Wall clock time and date at job start Mon Mar 30 2020 01:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37099 * 119.99938 * 2 1 4 4 H 1.07997 * 119.99819 * 204.39513 * 3 2 1 5 5 C 1.38953 * 120.00038 * 24.39327 * 3 2 1 6 6 N 1.31413 * 119.99725 * 12.65787 * 5 3 2 7 7 Si 1.86800 * 119.99843 * 192.65815 * 5 3 2 8 8 H 1.48495 * 109.47355 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.46902 * 120.00324 * 7 5 3 10 10 H 1.48502 * 109.46849 * 239.99802 * 7 5 3 11 11 C 1.34781 * 120.00277 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00101 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99680 * 359.97438 * 11 2 1 14 14 C 1.50694 * 109.46770 * 180.02562 * 13 11 2 15 15 C 1.34210 * 126.50328 * 264.97350 * 14 13 11 16 16 N 1.36905 * 109.92552 * 179.77976 * 15 14 13 17 17 H 0.96998 * 125.07009 * 180.02562 * 16 15 14 18 18 C 1.37697 * 109.86471 * 0.41046 * 16 15 14 19 19 C 1.39121 * 133.47405 * 179.88340 * 18 16 15 20 20 C 1.37941 * 119.76030 * 179.64665 * 19 18 16 21 21 F 1.35103 * 119.69507 * 180.02562 * 20 19 18 22 22 C 1.39032 * 120.61116 * 0.05046 * 20 19 18 23 23 C 1.36604 * 120.50141 * 359.97242 * 22 20 19 24 24 C 1.39628 * 119.80279 * 0.02562 * 23 22 20 25 25 H 1.09003 * 109.47749 * 265.86267 * 1 2 3 26 26 H 1.09000 * 109.47470 * 25.86739 * 1 2 3 27 27 H 1.09008 * 109.47040 * 145.86244 * 1 2 3 28 28 H 0.97003 * 119.99508 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.46587 * 60.00466 * 13 11 2 30 30 H 1.08998 * 109.47242 * 300.00319 * 13 11 2 31 31 H 1.07994 * 125.03614 * 359.97438 * 15 14 13 32 32 H 1.07997 * 120.12023 * 359.67949 * 19 18 16 33 33 H 1.08002 * 119.74918 * 179.97438 * 22 20 19 34 34 H 1.08002 * 120.09746 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1581 1.2290 -0.3863 5 6 1.5487 2.3370 0.4970 6 7 0.4346 2.2491 1.1884 7 14 2.3234 4.0073 0.1822 8 1 3.5643 3.8352 -0.6150 9 1 1.3680 4.8628 -0.5664 10 1 2.6539 4.6518 1.4786 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0017 14 6 2.3647 -3.6177 0.0027 15 6 2.8117 -4.2869 -1.0714 16 7 3.6942 -5.2583 -0.6818 17 1 4.1494 -5.8704 -1.2809 18 6 3.8326 -5.2427 0.6881 19 6 4.5825 -5.9990 1.5831 20 6 4.5110 -5.7305 2.9342 21 9 5.2403 -6.4655 3.8021 22 6 3.6951 -4.7108 3.4112 23 6 2.9508 -3.9574 2.5484 24 6 3.0086 -4.2127 1.1768 25 1 -0.3635 -0.0741 1.0250 26 1 -0.3634 0.9247 -0.4484 27 1 -0.3633 -0.8507 -0.5768 28 1 0.0148 3.0516 1.5357 29 1 0.7585 -2.5306 -0.8881 30 1 0.7590 -2.5295 0.8919 31 1 2.5209 -4.0864 -2.0919 32 1 5.2187 -6.7932 1.2213 33 1 3.6494 -4.5128 4.4719 34 1 2.3195 -3.1666 2.9259 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259601262.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:12 Heat of formation + Delta-G solvation = -13.820856 kcal Electronic energy + Delta-G solvation = -20557.588563 eV Core-core repulsion = 17177.796167 eV Total energy + Delta-G solvation = -3379.792396 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.74233 -41.08133 -38.26050 -36.48300 -34.62082 -32.66970 -31.52820 -29.97531 -28.88267 -27.06922 -25.93385 -24.06231 -22.98223 -21.71186 -20.04283 -18.57941 -17.72039 -16.97015 -16.79238 -16.03060 -15.90139 -15.46223 -15.09057 -14.64598 -14.21591 -14.06818 -13.86144 -13.75872 -13.43082 -12.86675 -12.51206 -12.24590 -11.98652 -11.58252 -11.39448 -11.21715 -11.18275 -10.96555 -10.86530 -10.71951 -10.29305 -10.17986 -9.42240 -8.96403 -8.31445 -8.02998 -7.58506 -7.41779 -6.26960 -3.82706 1.15787 1.64138 2.85708 3.18085 3.18719 3.28327 3.35273 3.92891 3.99261 4.20813 4.50549 4.80803 4.98000 5.04867 5.14985 5.19017 5.30428 5.43647 5.65404 5.74841 5.89622 6.05604 6.07377 6.11923 6.26689 6.39695 6.42819 6.62297 6.84911 6.89463 6.98211 7.23769 7.26489 7.61884 7.65750 8.21923 8.56386 9.26738 9.49931 10.08033 10.78145 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.025693 B = 0.004336 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.526704 B = 6455.587393 C = 6880.120378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.453 5.453 3 C -0.303 4.303 4 H 0.096 0.904 5 C 0.029 3.971 6 N -0.884 5.884 7 Si 0.923 3.077 8 H -0.269 1.269 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.451 3.549 12 O -0.579 6.579 13 C -0.063 4.063 14 C -0.117 4.117 15 C 0.048 3.952 16 N -0.594 5.594 17 H 0.414 0.586 18 C 0.120 3.880 19 C -0.173 4.173 20 C 0.112 3.888 21 F -0.144 7.144 22 C -0.185 4.185 23 C -0.028 4.028 24 C -0.098 4.098 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.170 0.830 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -14.291 -1.745 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.173 5.173 3 C -0.431 4.431 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.750 3.250 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.238 3.762 12 O -0.463 6.463 13 C -0.104 4.104 14 C -0.124 4.124 15 C -0.077 4.077 16 N -0.197 5.197 17 H 0.250 0.750 18 C 0.011 3.989 19 C -0.195 4.195 20 C 0.092 3.908 21 F -0.123 7.123 22 C -0.205 4.205 23 C -0.046 4.046 24 C -0.103 4.103 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.187 0.813 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.732 -14.211 -1.747 14.336 hybrid contribution 0.536 0.578 -0.196 0.812 sum 1.268 -13.633 -1.943 13.829 Atomic orbital electron populations 1.21460 0.81404 0.99791 1.00511 1.43594 1.05345 1.04729 1.63584 1.19662 1.00497 0.84228 1.38685 0.88606 1.25312 0.96685 0.99998 0.95336 1.70000 1.19361 1.29341 1.33724 0.85914 0.79152 0.81755 0.78189 1.19325 1.20747 1.20814 1.20057 0.88143 0.84542 0.83414 1.90532 1.13952 1.87037 1.54754 1.19979 0.96199 0.90978 1.03231 1.19799 1.02907 0.98910 0.90778 1.21513 0.94928 0.92145 0.99099 1.41581 1.40715 1.32500 1.04891 0.74969 1.17739 0.99244 0.98132 0.83752 1.19642 1.05111 1.03938 0.90770 1.17117 0.94466 0.93009 0.86226 1.91460 1.75780 1.75973 1.69095 1.20538 1.00955 0.98131 1.00850 1.20187 0.96625 0.96912 0.90878 1.19090 1.00256 0.97453 0.93462 0.93108 0.90857 0.95630 0.92437 0.89708 0.89492 0.81324 0.85438 0.84977 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.44 8.44 59.84 0.51 2.94 16 2 N -0.45 -11.47 3.01 -122.19 -0.37 -11.84 16 3 C -0.30 -8.46 9.24 -14.93 -0.14 -8.59 16 4 H 0.10 2.83 7.45 -52.49 -0.39 2.44 16 5 C 0.03 0.78 5.04 -17.47 -0.09 0.69 16 6 N -0.88 -23.60 10.83 55.50 0.60 -23.00 16 7 Si 0.92 20.88 29.57 -169.99 -5.03 15.85 16 8 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 C 0.45 10.81 7.62 -10.98 -0.08 10.72 16 12 O -0.58 -16.11 15.75 5.55 0.09 -16.02 16 13 C -0.06 -1.12 4.84 -29.04 -0.14 -1.26 16 14 C -0.12 -2.01 4.81 -102.70 -0.49 -2.50 16 15 C 0.05 0.67 11.74 -16.71 -0.20 0.48 16 16 N -0.59 -7.53 6.07 -10.64 -0.06 -7.59 16 17 H 0.41 3.63 8.96 -40.82 -0.37 3.27 16 18 C 0.12 1.81 7.28 -83.99 -0.61 1.20 16 19 C -0.17 -2.39 10.05 -39.36 -0.40 -2.79 16 20 C 0.11 1.63 7.28 -39.40 -0.29 1.35 16 21 F -0.14 -2.05 17.25 2.25 0.04 -2.01 16 22 C -0.18 -2.72 9.95 -39.88 -0.40 -3.11 16 23 C -0.03 -0.45 10.05 -39.65 -0.40 -0.85 16 24 C -0.10 -1.68 6.35 -105.12 -0.67 -2.35 16 25 H 0.05 1.13 7.83 -51.93 -0.41 0.72 16 26 H 0.07 1.70 6.80 -51.93 -0.35 1.34 16 27 H 0.03 0.44 6.61 -51.92 -0.34 0.10 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.08 1.28 7.41 -51.93 -0.38 0.89 16 30 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 31 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -33.06 300.20 -7.09 -40.15 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.49 Total: 4.02 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.39 Total: -4.08 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.17 Total: -42.43 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.06 -7.09 -40.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601262.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.332 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds