Wall clock time and date at job start Mon Mar 30 2020 01:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00363 * 2 1 4 4 H 1.48500 * 109.47044 * 267.60758 * 3 2 1 5 5 H 1.48497 * 109.47139 * 147.60378 * 3 2 1 6 6 H 1.48497 * 109.46783 * 27.60427 * 3 2 1 7 7 C 1.39943 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00353 * 162.72297 * 7 2 1 9 9 C 1.41401 * 120.00023 * 342.71473 * 7 2 1 10 10 C 1.40710 * 120.24149 * 335.12022 * 9 7 2 11 11 C 1.37620 * 119.74209 * 179.67627 * 10 9 7 12 12 C 1.38637 * 120.24924 * 0.62072 * 11 10 9 13 13 C 1.50696 * 119.75180 * 179.69470 * 12 11 10 14 14 O 1.45200 * 109.47204 * 269.97971 * 13 12 11 15 15 C 1.34228 * 116.99824 * 179.97438 * 14 13 12 16 16 O 1.20824 * 120.00365 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00013 * 180.02562 * 15 14 13 18 18 H 1.09008 * 110.43458 * 298.91144 * 17 15 14 19 19 C 1.54807 * 110.49116 * 176.21867 * 17 15 14 20 20 C 1.54997 * 102.09370 * 220.44078 * 19 17 15 21 21 O 1.44383 * 103.48739 * 37.02499 * 20 19 17 22 22 C 1.43740 * 106.97724 * 319.93682 * 21 20 19 23 23 C 1.38643 * 120.49687 * 359.67905 * 12 11 10 24 24 C 1.37614 * 120.24779 * 359.97438 * 23 12 11 25 25 H 0.97003 * 119.99749 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.12951 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.87871 * 180.32049 * 11 10 9 28 28 H 1.08992 * 109.46943 * 29.98076 * 13 12 11 29 29 H 1.09002 * 109.47094 * 149.97995 * 13 12 11 30 30 H 1.08997 * 110.90573 * 338.64312 * 19 17 15 31 31 H 1.09005 * 110.90516 * 102.24195 * 19 17 15 32 32 H 1.09000 * 110.61728 * 278.52087 * 20 19 17 33 33 H 1.09003 * 110.61509 * 155.52161 * 20 19 17 34 34 H 1.09000 * 109.87670 * 267.09668 * 22 21 20 35 35 H 1.09000 * 109.87778 * 145.93960 * 22 21 20 36 36 H 1.08004 * 119.87117 * 180.02562 * 23 12 11 37 37 H 1.08002 * 120.12578 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.5405 2.0171 -1.3989 5 1 3.5136 1.4552 0.7501 6 1 1.4154 2.6667 0.6487 7 6 2.0079 -1.2120 -0.0005 8 1 3.0514 -1.2331 -0.2783 9 6 1.3488 -2.4090 0.3628 10 6 0.2166 -2.3694 1.1973 11 6 -0.4210 -3.5402 1.5390 12 6 0.0559 -4.7563 1.0748 13 6 -0.6469 -6.0320 1.4616 14 8 -0.0703 -6.5491 2.6898 15 6 -0.5882 -7.6891 3.1734 16 8 -1.4937 -8.2366 2.5901 17 6 -0.0411 -8.2856 4.4446 18 1 1.0130 -8.5359 4.3246 19 6 -0.8557 -9.5380 4.8499 20 6 -0.9602 -9.3738 6.3876 21 8 -1.1139 -7.9491 6.5645 22 6 -0.2335 -7.3121 5.6236 23 6 1.1743 -4.8077 0.2571 24 6 1.8235 -3.6490 -0.1032 25 1 -0.4850 0.8401 0.0004 26 1 -0.1536 -1.4235 1.5643 27 1 -1.2933 -3.5119 2.1752 28 1 -1.7071 -5.8307 1.6145 29 1 -0.5279 -6.7679 0.6663 30 1 -1.8435 -9.5254 4.3893 31 1 -0.3193 -10.4512 4.5918 32 1 -0.0501 -9.7251 6.8739 33 1 -1.8313 -9.9045 6.7719 34 1 0.7275 -7.1070 6.0955 35 1 -0.6801 -6.3833 5.2684 36 1 1.5369 -5.7606 -0.0992 37 1 2.6943 -3.6913 -0.7406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271850189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:47 Heat of formation + Delta-G solvation = -122.630071 kcal Electronic energy + Delta-G solvation = -20397.939276 eV Core-core repulsion = 17104.596112 eV Total energy + Delta-G solvation = -3293.343164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64864 -38.97250 -37.67185 -36.12746 -33.89505 -32.58415 -30.84953 -29.63819 -29.38125 -27.22584 -24.38994 -23.41728 -22.53787 -21.11535 -20.22031 -20.06694 -17.64439 -17.40749 -16.93804 -16.76782 -15.69814 -15.63949 -15.30970 -14.95398 -14.29440 -13.87514 -13.76795 -13.12759 -12.92156 -12.53221 -12.47921 -12.29323 -12.05618 -11.70527 -11.60134 -11.56498 -11.27462 -11.16945 -11.13024 -10.69382 -10.65292 -10.37674 -10.20714 -9.82938 -9.71035 -9.49274 -9.23710 -7.58726 -7.48011 -6.88694 -4.48626 2.31947 2.39100 2.91424 2.98492 3.01417 3.06071 3.29848 3.69598 3.84280 4.11050 4.47689 4.61346 4.76690 4.84405 4.99046 5.13365 5.42003 5.46546 5.49561 5.58298 5.63700 5.67893 5.68147 5.85952 6.05428 6.22335 6.28958 6.57412 6.78130 6.85173 6.95555 7.15673 7.24064 7.49281 7.71065 7.93591 7.96618 7.98819 8.16977 8.51637 8.76460 8.84411 10.05327 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033750 B = 0.003269 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.439649 B = 8564.248730 C = 8926.123927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.170 4.170 11 C -0.075 4.075 12 C -0.237 4.237 13 C 0.136 3.864 14 O -0.348 6.348 15 C 0.464 3.536 16 O -0.515 6.515 17 C -0.122 4.122 18 H 0.120 0.880 19 C -0.145 4.145 20 C 0.046 3.954 21 O -0.375 6.375 22 C 0.059 3.941 23 C -0.063 4.063 24 C -0.230 4.230 25 H 0.283 0.717 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -11.770 8.608 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.183 1.183 6 H -0.200 1.200 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.238 4.238 13 C 0.064 3.936 14 O -0.265 6.265 15 C 0.307 3.693 16 O -0.404 6.404 17 C -0.141 4.141 18 H 0.138 0.862 19 C -0.182 4.182 20 C -0.030 4.030 21 O -0.294 6.294 22 C -0.018 4.018 23 C -0.082 4.082 24 C -0.250 4.250 25 H 0.094 0.906 26 H 0.138 0.862 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.410 -11.611 8.525 14.410 hybrid contribution 0.433 0.634 -0.450 0.890 sum 0.022 -10.977 8.075 13.627 Atomic orbital electron populations 1.69818 1.07687 1.29578 1.33974 1.25977 0.94776 1.01566 0.92067 0.86283 0.80618 0.80256 0.79427 1.19336 1.18339 1.19988 1.19669 0.98037 0.91179 1.39602 0.90174 1.17686 0.90812 0.92076 0.87767 1.21300 0.99356 0.96728 1.01515 1.20543 0.98080 0.92567 0.98177 1.18657 1.03183 0.91446 1.10555 1.21752 0.96174 0.93822 0.81866 1.86703 1.59979 1.37285 1.42503 1.23220 0.80559 0.79608 0.85946 1.90618 1.28789 1.61417 1.59606 1.22471 1.02880 0.96741 0.92000 0.86159 1.23208 1.02460 0.96321 0.96231 1.23605 1.02144 0.82662 0.94616 1.88914 1.63905 1.18140 1.58435 1.23120 0.95453 0.95967 0.87228 1.20382 0.94265 0.96595 0.96939 1.20951 1.03832 0.92806 1.07409 0.90597 0.86232 0.89299 0.91930 0.92046 0.88432 0.89365 0.91801 0.88523 0.90593 0.88652 0.89336 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.73 10.95 55.55 0.61 -19.12 16 2 C 0.08 1.83 5.15 -17.34 -0.09 1.74 16 3 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -11.74 9.06 -37.74 -0.34 -12.09 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.12 3.11 5.57 -106.83 -0.60 2.51 16 10 C -0.17 -4.32 8.69 -38.87 -0.34 -4.66 16 11 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 12 C -0.24 -5.20 5.54 -104.33 -0.58 -5.78 16 13 C 0.14 2.57 5.58 36.00 0.20 2.77 16 14 O -0.35 -6.19 10.12 -39.25 -0.40 -6.59 16 15 C 0.46 7.25 7.06 36.01 0.25 7.50 16 16 O -0.51 -9.18 15.21 -18.75 -0.29 -9.46 16 17 C -0.12 -1.38 3.55 -90.24 -0.32 -1.70 16 18 H 0.12 1.09 8.14 -51.92 -0.42 0.67 16 19 C -0.14 -1.41 6.50 -24.72 -0.16 -1.57 16 20 C 0.05 0.41 7.72 38.21 0.29 0.70 16 21 O -0.38 -4.60 11.52 -35.23 -0.41 -5.00 16 22 C 0.06 0.68 7.34 37.74 0.28 0.96 16 23 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 24 C -0.23 -5.54 9.80 -38.88 -0.38 -5.92 16 25 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 26 H 0.12 3.13 6.17 -52.49 -0.32 2.80 16 27 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 28 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 29 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 30 H 0.10 1.14 6.93 -51.93 -0.36 0.78 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.23 7.64 -51.93 -0.40 0.83 16 36 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -28.70 317.58 -8.12 -36.82 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.85 Total: 5.03 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.54 Total: -19.44 kcal Atomic # 7 Polarization: -19.73 SS G_CDS: 0.61 Total: -19.12 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -1.09 Total: -21.06 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.70 -8.12 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271850189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.809 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds