Wall clock time and date at job start Mon Mar 30 2020 01:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86796 * 119.99979 * 2 1 4 4 H 1.48497 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47448 * 300.00838 * 3 2 1 6 6 H 1.48505 * 109.46810 * 60.00722 * 3 2 1 7 7 C 1.39947 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99446 * 197.85580 * 7 2 1 9 9 C 1.41396 * 120.00170 * 17.85282 * 7 2 1 10 10 C 1.40713 * 120.24227 * 204.38133 * 9 7 2 11 11 C 1.37616 * 119.74830 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24074 * 0.02562 * 11 10 9 13 13 C 1.50710 * 119.74550 * 179.97438 * 12 11 10 14 14 O 1.45202 * 109.47033 * 89.99397 * 13 12 11 15 15 C 1.34225 * 116.99612 * 179.97438 * 14 13 12 16 16 O 1.20824 * 120.00537 * 0.27920 * 15 14 13 17 17 C 1.50706 * 119.99828 * 180.02562 * 15 14 13 18 18 H 1.08999 * 110.27351 * 305.63727 * 17 15 14 19 19 C 1.54949 * 110.30831 * 67.83450 * 17 15 14 20 20 C 1.55305 * 100.94098 * 155.36189 * 19 17 15 21 21 C 1.54385 * 102.25287 * 325.86478 * 20 19 17 22 22 O 1.43243 * 107.58832 * 21.35811 * 21 20 19 23 23 C 1.38633 * 120.50511 * 0.24840 * 12 11 10 24 24 C 1.37615 * 120.24629 * 359.45203 * 23 12 11 25 25 H 0.96997 * 119.99883 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.12546 * 0.04317 * 10 9 7 27 27 H 1.07997 * 119.88255 * 179.97438 * 11 10 9 28 28 H 1.09000 * 109.46977 * 330.00072 * 13 12 11 29 29 H 1.08998 * 109.47175 * 209.99742 * 13 12 11 30 30 H 1.09002 * 111.12324 * 273.27546 * 19 17 15 31 31 H 1.08997 * 111.12838 * 37.44103 * 19 17 15 32 32 H 1.08997 * 110.84683 * 207.67966 * 20 19 17 33 33 H 1.08992 * 111.02468 * 84.13332 * 20 19 17 34 34 H 1.08998 * 109.82951 * 261.84565 * 21 20 19 35 35 H 1.08994 * 109.82912 * 140.87027 * 21 20 19 36 36 H 1.08002 * 119.87496 * 179.70485 * 23 12 11 37 37 H 1.07999 * 120.12635 * 180.27049 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8834 2.3965 -1.2123 6 1 1.8836 2.3963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2863 9 6 1.3520 -2.4069 -0.3765 10 6 1.8258 -3.6499 0.0822 11 6 1.1799 -4.8066 -0.2904 12 6 0.0667 -4.7501 -1.1149 13 6 -0.6317 -6.0238 -1.5165 14 8 -1.6655 -6.3357 -0.5458 15 6 -2.3865 -7.4475 -0.7594 16 8 -2.1579 -8.1400 -1.7228 17 6 -3.4773 -7.8352 0.2054 18 1 -3.0820 -7.8916 1.2196 19 6 -4.6433 -6.8171 0.1362 20 6 -5.8262 -7.6891 0.6386 21 6 -5.4641 -9.0836 0.0836 22 8 -4.0553 -9.0940 -0.1751 23 6 -0.4054 -3.5314 -1.5773 24 6 0.2211 -2.3617 -1.2125 25 1 -0.4850 0.8400 0.0004 26 1 2.6929 -3.6961 0.7245 27 1 1.5419 -5.7618 0.0600 28 1 0.0911 -6.8388 -1.5520 29 1 -1.0836 -5.8957 -2.5001 30 1 -4.4674 -5.9725 0.8024 31 1 -4.8105 -6.4801 -0.8868 32 1 -6.7705 -7.3391 0.2218 33 1 -5.8664 -7.7036 1.7277 34 1 -6.0112 -9.2670 -0.8411 35 1 -5.7107 -9.8495 0.8188 36 1 -1.2705 -3.4996 -2.2230 37 1 -0.1510 -1.4131 -1.5704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271773311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:41 Heat of formation + Delta-G solvation = -119.994911 kcal Electronic energy + Delta-G solvation = -20395.605264 eV Core-core repulsion = 17102.376369 eV Total energy + Delta-G solvation = -3293.228895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.50136 -39.00113 -37.63347 -35.96119 -33.89195 -32.43592 -30.98372 -30.02429 -29.37996 -27.19748 -24.49593 -23.34870 -21.94857 -21.10846 -20.59661 -20.05773 -17.90106 -17.41041 -16.84688 -16.46804 -15.88808 -15.46603 -15.35678 -14.66678 -14.16137 -13.90098 -13.68348 -13.48936 -13.00437 -12.56627 -12.31312 -12.08487 -12.04893 -11.83627 -11.76475 -11.63572 -11.20699 -11.17584 -11.00389 -10.84493 -10.46143 -10.29474 -10.16551 -9.79579 -9.63629 -9.48680 -9.24096 -7.58320 -7.47009 -6.88854 -4.48321 2.30896 2.40706 2.83199 2.98953 3.01797 3.06744 3.18309 3.82440 3.84570 4.19676 4.47230 4.58320 4.69434 4.88256 4.94018 5.16130 5.42562 5.44744 5.53658 5.60130 5.66085 5.66306 5.69489 5.81888 6.05637 6.23864 6.29679 6.64250 6.82497 6.86265 6.95681 7.16512 7.24671 7.49944 7.72231 7.94158 7.99186 8.08039 8.17384 8.52172 8.76769 8.84889 10.04886 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.032057 B = 0.003347 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.245594 B = 8362.499975 C = 8900.058161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.236 4.236 13 C 0.136 3.864 14 O -0.347 6.347 15 C 0.453 3.547 16 O -0.502 6.502 17 C 0.089 3.911 18 H 0.110 0.890 19 C -0.142 4.142 20 C -0.155 4.155 21 C 0.049 3.951 22 O -0.358 6.358 23 C -0.075 4.075 24 C -0.170 4.170 25 H 0.282 0.718 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 -8.322 1.796 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.249 4.249 11 C -0.082 4.082 12 C -0.238 4.238 13 C 0.065 3.935 14 O -0.264 6.264 15 C 0.295 3.705 16 O -0.390 6.390 17 C 0.030 3.970 18 H 0.128 0.872 19 C -0.180 4.180 20 C -0.192 4.192 21 C -0.028 4.028 22 O -0.277 6.277 23 C -0.094 4.094 24 C -0.190 4.190 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.484 -8.514 1.410 12.823 hybrid contribution 0.202 0.860 0.045 0.885 sum -9.281 -7.654 1.455 12.118 Atomic orbital electron populations 1.69836 1.07686 1.29427 1.33977 1.25977 0.94763 1.01561 0.92111 0.86233 0.81040 0.80672 0.78673 1.18278 1.19582 1.19870 1.19716 0.98260 0.91231 1.39201 0.90115 1.17691 0.90786 0.92087 0.87877 1.20966 1.04132 0.92665 1.07170 1.20402 0.95082 0.96688 0.95989 1.18677 1.01270 0.91902 1.11906 1.21765 0.86411 0.96008 0.89352 1.86699 1.45971 1.40527 1.53165 1.23360 0.82135 0.79628 0.85368 1.90638 1.66781 1.51905 1.29688 1.22408 0.92531 0.85296 0.96745 0.87240 1.23215 0.92390 0.98358 1.04007 1.23149 0.99386 0.94607 1.02082 1.23233 0.81574 0.97353 1.00601 1.88510 1.20948 1.31987 1.86275 1.20536 0.97687 0.92448 0.98714 1.21289 0.99705 0.96640 1.01342 0.90687 0.88691 0.89254 0.92000 0.91998 0.87936 0.89696 0.89424 0.89864 0.90950 0.90780 0.89330 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.58 10.95 55.55 0.61 -18.97 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.95 29.60 -169.99 -5.03 12.92 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -11.70 9.05 -37.74 -0.34 -12.04 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.12 3.08 5.57 -106.83 -0.60 2.48 16 10 C -0.23 -5.53 9.80 -38.87 -0.38 -5.92 16 11 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 12 C -0.24 -5.21 5.54 -104.32 -0.58 -5.79 16 13 C 0.14 2.64 5.58 36.01 0.20 2.84 16 14 O -0.35 -6.47 10.20 -39.25 -0.40 -6.87 16 15 C 0.45 7.82 7.30 36.01 0.26 8.08 16 16 O -0.50 -10.07 16.30 -25.32 -0.41 -10.49 16 17 C 0.09 1.18 3.97 -26.85 -0.11 1.07 16 18 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 19 C -0.14 -1.49 6.56 -24.48 -0.16 -1.65 16 20 C -0.15 -1.20 7.02 -24.78 -0.17 -1.37 16 21 C 0.05 0.46 7.79 37.88 0.30 0.75 16 22 O -0.36 -4.99 10.61 -54.61 -0.58 -5.56 16 23 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 24 C -0.17 -4.33 8.70 -38.88 -0.34 -4.66 16 25 H 0.28 6.34 8.30 -40.82 -0.34 6.01 16 26 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 29 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.94 8.05 -51.93 -0.42 0.53 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -29.49 319.93 -8.70 -38.19 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.93 Total: 4.36 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -2.77 Total: -18.40 kcal Atomic # 7 Polarization: -19.58 SS G_CDS: 0.61 Total: -18.97 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.39 Total: -22.92 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.49 -8.70 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271773311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.801 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds