Wall clock time and date at job start Mon Mar 30 2020 01:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36817 * 120.00241 * 2 1 4 4 H 1.07991 * 119.99943 * 145.02170 * 3 2 1 5 5 C 1.39054 * 119.99904 * 325.01809 * 3 2 1 6 6 N 1.31366 * 120.00011 * 42.27022 * 5 3 2 7 7 Si 1.86796 * 119.99979 * 222.27241 * 5 3 2 8 8 H 1.48504 * 109.47512 * 59.99576 * 7 5 3 9 9 H 1.48499 * 109.47232 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46703 * 299.99967 * 7 5 3 11 11 C 1.34776 * 119.99418 * 179.97438 * 2 1 3 12 12 O 1.21715 * 119.99842 * 185.76691 * 11 2 1 13 13 C 1.46825 * 120.00433 * 5.76880 * 11 2 1 14 14 C 1.36033 * 125.44538 * 351.64464 * 13 11 2 15 15 C 1.41521 * 107.73948 * 180.02562 * 14 13 11 16 16 C 1.40165 * 133.31576 * 180.25762 * 15 14 13 17 17 C 1.36384 * 119.86316 * 180.21539 * 16 15 14 18 18 C 1.39181 * 120.58486 * 359.49935 * 17 16 15 19 19 F 1.35096 * 119.70107 * 180.27865 * 18 17 16 20 20 C 1.37934 * 120.59272 * 0.24862 * 18 17 16 21 21 C 1.39139 * 119.80186 * 0.02562 * 20 18 17 22 22 N 1.37543 * 133.13626 * 179.97438 * 21 20 18 23 23 C 1.46503 * 125.61715 * 0.06491 * 22 21 20 24 24 H 1.08995 * 109.47167 * 235.59206 * 1 2 3 25 25 H 1.09000 * 109.46611 * 355.59165 * 1 2 3 26 26 H 1.09001 * 109.47171 * 115.58839 * 1 2 3 27 27 H 0.96994 * 120.00229 * 180.02562 * 6 5 3 28 28 H 1.07997 * 126.13417 * 0.02562 * 14 13 11 29 29 H 1.07999 * 120.06600 * 359.96660 * 16 15 14 30 30 H 1.07997 * 119.70625 * 179.77547 * 17 16 15 31 31 H 1.08008 * 120.10070 * 180.02562 * 20 18 17 32 32 H 1.08996 * 109.47381 * 88.19479 * 23 22 21 33 33 H 1.09001 * 109.46646 * 208.19858 * 23 22 21 34 34 H 1.09000 * 109.46739 * 328.19346 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1492 1.1848 0.0000 4 1 3.0828 1.2693 0.5361 5 6 1.6424 2.2803 -0.6904 6 7 0.3598 2.5582 -0.6309 7 14 2.7852 3.3567 -1.7026 8 1 3.4331 2.5362 -2.7573 9 1 2.0042 4.4494 -2.3360 10 1 3.8271 3.9398 -0.8195 11 6 2.1388 -1.1673 0.0005 12 8 3.3513 -1.1700 0.1064 13 6 1.4102 -2.4356 -0.1267 14 6 0.0576 -2.5755 -0.0902 15 6 -0.2381 -3.9506 -0.2472 16 6 -1.4356 -4.6774 -0.2934 17 6 -1.4025 -6.0313 -0.4549 18 6 -0.1886 -6.6995 -0.5850 19 9 -0.1768 -8.0403 -0.7498 20 6 1.0026 -6.0049 -0.5478 21 6 0.9928 -4.6239 -0.3782 22 7 1.9891 -3.6787 -0.3020 23 6 3.4268 -3.9452 -0.3932 24 1 -0.3633 -0.5807 0.8478 25 1 -0.3632 1.0247 0.0790 26 1 -0.3633 -0.4439 -0.9269 27 1 0.0062 3.3221 -1.1128 28 1 -0.6617 -1.7799 0.0359 29 1 -2.3825 -4.1669 -0.1974 30 1 -2.3266 -6.5892 -0.4866 31 1 1.9401 -6.5314 -0.6499 32 1 3.7360 -3.9173 -1.4380 33 1 3.9730 -3.1870 0.1679 34 1 3.6408 -4.9296 0.0230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259754101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:20 Heat of formation + Delta-G solvation = 2.417240 kcal Electronic energy + Delta-G solvation = -20895.594972 eV Core-core repulsion = 17516.506713 eV Total energy + Delta-G solvation = -3379.088260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.86638 -42.63339 -40.10406 -37.66506 -36.79332 -34.57282 -33.43798 -31.44637 -30.10398 -28.56467 -27.07653 -26.83307 -24.34406 -22.83413 -21.96964 -20.89859 -19.23773 -18.47504 -17.94917 -17.46792 -16.92207 -16.87297 -16.41991 -16.30998 -15.97268 -15.82825 -15.63226 -15.05252 -14.66083 -14.48454 -13.94291 -13.73223 -13.73054 -13.66423 -13.37457 -13.21253 -13.00141 -12.51251 -12.16726 -12.10375 -11.94677 -11.58759 -10.81155 -10.74061 -10.52181 -9.76366 -9.18738 -8.69994 -8.60505 -5.98525 -0.27640 0.50573 1.08257 1.32853 1.43982 1.53041 1.62035 2.22086 2.37810 2.74220 2.81999 3.08338 3.28690 3.61271 3.80853 3.89601 4.11866 4.17780 4.33083 4.40623 4.44360 4.63635 4.66423 4.76325 4.82587 4.90435 5.04607 5.17891 5.21041 5.41846 5.62706 5.68008 5.72847 6.03571 6.14725 6.23350 6.49976 7.03126 7.29344 7.92654 8.34947 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.033364 B = 0.004590 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.029187 B = 6099.133410 C = 6694.124856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.426 5.426 3 C -0.387 4.387 4 H 0.072 0.928 5 C 0.049 3.951 6 N -0.828 5.828 7 Si 0.958 3.042 8 H -0.284 1.284 9 H -0.261 1.261 10 H -0.268 1.268 11 C 0.483 3.517 12 O -0.628 6.628 13 C 0.029 3.971 14 C -0.177 4.177 15 C -0.139 4.139 16 C -0.028 4.028 17 C -0.178 4.178 18 C 0.115 3.885 19 F -0.140 7.140 20 C -0.173 4.173 21 C 0.106 3.894 22 N -0.461 5.461 23 C 0.073 3.927 24 H 0.063 0.937 25 H 0.131 0.869 26 H 0.054 0.946 27 H 0.288 0.712 28 H 0.189 0.811 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 -12.636 -1.323 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.141 5.141 3 C -0.513 4.513 4 H 0.090 0.910 5 C -0.162 4.162 6 N -0.460 5.460 7 Si 0.781 3.219 8 H -0.210 1.210 9 H -0.185 1.185 10 H -0.193 1.193 11 C 0.274 3.726 12 O -0.519 6.519 13 C -0.081 4.081 14 C -0.202 4.202 15 C -0.144 4.144 16 C -0.046 4.046 17 C -0.197 4.197 18 C 0.094 3.906 19 F -0.119 7.119 20 C -0.195 4.195 21 C -0.004 4.004 22 N -0.142 5.142 23 C -0.068 4.068 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.206 0.794 29 H 0.183 0.817 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.712 -12.473 -1.337 13.783 hybrid contribution 1.039 0.363 -0.363 1.159 sum -4.673 -12.110 -1.700 13.091 Atomic orbital electron populations 1.23308 0.79955 1.08149 0.99322 1.43337 1.06723 1.03815 1.60232 1.19063 1.06961 0.89251 1.36018 0.91049 1.25964 0.97063 0.98110 0.95019 1.69659 1.15083 1.26725 1.34559 0.85579 0.79802 0.77313 0.79215 1.21044 1.18504 1.19281 1.17421 0.86565 0.83340 0.85304 1.90531 1.15186 1.87361 1.58794 1.20062 0.93099 0.85798 1.09165 1.22386 0.93795 0.97053 1.06977 1.18610 0.93545 0.93492 1.08773 1.20558 0.96891 0.92710 0.94444 1.20855 0.97237 0.94860 1.06768 1.17325 0.94088 0.76801 1.02340 1.91477 1.97434 1.29964 1.93016 1.19868 0.98966 0.90355 1.10272 1.18228 0.87947 0.90629 1.03548 1.44002 1.06792 1.03987 1.59467 1.22214 0.76837 1.04024 1.03685 0.91858 0.85190 0.92724 0.90065 0.79440 0.81723 0.81760 0.83897 0.90966 0.89726 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.47 8.01 127.77 1.02 2.50 16 2 N -0.43 -22.02 3.01 -663.30 -1.99 -24.02 16 3 C -0.39 -21.57 8.89 84.11 0.75 -20.82 16 4 H 0.07 4.31 7.80 -2.92 -0.02 4.29 16 5 C 0.05 2.45 5.29 84.96 0.45 2.90 16 6 N -0.83 -39.69 10.53 21.68 0.23 -39.46 16 7 Si 0.96 40.39 29.69 68.60 2.04 42.42 16 8 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 9 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 11 C 0.48 24.86 7.58 86.49 0.66 25.51 16 12 O -0.63 -35.79 14.33 -4.40 -0.06 -35.85 16 13 C 0.03 1.21 6.76 39.87 0.27 1.48 16 14 C -0.18 -6.32 8.77 22.57 0.20 -6.13 16 15 C -0.14 -4.36 6.16 -21.35 -0.13 -4.49 16 16 C -0.03 -0.64 10.06 22.31 0.22 -0.41 16 17 C -0.18 -3.71 9.94 22.06 0.22 -3.49 16 18 C 0.12 2.80 7.29 22.42 0.16 2.96 16 19 F -0.14 -3.31 17.26 44.97 0.78 -2.54 16 20 C -0.17 -4.66 9.97 22.41 0.22 -4.44 16 21 C 0.11 3.47 6.81 39.12 0.27 3.74 16 22 N -0.46 -17.26 3.23 -526.28 -1.70 -18.96 16 23 C 0.07 2.37 10.66 127.77 1.36 3.74 16 24 H 0.06 2.37 6.16 -2.39 -0.01 2.36 16 25 H 0.13 5.97 4.77 -2.39 -0.01 5.96 16 26 H 0.05 2.16 6.77 -2.39 -0.02 2.14 16 27 H 0.29 12.56 8.31 -92.71 -0.77 11.79 16 28 H 0.19 6.09 3.88 -2.91 -0.01 6.08 16 29 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 3.27 6.00 -2.39 -0.01 3.25 16 34 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -64.27 289.68 6.11 -58.16 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.15 Total: 17.19 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.67 Total: 3.05 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -3.46 Total: -82.43 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.06 Total: -35.85 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.04 Total: 42.42 kcal Total: -64.27 6.11 -58.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259754101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.582 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds