Wall clock time and date at job start Mon Mar 30 2020 01:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86796 * 119.99979 * 2 1 4 4 H 1.48497 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47448 * 300.00838 * 3 2 1 6 6 H 1.48505 * 109.46810 * 60.00722 * 3 2 1 7 7 C 1.39947 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99446 * 197.85580 * 7 2 1 9 9 C 1.41396 * 120.00170 * 17.85282 * 7 2 1 10 10 C 1.40713 * 120.24227 * 204.38133 * 9 7 2 11 11 C 1.37616 * 119.74830 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24074 * 0.02562 * 11 10 9 13 13 C 1.50710 * 119.74550 * 179.97438 * 12 11 10 14 14 O 1.45202 * 109.47033 * 89.99397 * 13 12 11 15 15 C 1.34225 * 116.99612 * 179.97438 * 14 13 12 16 16 O 1.20824 * 120.00537 * 0.27920 * 15 14 13 17 17 C 1.50706 * 119.99828 * 180.02562 * 15 14 13 18 18 H 1.08999 * 110.27351 * 305.63727 * 17 15 14 19 19 C 1.54949 * 110.30831 * 67.83450 * 17 15 14 20 20 C 1.55305 * 100.94098 * 155.36189 * 19 17 15 21 21 C 1.54385 * 102.25287 * 325.86478 * 20 19 17 22 22 O 1.43243 * 107.58832 * 21.35811 * 21 20 19 23 23 C 1.38633 * 120.50511 * 0.24840 * 12 11 10 24 24 C 1.37615 * 120.24629 * 359.45203 * 23 12 11 25 25 H 0.96997 * 119.99883 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.12546 * 0.04317 * 10 9 7 27 27 H 1.07997 * 119.88255 * 179.97438 * 11 10 9 28 28 H 1.09000 * 109.46977 * 330.00072 * 13 12 11 29 29 H 1.08998 * 109.47175 * 209.99742 * 13 12 11 30 30 H 1.09002 * 111.12324 * 273.27546 * 19 17 15 31 31 H 1.08997 * 111.12838 * 37.44103 * 19 17 15 32 32 H 1.08997 * 110.84683 * 207.67966 * 20 19 17 33 33 H 1.08992 * 111.02468 * 84.13332 * 20 19 17 34 34 H 1.08998 * 109.82951 * 261.84565 * 21 20 19 35 35 H 1.08994 * 109.82912 * 140.87027 * 21 20 19 36 36 H 1.08002 * 119.87496 * 179.70485 * 23 12 11 37 37 H 1.07999 * 120.12635 * 180.27049 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8834 2.3965 -1.2123 6 1 1.8836 2.3963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2863 9 6 1.3520 -2.4069 -0.3765 10 6 1.8258 -3.6499 0.0822 11 6 1.1799 -4.8066 -0.2904 12 6 0.0667 -4.7501 -1.1149 13 6 -0.6317 -6.0238 -1.5165 14 8 -1.6655 -6.3357 -0.5458 15 6 -2.3865 -7.4475 -0.7594 16 8 -2.1579 -8.1400 -1.7228 17 6 -3.4773 -7.8352 0.2054 18 1 -3.0820 -7.8916 1.2196 19 6 -4.6433 -6.8171 0.1362 20 6 -5.8262 -7.6891 0.6386 21 6 -5.4641 -9.0836 0.0836 22 8 -4.0553 -9.0940 -0.1751 23 6 -0.4054 -3.5314 -1.5773 24 6 0.2211 -2.3617 -1.2125 25 1 -0.4850 0.8400 0.0004 26 1 2.6929 -3.6961 0.7245 27 1 1.5419 -5.7618 0.0600 28 1 0.0911 -6.8388 -1.5520 29 1 -1.0836 -5.8957 -2.5001 30 1 -4.4674 -5.9725 0.8024 31 1 -4.8105 -6.4801 -0.8868 32 1 -6.7705 -7.3391 0.2218 33 1 -5.8664 -7.7036 1.7277 34 1 -6.0112 -9.2670 -0.8411 35 1 -5.7107 -9.8495 0.8188 36 1 -1.2705 -3.4996 -2.2230 37 1 -0.1510 -1.4131 -1.5704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271773311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:41 Heat of formation + Delta-G solvation = -134.911312 kcal Electronic energy + Delta-G solvation = -20396.252087 eV Core-core repulsion = 17102.376369 eV Total energy + Delta-G solvation = -3293.875719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77537 -40.12588 -39.38642 -37.47259 -35.69766 -33.30465 -32.64044 -31.26744 -31.04286 -28.88712 -25.94810 -24.67601 -22.96581 -22.67141 -21.96920 -21.72953 -19.28292 -19.09130 -18.04182 -17.75761 -17.24464 -17.00761 -16.50131 -15.99932 -15.66861 -15.50638 -15.13061 -14.48902 -14.33724 -14.12603 -13.86713 -13.82349 -13.54390 -13.08817 -12.84980 -12.81233 -12.68558 -12.60614 -12.33249 -12.10139 -11.92193 -11.74587 -11.60521 -11.41116 -11.30100 -11.05047 -10.66776 -9.44816 -9.34220 -8.69410 -6.40180 0.68267 1.05170 1.10458 1.36556 1.40614 1.54644 1.69232 2.19719 2.66528 2.91935 3.37639 3.57541 3.76853 3.84109 4.02504 4.06567 4.07683 4.11277 4.28095 4.46152 4.48582 4.53698 4.69848 4.79184 4.88625 4.96634 5.00012 5.11654 5.16362 5.29312 5.37721 5.41479 5.64410 5.78817 5.87217 6.05097 6.13390 6.31106 6.63689 6.68720 6.88026 6.96303 8.27383 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.032057 B = 0.003347 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.245594 B = 8362.499975 C = 8900.058161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.492 4.492 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.244 4.244 11 C -0.065 4.065 12 C -0.231 4.231 13 C 0.140 3.860 14 O -0.353 6.353 15 C 0.453 3.547 16 O -0.535 6.535 17 C 0.089 3.911 18 H 0.132 0.868 19 C -0.143 4.143 20 C -0.141 4.141 21 C 0.039 3.961 22 O -0.389 6.389 23 C -0.079 4.079 24 C -0.193 4.193 25 H 0.291 0.709 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 -8.674 2.594 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.264 4.264 11 C -0.083 4.083 12 C -0.233 4.233 13 C 0.068 3.932 14 O -0.270 6.270 15 C 0.297 3.703 16 O -0.425 6.425 17 C 0.031 3.969 18 H 0.150 0.850 19 C -0.181 4.181 20 C -0.179 4.179 21 C -0.037 4.037 22 O -0.309 6.309 23 C -0.097 4.097 24 C -0.212 4.212 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.135 0.865 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.565 -8.885 2.217 13.982 hybrid contribution 0.443 0.798 -0.227 0.940 sum -10.122 -8.087 1.990 13.108 Atomic orbital electron populations 1.69874 1.09073 1.30848 1.34333 1.26815 0.95511 1.04664 0.91064 0.85123 0.79422 0.75952 0.79031 1.18139 1.18842 1.18907 1.19957 0.98523 0.92410 1.41125 0.90243 1.18043 0.91544 0.93176 0.88647 1.21171 1.04759 0.92809 1.07650 1.20709 0.94776 0.97326 0.95484 1.18955 1.01067 0.92630 1.10619 1.21611 0.86959 0.94963 0.89683 1.86663 1.45998 1.41521 1.52800 1.24257 0.82152 0.78380 0.85559 1.90618 1.67809 1.52699 1.31367 1.22615 0.92101 0.86149 0.96037 0.85047 1.23269 0.92493 0.98441 1.03856 1.23155 0.98841 0.92586 1.03289 1.23522 0.79394 0.99111 1.01643 1.88481 1.23424 1.32217 1.86738 1.20765 0.97991 0.92279 0.98701 1.21259 1.00551 0.96898 1.02495 0.89828 0.87888 0.86503 0.91026 0.91390 0.87006 0.90827 0.87512 0.87870 0.90637 0.88696 0.87532 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.44 10.95 21.83 0.24 -41.20 16 2 C 0.04 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 36.88 29.60 68.60 2.03 38.91 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 5 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.49 -25.92 9.05 23.46 0.21 -25.71 16 8 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 9 C 0.09 4.72 5.57 -21.29 -0.12 4.60 16 10 C -0.24 -11.88 9.80 22.73 0.22 -11.66 16 11 C -0.06 -2.84 9.67 22.22 0.21 -2.63 16 12 C -0.23 -10.04 5.54 -19.67 -0.11 -10.15 16 13 C 0.14 5.25 5.58 71.24 0.40 5.65 16 14 O -0.35 -12.75 10.20 -51.37 -0.52 -13.27 16 15 C 0.45 15.15 7.30 71.24 0.52 15.67 16 16 O -0.54 -21.22 16.30 28.25 0.46 -20.76 16 17 C 0.09 2.21 3.97 30.52 0.12 2.33 16 18 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 19 C -0.14 -2.68 6.56 32.05 0.21 -2.47 16 20 C -0.14 -1.72 7.02 31.86 0.22 -1.50 16 21 C 0.04 0.63 7.79 72.45 0.56 1.19 16 22 O -0.39 -10.21 10.61 -130.45 -1.38 -11.59 16 23 C -0.08 -3.66 9.67 22.22 0.21 -3.44 16 24 C -0.19 -10.03 8.70 22.73 0.20 -9.83 16 25 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 26 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 27 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 28 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 29 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 30 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.54 8.05 -2.39 -0.02 1.52 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.11 5.68 6.16 -2.91 -0.02 5.66 16 Total: -1.00 -64.62 319.93 5.20 -59.42 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 1.07 Total: 24.24 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 3.31 Total: -35.76 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.24 Total: -41.20 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.45 Total: -45.62 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -64.62 5.20 -59.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271773311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.492 kcal (2) G-P(sol) polarization free energy of solvation -64.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds