Wall clock time and date at job start Mon Mar 30 2020 01:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37099 * 119.99938 * 2 1 4 4 H 1.07997 * 119.99819 * 204.39513 * 3 2 1 5 5 C 1.38953 * 120.00038 * 24.39327 * 3 2 1 6 6 N 1.31413 * 119.99725 * 12.65787 * 5 3 2 7 7 Si 1.86800 * 119.99843 * 192.65815 * 5 3 2 8 8 H 1.48495 * 109.47355 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.46902 * 120.00324 * 7 5 3 10 10 H 1.48502 * 109.46849 * 239.99802 * 7 5 3 11 11 C 1.34781 * 120.00277 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00101 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99680 * 359.97438 * 11 2 1 14 14 C 1.50694 * 109.46770 * 180.02562 * 13 11 2 15 15 C 1.34210 * 126.50328 * 264.97350 * 14 13 11 16 16 N 1.36905 * 109.92552 * 179.77976 * 15 14 13 17 17 H 0.96998 * 125.07009 * 180.02562 * 16 15 14 18 18 C 1.37697 * 109.86471 * 0.41046 * 16 15 14 19 19 C 1.39121 * 133.47405 * 179.88340 * 18 16 15 20 20 C 1.37941 * 119.76030 * 179.64665 * 19 18 16 21 21 F 1.35103 * 119.69507 * 180.02562 * 20 19 18 22 22 C 1.39032 * 120.61116 * 0.05046 * 20 19 18 23 23 C 1.36604 * 120.50141 * 359.97242 * 22 20 19 24 24 C 1.39628 * 119.80279 * 0.02562 * 23 22 20 25 25 H 1.09003 * 109.47749 * 265.86267 * 1 2 3 26 26 H 1.09000 * 109.47470 * 25.86739 * 1 2 3 27 27 H 1.09008 * 109.47040 * 145.86244 * 1 2 3 28 28 H 0.97003 * 119.99508 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.46587 * 60.00466 * 13 11 2 30 30 H 1.08998 * 109.47242 * 300.00319 * 13 11 2 31 31 H 1.07994 * 125.03614 * 359.97438 * 15 14 13 32 32 H 1.07997 * 120.12023 * 359.67949 * 19 18 16 33 33 H 1.08002 * 119.74918 * 179.97438 * 22 20 19 34 34 H 1.08002 * 120.09746 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1581 1.2290 -0.3863 5 6 1.5487 2.3370 0.4970 6 7 0.4346 2.2491 1.1884 7 14 2.3234 4.0073 0.1822 8 1 3.5643 3.8352 -0.6150 9 1 1.3680 4.8628 -0.5664 10 1 2.6539 4.6518 1.4786 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0017 14 6 2.3647 -3.6177 0.0027 15 6 2.8117 -4.2869 -1.0714 16 7 3.6942 -5.2583 -0.6818 17 1 4.1494 -5.8704 -1.2809 18 6 3.8326 -5.2427 0.6881 19 6 4.5825 -5.9990 1.5831 20 6 4.5110 -5.7305 2.9342 21 9 5.2403 -6.4655 3.8021 22 6 3.6951 -4.7108 3.4112 23 6 2.9508 -3.9574 2.5484 24 6 3.0086 -4.2127 1.1768 25 1 -0.3635 -0.0741 1.0250 26 1 -0.3634 0.9247 -0.4484 27 1 -0.3633 -0.8507 -0.5768 28 1 0.0148 3.0516 1.5357 29 1 0.7585 -2.5306 -0.8881 30 1 0.7590 -2.5295 0.8919 31 1 2.5209 -4.0864 -2.0919 32 1 5.2187 -6.7932 1.2213 33 1 3.6494 -4.5128 4.4719 34 1 2.3195 -3.1666 2.9259 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259601262.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:12 Heat of formation + Delta-G solvation = -34.131924 kcal Electronic energy + Delta-G solvation = -20558.469317 eV Core-core repulsion = 17177.796167 eV Total energy + Delta-G solvation = -3380.673150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.85537 -42.21354 -40.10792 -37.61282 -36.56172 -34.05496 -33.42693 -31.20807 -30.07016 -28.58981 -27.61824 -25.92630 -24.11176 -22.84703 -21.57839 -19.95145 -18.96936 -18.77631 -18.09094 -17.72704 -17.18147 -16.61916 -16.46669 -16.20254 -15.91117 -15.82626 -15.12530 -14.88842 -14.60599 -14.27421 -13.93415 -13.83775 -13.43043 -13.31589 -13.11342 -12.97308 -12.61416 -12.40138 -12.31820 -12.18634 -12.10346 -11.84465 -10.95383 -10.64648 -10.18591 -9.57232 -9.16978 -8.58418 -8.27626 -5.92536 0.01367 0.47973 1.37764 1.42084 1.55223 1.68865 2.15361 2.16025 2.32965 2.74403 3.14677 3.31676 3.40643 3.70705 3.89950 4.06609 4.09182 4.33222 4.37472 4.51494 4.57647 4.70204 4.76734 4.89491 4.94886 5.08992 5.13433 5.21134 5.45141 5.46507 5.49765 5.69460 5.78750 6.11266 6.19274 6.58101 6.73547 7.26138 7.58117 8.16548 8.74578 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.025693 B = 0.004336 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.526704 B = 6455.587393 C = 6880.120378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.470 5.470 3 C -0.339 4.339 4 H 0.066 0.934 5 C -0.003 4.003 6 N -0.899 5.899 7 Si 0.984 3.016 8 H -0.275 1.275 9 H -0.264 1.264 10 H -0.279 1.279 11 C 0.444 3.556 12 O -0.626 6.626 13 C -0.046 4.046 14 C -0.167 4.167 15 C 0.072 3.928 16 N -0.577 5.577 17 H 0.434 0.566 18 C 0.107 3.893 19 C -0.161 4.161 20 C 0.099 3.901 21 F -0.142 7.142 22 C -0.183 4.183 23 C -0.054 4.054 24 C -0.125 4.125 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.271 0.729 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.205 0.795 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 -15.431 -2.850 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.190 5.190 3 C -0.467 4.467 4 H 0.084 0.916 5 C -0.205 4.205 6 N -0.538 5.538 7 Si 0.808 3.192 8 H -0.200 1.200 9 H -0.189 1.189 10 H -0.204 1.204 11 C 0.234 3.766 12 O -0.513 6.513 13 C -0.086 4.086 14 C -0.173 4.173 15 C -0.054 4.054 16 N -0.182 5.182 17 H 0.275 0.725 18 C -0.002 4.002 19 C -0.183 4.183 20 C 0.078 3.922 21 F -0.121 7.121 22 C -0.202 4.202 23 C -0.073 4.073 24 C -0.130 4.130 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.221 0.779 32 H 0.175 0.825 33 H 0.165 0.835 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.472 -15.384 -2.857 15.655 hybrid contribution 0.645 0.868 0.151 1.092 sum 1.118 -14.516 -2.706 14.809 Atomic orbital electron populations 1.21425 0.79436 1.00858 1.00470 1.43878 1.06685 1.04599 1.63876 1.19580 1.00174 0.86386 1.40595 0.91564 1.26013 0.97113 1.02723 0.94603 1.70070 1.19839 1.30439 1.33455 0.85013 0.78337 0.77735 0.78072 1.20005 1.18931 1.20443 1.21153 0.88009 0.86115 0.81344 1.90484 1.16339 1.88024 1.56422 1.19832 0.96106 0.87585 1.05104 1.19892 1.05159 1.00321 0.91964 1.22035 0.92954 0.90584 0.99854 1.41581 1.39971 1.32268 1.04342 0.72526 1.17873 0.99354 0.98048 0.84896 1.19920 1.04316 1.03815 0.90244 1.17210 0.94872 0.93293 0.86779 1.91463 1.75703 1.75861 1.69086 1.20720 1.00262 0.97723 1.01538 1.20246 0.97918 0.97756 0.91387 1.19445 1.01139 0.98523 0.93937 0.94203 0.92711 0.90923 0.91905 0.86322 0.88730 0.77855 0.82484 0.83452 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.20 8.44 127.77 1.08 6.28 16 2 N -0.47 -24.17 3.01 -658.89 -1.98 -26.16 16 3 C -0.34 -19.50 9.24 84.04 0.78 -18.72 16 4 H 0.07 4.11 7.45 -2.91 -0.02 4.08 16 5 C 0.00 -0.18 5.04 84.93 0.43 0.25 16 6 N -0.90 -48.11 10.83 21.66 0.23 -47.87 16 7 Si 0.98 43.09 29.57 68.60 2.03 45.12 16 8 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 9 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 11 C 0.44 21.49 7.62 87.66 0.67 22.16 16 12 O -0.63 -35.82 15.75 -3.06 -0.05 -35.87 16 13 C -0.05 -1.58 4.84 29.10 0.14 -1.44 16 14 C -0.17 -5.50 4.81 -18.62 -0.09 -5.59 16 15 C 0.07 1.83 11.74 82.98 0.97 2.80 16 16 N -0.58 -12.99 6.07 -187.58 -1.14 -14.13 16 17 H 0.43 6.06 8.96 -92.71 -0.83 5.23 16 18 C 0.11 3.06 7.28 39.03 0.28 3.34 16 19 C -0.16 -4.15 10.05 22.41 0.23 -3.93 16 20 C 0.10 2.77 7.28 22.39 0.16 2.93 16 21 F -0.14 -3.84 17.25 44.97 0.78 -3.06 16 22 C -0.18 -5.36 9.95 22.08 0.22 -5.14 16 23 C -0.05 -1.82 10.05 22.22 0.22 -1.60 16 24 C -0.13 -4.29 6.35 -20.19 -0.13 -4.41 16 25 H 0.04 1.77 7.83 -2.39 -0.02 1.75 16 26 H 0.05 2.52 6.80 -2.39 -0.02 2.50 16 27 H 0.07 2.37 6.61 -2.38 -0.02 2.36 16 28 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 29 H 0.12 3.20 7.41 -2.39 -0.02 3.19 16 30 H 0.09 3.08 8.11 -2.39 -0.02 3.06 16 31 H 0.20 3.61 8.06 -2.91 -0.02 3.58 16 32 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -73.75 300.20 5.15 -68.61 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.32 Total: 16.43 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 4.96 Total: -3.07 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -2.89 Total: -88.15 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.05 Total: -35.87 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -73.75 5.15 -68.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601262.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.475 kcal (2) G-P(sol) polarization free energy of solvation -73.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds