169 0.831 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 -12.144 -15.899 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.589 4.589 5 H 0.094 0.906 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.343 5.343 13 C 0.353 3.647 14 O -0.458 6.458 15 C -0.086 4.086 16 C -0.150 4.150 17 C -0.117 4.117 18 C -0.126 4.126 19 C 0.039 3.961 20 F -0.127 7.127 21 C -0.137 4.137 22 C -0.110 4.110 23 C -0.014 4.014 24 N -0.165 5.165 25 H 0.274 0.726 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.237 0.763 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.187 0.813 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.867 -11.248 -15.617 20.121 hybrid contribution 0.118 -0.317 1.095 1.146 sum 5.985 -11.566 -14.522 19.506 Atomic orbital electron populations 1.21924 0.97974 0.99701 0.99872 1.18448 0.91333 0.92160 0.81285 0.97765 1.21486 1.32987 1.13820 0.90613 0.90596 1.25792 0.94759 0.95536 1.02331 1.70037 1.36733 1.23792 1.24833 0.85379 0.78627 0.78735 0.77488 1.19585 1.21303 1.18718 1.46187 1.64583 1.13961 1.09566 1.17654 0.78093 0.86179 0.82727 1.90789 1.53043 1.16839 1.85122 1.20036 1.08191 0.84962 0.95426 1.20980 1.03414 1.00111 0.90518 1.17949 1.06261 0.93608 0.93931 1.20396 1.00219 0.98674 0.93284 1.17206 1.04643 0.95480 0.78729 1.91479 1.90547 1.97303 1.33362 1.21164 1.01133 0.97882 0.93480 1.20275 1.00408 0.96132 0.94212 1.18663 1.01859 0.96464 0.84389 1.41877 1.55660 1.08633 1.10337 0.72581 0.93894 0.91189 0.96733 0.92421 0.76252 0.82830 0.83672 0.81349 0.81451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.71 9.26 71.98 0.67 -6.04 16 2 C 0.27 13.61 2.56 44.24 0.11 13.72 16 3 H 0.00 0.26 7.58 -2.39 -0.02 0.25 16 4 C -0.55 -28.05 8.73 25.60 0.22 -27.83 16 5 H 0.08 3.54 7.74 -2.91 -0.02 3.51 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -51.32 11.32 21.45 0.24 -51.08 16 8 Si 0.97 40.53 29.54 68.60 2.03 42.56 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 N -0.69 -27.69 5.07 -449.71 -2.28 -29.97 16 13 C 0.57 22.77 7.76 86.56 0.67 23.44 16 14 O -0.58 -28.31 16.50 -4.18 -0.07 -28.38 16 15 C 0.02 0.77 6.97 39.92 0.28 1.04 16 16 C -0.12 -3.62 10.53 22.55 0.24 -3.39 16 17 C -0.11 -2.81 6.16 -21.36 -0.13 -2.94 16 18 C -0.11 -2.29 10.03 22.35 0.22 -2.07 16 19 C 0.06 1.16 7.24 22.10 0.16 1.32 16 20 F -0.15 -3.03 17.25 44.97 0.78 -2.26 16 21 C -0.12 -1.73 9.99 22.35 0.22 -1.51 16 22 C -0.09 -1.35 10.07 22.37 0.23 -1.12 16 23 C 0.10 2.09 7.25 39.11 0.28 2.37 16 24 N -0.56 -12.76 6.08 -177.14 -1.08 -13.84 16 25 H 0.43 7.39 8.12 -92.71 -0.75 6.64 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 27 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 28 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.40 12.88 7.59 -92.71 -0.70 12.17 16 31 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -66.52 302.85 2.95 -63.57 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -0.29 Total: 21.08 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 3.62 Total: -1.69 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -3.11 Total: -94.89 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.07 Total: -28.38 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -66.52 2.95 -63.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259566124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.017 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds