Wall clock time and date at job start Mon Mar 30 2020 01:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37090 * 119.99467 * 2 1 4 4 H 1.08003 * 119.99978 * 142.83028 * 3 2 1 5 5 C 1.38952 * 120.00351 * 322.82777 * 3 2 1 6 6 N 1.31420 * 120.00017 * 158.40808 * 5 3 2 7 7 Si 1.86791 * 120.00114 * 338.40912 * 5 3 2 8 8 H 1.48507 * 109.47028 * 95.71811 * 7 5 3 9 9 H 1.48500 * 109.47595 * 215.71957 * 7 5 3 10 10 H 1.48496 * 109.47126 * 335.72170 * 7 5 3 11 11 C 1.34772 * 120.00147 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00075 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00228 * 359.97438 * 11 2 1 14 14 C 1.50698 * 109.47292 * 179.97438 * 13 11 2 15 15 C 1.34241 * 126.49584 * 265.02962 * 14 13 11 16 16 N 1.36804 * 109.92837 * 179.97438 * 15 14 13 17 17 H 0.96996 * 125.07302 * 180.02562 * 16 15 14 18 18 C 1.37783 * 109.85351 * 359.97438 * 16 15 14 19 19 C 1.40621 * 107.16099 * 359.74674 * 18 16 15 20 20 C 1.39662 * 119.93957 * 179.66935 * 19 18 16 21 21 C 1.36643 * 119.80803 * 0.59766 * 20 19 18 22 22 C 1.38797 * 120.54674 * 359.67624 * 21 20 19 23 23 C 1.37982 * 120.63370 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.13194 * 179.97438 * 23 22 21 25 25 H 1.09008 * 109.46627 * 265.13200 * 1 2 3 26 26 H 1.08995 * 109.47342 * 25.12860 * 1 2 3 27 27 H 1.08993 * 109.46975 * 145.13615 * 1 2 3 28 28 H 0.96998 * 119.99866 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.47049 * 300.00924 * 13 11 2 30 30 H 1.09001 * 109.46734 * 60.00132 * 13 11 2 31 31 H 1.07991 * 125.03475 * 359.93797 * 15 14 13 32 32 H 1.08001 * 120.10139 * 180.27841 * 20 19 18 33 33 H 1.07997 * 119.72565 * 179.70014 * 21 20 19 34 34 H 1.08004 * 119.68236 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6673 2.2684 -0.7271 6 7 2.0431 3.4891 -0.4174 7 14 0.4839 1.9868 -2.1445 8 1 -0.9114 2.1585 -1.6660 9 1 0.7614 2.9684 -3.2237 10 1 0.6607 0.6095 -2.6707 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 6 2.3648 -3.6177 -0.0018 15 6 2.8118 -4.2848 -1.0775 16 7 3.6903 -5.2593 -0.6901 17 1 4.1449 -5.8707 -1.2904 18 6 3.8341 -5.2419 0.6801 19 6 3.0151 -4.2091 1.1701 20 6 2.9536 -3.9601 2.5430 21 6 3.6998 -4.7142 3.4041 22 6 4.5147 -5.7313 2.9267 23 6 4.5862 -5.9989 1.5750 24 9 5.3831 -6.9910 1.1213 25 1 -0.3633 -0.0872 1.0241 26 1 -0.3634 0.9303 -0.4364 27 1 -0.3633 -0.8432 -0.5874 28 1 1.7062 4.2437 -0.9252 29 1 0.7591 -2.5302 0.8896 30 1 0.7586 -2.5298 -0.8903 31 1 2.5205 -4.0826 -2.0976 32 1 2.3220 -3.1705 2.9225 33 1 3.6550 -4.5173 4.4651 34 1 5.0989 -6.3184 3.6199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259567597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:10 Heat of formation + Delta-G solvation = -5.690771 kcal Electronic energy + Delta-G solvation = -20708.198716 eV Core-core repulsion = 17328.758867 eV Total energy + Delta-G solvation = -3379.439849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.82239 -41.11842 -38.51697 -36.78068 -34.75775 -32.66842 -31.92008 -29.72215 -29.31510 -27.31712 -26.30490 -24.31662 -22.76482 -22.06434 -20.03006 -18.74158 -17.79775 -17.01089 -16.86634 -16.06878 -15.88733 -15.68281 -15.46348 -15.25702 -14.69432 -14.38347 -13.91964 -13.47144 -13.24138 -12.79595 -12.65464 -12.37280 -12.22702 -12.17195 -11.69354 -11.64529 -11.47392 -11.35389 -10.97684 -10.71241 -10.33651 -9.90008 -9.35883 -9.03008 -8.43908 -8.21850 -7.68427 -7.45210 -6.35748 -3.92023 1.07339 1.59108 2.74190 3.04125 3.12001 3.22903 3.26463 3.81379 3.86087 4.17205 4.29416 4.60825 4.75185 4.94546 4.97412 5.05567 5.26433 5.37868 5.51928 5.67981 5.71987 5.81541 5.87434 5.95405 6.00163 6.15942 6.21772 6.31677 6.38330 6.61538 6.75643 6.85090 7.18136 7.54017 7.59837 8.33776 8.57533 9.03063 9.36919 9.85073 10.76827 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.033045 B = 0.004465 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.131514 B = 6269.670879 C = 6552.175763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.476 5.476 3 C -0.313 4.313 4 H 0.104 0.896 5 C 0.057 3.943 6 N -0.867 5.867 7 Si 0.881 3.119 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.266 1.266 11 C 0.465 3.535 12 O -0.555 6.555 13 C -0.067 4.067 14 C -0.130 4.130 15 C 0.061 3.939 16 N -0.589 5.589 17 H 0.416 0.584 18 C 0.064 3.936 19 C -0.062 4.062 20 C -0.068 4.068 21 C -0.128 4.128 22 C -0.136 4.136 23 C 0.078 3.922 24 F -0.149 7.149 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.273 0.727 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 -17.697 1.892 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.199 5.199 3 C -0.441 4.441 4 H 0.121 0.879 5 C -0.148 4.148 6 N -0.504 5.504 7 Si 0.709 3.291 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.190 1.190 11 C 0.253 3.747 12 O -0.435 6.435 13 C -0.108 4.108 14 C -0.137 4.137 15 C -0.065 4.065 16 N -0.192 5.192 17 H 0.253 0.747 18 C -0.044 4.044 19 C -0.068 4.068 20 C -0.086 4.086 21 C -0.147 4.147 22 C -0.156 4.156 23 C 0.057 3.943 24 F -0.128 7.128 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.189 0.811 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.436 -17.572 1.722 17.824 hybrid contribution -0.299 -0.285 -1.258 1.324 sum -2.735 -17.858 0.464 18.072 Atomic orbital electron populations 1.21990 0.83568 1.01461 1.00946 1.43703 1.03911 1.05717 1.66594 1.19050 1.10052 0.85512 1.29443 0.87851 1.25375 0.97517 0.94799 0.97154 1.69765 1.44137 0.98071 1.38444 0.86911 0.80209 0.78844 0.83143 1.20344 1.21629 1.18997 1.20247 0.88290 0.84395 0.81756 1.90576 1.13843 1.86837 1.52252 1.20039 0.96377 0.90904 1.03443 1.19724 1.03639 0.99580 0.90777 1.21584 0.94195 0.91488 0.99249 1.41549 1.40577 1.32222 1.04848 0.74714 1.18119 1.02019 1.00181 0.84122 1.18903 0.98485 0.95823 0.93544 1.20390 0.98740 0.98561 0.90929 1.20413 0.98072 0.96341 0.99911 1.20739 1.02096 1.00576 0.92213 1.16642 0.95829 0.90304 0.91572 1.91437 1.72131 1.59465 1.89754 0.93048 0.91761 0.92751 0.91702 0.89291 0.89324 0.81094 0.85416 0.85197 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 8.78 59.85 0.53 1.74 16 2 N -0.48 -11.40 2.59 -122.19 -0.32 -11.72 16 3 C -0.31 -8.93 9.37 -14.94 -0.14 -9.07 16 4 H 0.10 3.34 7.90 -52.48 -0.41 2.92 16 5 C 0.06 1.57 5.29 -17.46 -0.09 1.48 16 6 N -0.87 -25.26 13.96 55.50 0.77 -24.48 16 7 Si 0.88 20.39 24.96 -169.99 -4.24 16.15 16 8 H -0.28 -5.91 6.69 56.52 0.38 -5.53 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 C 0.47 10.63 7.62 -10.99 -0.08 10.55 16 12 O -0.55 -15.10 15.90 5.55 0.09 -15.01 16 13 C -0.07 -1.10 4.85 -29.03 -0.14 -1.24 16 14 C -0.13 -2.14 4.81 -102.71 -0.49 -2.64 16 15 C 0.06 0.85 11.73 -16.74 -0.20 0.66 16 16 N -0.59 -7.84 6.07 -10.61 -0.06 -7.90 16 17 H 0.42 4.19 8.96 -40.82 -0.37 3.83 16 18 C 0.06 0.98 7.26 -83.91 -0.61 0.37 16 19 C -0.06 -1.03 6.35 -105.14 -0.67 -1.70 16 20 C -0.07 -1.01 10.05 -39.63 -0.40 -1.41 16 21 C -0.13 -1.62 9.97 -39.95 -0.40 -2.02 16 22 C -0.14 -1.72 9.99 -39.47 -0.39 -2.12 16 23 C 0.08 1.12 7.32 -39.29 -0.29 0.83 16 24 F -0.15 -2.06 17.27 2.25 0.04 -2.02 16 25 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.06 1.31 3.42 -51.93 -0.18 1.13 16 27 H 0.05 0.83 6.64 -51.93 -0.34 0.49 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.09 1.28 8.11 -51.93 -0.42 0.85 16 30 H 0.09 1.23 7.41 -51.93 -0.38 0.85 16 31 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 296.19 15.07 4.46 4.46 Total: -1.00 -34.53 296.19 -6.02 -40.54 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.38 Total: 4.54 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.38 Total: -4.56 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.39 Total: -44.10 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.09 Total: -15.01 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.24 Total: 16.15 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.53 -6.02 -40.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259567597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.852 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds