Wall clock time and date at job start Mon Mar 30 2020 01:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37090 * 119.99467 * 2 1 4 4 H 1.08003 * 119.99978 * 142.83028 * 3 2 1 5 5 C 1.38952 * 120.00351 * 322.82777 * 3 2 1 6 6 N 1.31420 * 120.00017 * 158.40808 * 5 3 2 7 7 Si 1.86791 * 120.00114 * 338.40912 * 5 3 2 8 8 H 1.48507 * 109.47028 * 95.71811 * 7 5 3 9 9 H 1.48500 * 109.47595 * 215.71957 * 7 5 3 10 10 H 1.48496 * 109.47126 * 335.72170 * 7 5 3 11 11 C 1.34772 * 120.00147 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00075 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00228 * 359.97438 * 11 2 1 14 14 C 1.50698 * 109.47292 * 179.97438 * 13 11 2 15 15 C 1.34241 * 126.49584 * 265.02962 * 14 13 11 16 16 N 1.36804 * 109.92837 * 179.97438 * 15 14 13 17 17 H 0.96996 * 125.07302 * 180.02562 * 16 15 14 18 18 C 1.37783 * 109.85351 * 359.97438 * 16 15 14 19 19 C 1.40621 * 107.16099 * 359.74674 * 18 16 15 20 20 C 1.39662 * 119.93957 * 179.66935 * 19 18 16 21 21 C 1.36643 * 119.80803 * 0.59766 * 20 19 18 22 22 C 1.38797 * 120.54674 * 359.67624 * 21 20 19 23 23 C 1.37982 * 120.63370 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.13194 * 179.97438 * 23 22 21 25 25 H 1.09008 * 109.46627 * 265.13200 * 1 2 3 26 26 H 1.08995 * 109.47342 * 25.12860 * 1 2 3 27 27 H 1.08993 * 109.46975 * 145.13615 * 1 2 3 28 28 H 0.96998 * 119.99866 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.47049 * 300.00924 * 13 11 2 30 30 H 1.09001 * 109.46734 * 60.00132 * 13 11 2 31 31 H 1.07991 * 125.03475 * 359.93797 * 15 14 13 32 32 H 1.08001 * 120.10139 * 180.27841 * 20 19 18 33 33 H 1.07997 * 119.72565 * 179.70014 * 21 20 19 34 34 H 1.08004 * 119.68236 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6673 2.2684 -0.7271 6 7 2.0431 3.4891 -0.4174 7 14 0.4839 1.9868 -2.1445 8 1 -0.9114 2.1585 -1.6660 9 1 0.7614 2.9684 -3.2237 10 1 0.6607 0.6095 -2.6707 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 6 2.3648 -3.6177 -0.0018 15 6 2.8118 -4.2848 -1.0775 16 7 3.6903 -5.2593 -0.6901 17 1 4.1449 -5.8707 -1.2904 18 6 3.8341 -5.2419 0.6801 19 6 3.0151 -4.2091 1.1701 20 6 2.9536 -3.9601 2.5430 21 6 3.6998 -4.7142 3.4041 22 6 4.5147 -5.7313 2.9267 23 6 4.5862 -5.9989 1.5750 24 9 5.3831 -6.9910 1.1213 25 1 -0.3633 -0.0872 1.0241 26 1 -0.3634 0.9303 -0.4364 27 1 -0.3633 -0.8432 -0.5874 28 1 1.7062 4.2437 -0.9252 29 1 0.7591 -2.5302 0.8896 30 1 0.7586 -2.5298 -0.8903 31 1 2.5205 -4.0826 -2.0976 32 1 2.3220 -3.1705 2.9225 33 1 3.6550 -4.5173 4.4651 34 1 5.0989 -6.3184 3.6199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259567597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:10 Heat of formation + Delta-G solvation = -29.290761 kcal Electronic energy + Delta-G solvation = -20709.222089 eV Core-core repulsion = 17328.758867 eV Total energy + Delta-G solvation = -3380.463222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.89447 -42.20030 -40.27554 -37.81841 -36.62790 -34.21451 -33.66910 -30.88550 -30.36925 -28.73454 -27.86969 -26.14261 -23.82373 -23.11644 -21.50058 -20.08592 -19.06510 -18.92942 -17.96816 -17.78297 -17.18003 -16.94136 -16.75025 -16.50458 -15.96677 -15.64090 -15.40925 -14.92971 -14.58087 -14.39255 -14.11692 -13.94587 -13.58774 -13.47132 -13.31604 -12.85176 -12.61036 -12.50924 -12.49968 -12.20268 -12.02900 -11.76223 -11.00006 -10.56960 -10.18038 -9.61985 -9.28853 -8.55540 -8.46602 -6.08764 -0.00158 0.53030 1.24490 1.37349 1.49994 1.61005 2.08059 2.12054 2.22906 2.73581 2.91941 3.09183 3.24296 3.72227 3.93495 3.96876 4.11370 4.25126 4.34729 4.43434 4.48780 4.65739 4.67514 4.74951 4.83136 4.91117 4.94170 5.19179 5.28752 5.56048 5.58196 5.68832 5.75201 6.08624 6.11488 6.59593 6.65254 7.02672 7.39108 8.00159 8.71296 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.033045 B = 0.004465 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.131514 B = 6269.670879 C = 6552.175763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.490 5.490 3 C -0.334 4.334 4 H 0.036 0.964 5 C 0.005 3.995 6 N -0.919 5.919 7 Si 0.959 3.041 8 H -0.239 1.239 9 H -0.295 1.295 10 H -0.251 1.251 11 C 0.460 3.540 12 O -0.612 6.612 13 C -0.049 4.049 14 C -0.172 4.172 15 C 0.074 3.926 16 N -0.582 5.582 17 H 0.430 0.570 18 C 0.042 3.958 19 C -0.090 4.090 20 C -0.092 4.092 21 C -0.121 4.121 22 C -0.134 4.134 23 C 0.065 3.935 24 F -0.149 7.149 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.102 0.898 28 H 0.278 0.722 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.204 0.796 32 H 0.128 0.872 33 H 0.160 0.840 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 -19.890 0.883 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.213 5.213 3 C -0.462 4.462 4 H 0.054 0.946 5 C -0.196 4.196 6 N -0.557 5.557 7 Si 0.782 3.218 8 H -0.164 1.164 9 H -0.223 1.223 10 H -0.175 1.175 11 C 0.250 3.750 12 O -0.496 6.496 13 C -0.089 4.089 14 C -0.179 4.179 15 C -0.053 4.053 16 N -0.186 5.186 17 H 0.269 0.731 18 C -0.066 4.066 19 C -0.095 4.095 20 C -0.111 4.111 21 C -0.140 4.140 22 C -0.154 4.154 23 C 0.044 3.956 24 F -0.127 7.127 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.221 0.779 32 H 0.146 0.854 33 H 0.178 0.822 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.831 -19.801 0.732 20.395 hybrid contribution 0.576 0.365 -0.825 1.070 sum -4.255 -19.436 -0.092 19.897 Atomic orbital electron populations 1.22264 0.80057 1.02838 1.03403 1.43857 1.06054 1.04485 1.66888 1.18633 1.09136 0.88352 1.30049 0.94586 1.26258 1.00099 0.93756 0.99500 1.69899 1.46528 0.99342 1.39898 0.85688 0.79101 0.79037 0.77949 1.16373 1.22285 1.17481 1.21429 0.88048 0.86117 0.79368 1.90538 1.16804 1.87949 1.54267 1.19959 0.96095 0.86618 1.06238 1.19899 1.05539 1.00800 0.91664 1.22109 0.92715 0.90336 1.00164 1.41604 1.40224 1.32233 1.04504 0.73090 1.18345 1.02539 1.00573 0.85108 1.19260 0.99247 0.96583 0.94397 1.20621 0.99943 0.99459 0.91088 1.20780 0.96721 0.95337 1.01170 1.21131 1.01719 1.00411 0.92095 1.16882 0.96032 0.90495 0.92227 1.91433 1.72083 1.59385 1.89845 0.90803 0.92902 0.87950 0.91212 0.86936 0.85630 0.77908 0.85446 0.82231 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.94 8.78 127.77 1.12 3.06 16 2 N -0.49 -23.24 2.59 -658.89 -1.70 -24.94 16 3 C -0.33 -19.82 9.37 84.04 0.79 -19.03 16 4 H 0.04 2.55 7.90 -2.91 -0.02 2.53 16 5 C 0.00 0.28 5.29 84.93 0.45 0.73 16 6 N -0.92 -55.45 13.96 21.66 0.30 -55.15 16 7 Si 0.96 41.18 24.96 68.60 1.71 42.89 16 8 H -0.24 -8.83 6.69 99.48 0.67 -8.16 16 9 H -0.30 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 11 C 0.46 20.89 7.62 87.66 0.67 21.55 16 12 O -0.61 -34.50 15.90 -3.06 -0.05 -34.55 16 13 C -0.05 -1.49 4.85 29.10 0.14 -1.35 16 14 C -0.17 -5.40 4.81 -18.63 -0.09 -5.49 16 15 C 0.07 1.91 11.73 83.00 0.97 2.89 16 16 N -0.58 -14.61 6.07 -187.49 -1.14 -15.75 16 17 H 0.43 7.95 8.96 -92.71 -0.83 7.12 16 18 C 0.04 1.27 7.26 39.04 0.28 1.56 16 19 C -0.09 -2.92 6.35 -20.20 -0.13 -3.05 16 20 C -0.09 -2.72 10.05 22.24 0.22 -2.50 16 21 C -0.12 -2.89 9.97 22.03 0.22 -2.67 16 22 C -0.13 -3.15 9.99 22.34 0.22 -2.93 16 23 C 0.07 1.80 7.32 22.46 0.16 1.97 16 24 F -0.15 -3.94 17.27 44.97 0.78 -3.16 16 25 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.05 1.95 3.42 -2.39 -0.01 1.94 16 27 H 0.10 2.54 6.64 -2.39 -0.02 2.52 16 28 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.11 2.87 8.11 -2.39 -0.02 2.85 16 30 H 0.13 2.86 7.41 -2.39 -0.02 2.84 16 31 H 0.20 3.72 8.06 -2.92 -0.02 3.70 16 32 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 33 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -81.61 296.19 5.22 -76.39 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.28 Total: 19.53 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.04 Total: -5.26 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -2.54 Total: -95.84 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.05 Total: -34.55 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.71 Total: 42.89 kcal Total: -81.61 5.22 -76.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259567597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.098 kcal (2) G-P(sol) polarization free energy of solvation -81.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds