Wall clock time and date at job start Mon Mar 30 2020 01:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36817 * 120.00241 * 2 1 4 4 H 1.07991 * 119.99943 * 145.02170 * 3 2 1 5 5 C 1.39054 * 119.99904 * 325.01809 * 3 2 1 6 6 N 1.31366 * 120.00011 * 42.27022 * 5 3 2 7 7 Si 1.86796 * 119.99979 * 222.27241 * 5 3 2 8 8 H 1.48504 * 109.47512 * 59.99576 * 7 5 3 9 9 H 1.48499 * 109.47232 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46703 * 299.99967 * 7 5 3 11 11 C 1.34776 * 119.99418 * 179.97438 * 2 1 3 12 12 O 1.21715 * 119.99842 * 185.76691 * 11 2 1 13 13 C 1.46825 * 120.00433 * 5.76880 * 11 2 1 14 14 C 1.36033 * 125.44538 * 351.64464 * 13 11 2 15 15 C 1.41521 * 107.73948 * 180.02562 * 14 13 11 16 16 C 1.40165 * 133.31576 * 180.25762 * 15 14 13 17 17 C 1.36384 * 119.86316 * 180.21539 * 16 15 14 18 18 C 1.39181 * 120.58486 * 359.49935 * 17 16 15 19 19 F 1.35096 * 119.70107 * 180.27865 * 18 17 16 20 20 C 1.37934 * 120.59272 * 0.24862 * 18 17 16 21 21 C 1.39139 * 119.80186 * 0.02562 * 20 18 17 22 22 N 1.37543 * 133.13626 * 179.97438 * 21 20 18 23 23 C 1.46503 * 125.61715 * 0.06491 * 22 21 20 24 24 H 1.08995 * 109.47167 * 235.59206 * 1 2 3 25 25 H 1.09000 * 109.46611 * 355.59165 * 1 2 3 26 26 H 1.09001 * 109.47171 * 115.58839 * 1 2 3 27 27 H 0.96994 * 120.00229 * 180.02562 * 6 5 3 28 28 H 1.07997 * 126.13417 * 0.02562 * 14 13 11 29 29 H 1.07999 * 120.06600 * 359.96660 * 16 15 14 30 30 H 1.07997 * 119.70625 * 179.77547 * 17 16 15 31 31 H 1.08008 * 120.10070 * 180.02562 * 20 18 17 32 32 H 1.08996 * 109.47381 * 88.19479 * 23 22 21 33 33 H 1.09001 * 109.46646 * 208.19858 * 23 22 21 34 34 H 1.09000 * 109.46739 * 328.19346 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1492 1.1848 0.0000 4 1 3.0828 1.2693 0.5361 5 6 1.6424 2.2803 -0.6904 6 7 0.3598 2.5582 -0.6309 7 14 2.7852 3.3567 -1.7026 8 1 3.4331 2.5362 -2.7573 9 1 2.0042 4.4494 -2.3360 10 1 3.8271 3.9398 -0.8195 11 6 2.1388 -1.1673 0.0005 12 8 3.3513 -1.1700 0.1064 13 6 1.4102 -2.4356 -0.1267 14 6 0.0576 -2.5755 -0.0902 15 6 -0.2381 -3.9506 -0.2472 16 6 -1.4356 -4.6774 -0.2934 17 6 -1.4025 -6.0313 -0.4549 18 6 -0.1886 -6.6995 -0.5850 19 9 -0.1768 -8.0403 -0.7498 20 6 1.0026 -6.0049 -0.5478 21 6 0.9928 -4.6239 -0.3782 22 7 1.9891 -3.6787 -0.3020 23 6 3.4268 -3.9452 -0.3932 24 1 -0.3633 -0.5807 0.8478 25 1 -0.3632 1.0247 0.0790 26 1 -0.3633 -0.4439 -0.9269 27 1 0.0062 3.3221 -1.1128 28 1 -0.6617 -1.7799 0.0359 29 1 -2.3825 -4.1669 -0.1974 30 1 -2.3266 -6.5892 -0.4866 31 1 1.9401 -6.5314 -0.6499 32 1 3.7360 -3.9173 -1.4380 33 1 3.9730 -3.1870 0.1679 34 1 3.6408 -4.9296 0.0230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259754101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:20 Heat of formation + Delta-G solvation = 17.805543 kcal Electronic energy + Delta-G solvation = -20894.927685 eV Core-core repulsion = 17516.506713 eV Total energy + Delta-G solvation = -3378.420973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.75832 -41.28634 -38.37777 -36.39304 -34.95412 -33.01472 -31.78599 -30.28601 -28.68108 -26.99363 -25.65179 -25.09888 -22.93112 -21.58068 -20.61938 -19.33358 -17.49145 -17.14383 -16.48349 -16.06654 -15.60611 -15.39919 -15.08876 -14.84538 -14.53574 -14.19528 -13.98770 -13.74845 -13.32267 -12.97048 -12.61095 -12.49288 -12.23877 -11.94536 -11.80824 -11.60173 -11.45112 -10.97260 -10.75152 -10.66531 -10.46834 -9.97601 -9.53993 -8.87519 -8.64644 -7.99194 -7.83777 -7.39268 -6.74694 -4.02177 0.97445 1.64194 2.54213 2.90569 3.11308 3.18316 3.28331 3.89868 3.97658 4.17617 4.42902 4.60715 4.74595 4.84793 5.02684 5.13274 5.37017 5.39934 5.54110 5.61949 5.72364 5.90500 6.00763 6.12786 6.23669 6.28885 6.32477 6.52490 6.57944 6.91829 6.94881 7.04736 7.34161 7.50088 7.56004 8.06974 8.36132 8.93048 9.15123 9.78519 10.21378 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.033364 B = 0.004590 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.029187 B = 6099.133410 C = 6694.124856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.410 5.410 3 C -0.340 4.340 4 H 0.104 0.896 5 C 0.070 3.930 6 N -0.824 5.824 7 Si 0.902 3.098 8 H -0.270 1.270 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.491 3.509 12 O -0.590 6.590 13 C 0.074 3.926 14 C -0.200 4.200 15 C -0.115 4.115 16 C -0.039 4.039 17 C -0.185 4.185 18 C 0.105 3.895 19 F -0.145 7.145 20 C -0.162 4.162 21 C 0.114 3.886 22 N -0.453 5.453 23 C 0.073 3.927 24 H 0.042 0.958 25 H 0.144 0.856 26 H 0.043 0.957 27 H 0.278 0.722 28 H 0.179 0.821 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -10.925 -0.562 11.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.126 5.126 3 C -0.466 4.466 4 H 0.122 0.878 5 C -0.140 4.140 6 N -0.457 5.457 7 Si 0.726 3.274 8 H -0.195 1.195 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.281 3.719 12 O -0.478 6.478 13 C -0.037 4.037 14 C -0.225 4.225 15 C -0.120 4.120 16 C -0.058 4.058 17 C -0.205 4.205 18 C 0.085 3.915 19 F -0.124 7.124 20 C -0.184 4.184 21 C 0.004 3.996 22 N -0.134 5.134 23 C -0.068 4.068 24 H 0.060 0.940 25 H 0.162 0.838 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.196 0.804 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.345 -10.771 -0.580 11.293 hybrid contribution 0.433 0.052 -0.612 0.751 sum -2.912 -10.719 -1.192 11.171 Atomic orbital electron populations 1.23333 0.81810 1.08514 0.97873 1.43188 1.05478 1.04128 1.59787 1.19251 1.06853 0.87525 1.32963 0.87840 1.25457 0.95660 0.97519 0.95369 1.69646 1.14626 1.26320 1.35115 0.86413 0.81344 0.78447 0.81183 1.19511 1.20911 1.19278 1.16843 0.86628 0.82050 0.86412 1.90581 1.13451 1.86420 1.57376 1.20500 0.92237 0.86261 1.04682 1.22246 0.94800 0.95714 1.09692 1.18379 0.92199 0.94232 1.07228 1.20195 0.96814 0.92457 0.96317 1.20468 0.96400 0.95032 1.08605 1.17116 0.93793 0.76653 1.03952 1.91454 1.97437 1.30230 1.93247 1.19699 0.97603 0.91208 1.09865 1.17926 0.88210 0.89951 1.03538 1.43901 1.05888 1.04369 1.59212 1.22187 0.77794 1.03266 1.03525 0.94016 0.83844 0.93897 0.91087 0.80428 0.85005 0.85177 0.85483 0.91528 0.86848 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 8.01 59.85 0.48 1.06 16 2 N -0.41 -10.21 3.01 -123.64 -0.37 -10.58 16 3 C -0.34 -9.02 8.89 -15.02 -0.13 -9.16 16 4 H 0.10 2.89 7.80 -52.49 -0.41 2.48 16 5 C 0.07 1.73 5.29 -17.45 -0.09 1.63 16 6 N -0.82 -19.80 10.53 55.50 0.58 -19.22 16 7 Si 0.90 19.42 29.69 -169.99 -5.05 14.37 16 8 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 C 0.49 12.04 7.58 -12.79 -0.10 11.94 16 12 O -0.59 -15.73 14.33 5.18 0.07 -15.66 16 13 C 0.07 1.54 6.76 -82.30 -0.56 0.98 16 14 C -0.20 -3.67 8.77 -39.12 -0.34 -4.02 16 15 C -0.12 -1.94 6.16 -106.91 -0.66 -2.60 16 16 C -0.04 -0.53 10.06 -39.53 -0.40 -0.93 16 17 C -0.19 -2.38 9.94 -39.90 -0.40 -2.78 16 18 C 0.11 1.49 7.29 -39.34 -0.29 1.20 16 19 F -0.14 -2.00 17.26 2.25 0.04 -1.96 16 20 C -0.16 -2.40 9.97 -39.36 -0.39 -2.80 16 21 C 0.11 1.95 6.81 -83.96 -0.57 1.38 16 22 N -0.45 -8.45 3.23 -117.70 -0.38 -8.83 16 23 C 0.07 1.17 10.66 59.85 0.64 1.80 16 24 H 0.04 0.79 6.16 -51.93 -0.32 0.47 16 25 H 0.14 3.28 4.77 -51.93 -0.25 3.03 16 26 H 0.04 0.86 6.77 -51.93 -0.35 0.50 16 27 H 0.28 6.21 8.31 -40.82 -0.34 5.87 16 28 H 0.18 3.02 3.88 -52.49 -0.20 2.82 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.11 2.05 6.00 -51.93 -0.31 1.74 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -28.48 289.68 -6.64 -35.12 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.09 Total: 4.65 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.81 Total: -2.27 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.17 Total: -38.62 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.07 Total: -15.66 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.05 Total: 14.37 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.48 -6.64 -35.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259754101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.925 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds