Wall clock time and date at job start Mon Mar 30 2020 01:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00363 * 2 1 4 4 H 1.48500 * 109.47044 * 267.60758 * 3 2 1 5 5 H 1.48497 * 109.47139 * 147.60378 * 3 2 1 6 6 H 1.48497 * 109.46783 * 27.60427 * 3 2 1 7 7 C 1.39943 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00353 * 162.72297 * 7 2 1 9 9 C 1.41401 * 120.00023 * 342.71473 * 7 2 1 10 10 C 1.40710 * 120.24149 * 335.12022 * 9 7 2 11 11 C 1.37620 * 119.74209 * 179.67627 * 10 9 7 12 12 C 1.38637 * 120.24924 * 0.62072 * 11 10 9 13 13 C 1.50696 * 119.75180 * 179.69470 * 12 11 10 14 14 O 1.45200 * 109.47204 * 269.97971 * 13 12 11 15 15 C 1.34228 * 116.99824 * 179.97438 * 14 13 12 16 16 O 1.20824 * 120.00365 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00013 * 180.02562 * 15 14 13 18 18 H 1.09008 * 110.43458 * 298.91144 * 17 15 14 19 19 C 1.54807 * 110.49116 * 176.21867 * 17 15 14 20 20 C 1.54997 * 102.09370 * 220.44078 * 19 17 15 21 21 O 1.44383 * 103.48739 * 37.02499 * 20 19 17 22 22 C 1.43740 * 106.97724 * 319.93682 * 21 20 19 23 23 C 1.38643 * 120.49687 * 359.67905 * 12 11 10 24 24 C 1.37614 * 120.24779 * 359.97438 * 23 12 11 25 25 H 0.97003 * 119.99749 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.12951 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.87871 * 180.32049 * 11 10 9 28 28 H 1.08992 * 109.46943 * 29.98076 * 13 12 11 29 29 H 1.09002 * 109.47094 * 149.97995 * 13 12 11 30 30 H 1.08997 * 110.90573 * 338.64312 * 19 17 15 31 31 H 1.09005 * 110.90516 * 102.24195 * 19 17 15 32 32 H 1.09000 * 110.61728 * 278.52087 * 20 19 17 33 33 H 1.09003 * 110.61509 * 155.52161 * 20 19 17 34 34 H 1.09000 * 109.87670 * 267.09668 * 22 21 20 35 35 H 1.09000 * 109.87778 * 145.93960 * 22 21 20 36 36 H 1.08004 * 119.87117 * 180.02562 * 23 12 11 37 37 H 1.08002 * 120.12578 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.5405 2.0171 -1.3989 5 1 3.5136 1.4552 0.7501 6 1 1.4154 2.6667 0.6487 7 6 2.0079 -1.2120 -0.0005 8 1 3.0514 -1.2331 -0.2783 9 6 1.3488 -2.4090 0.3628 10 6 0.2166 -2.3694 1.1973 11 6 -0.4210 -3.5402 1.5390 12 6 0.0559 -4.7563 1.0748 13 6 -0.6469 -6.0320 1.4616 14 8 -0.0703 -6.5491 2.6898 15 6 -0.5882 -7.6891 3.1734 16 8 -1.4937 -8.2366 2.5901 17 6 -0.0411 -8.2856 4.4446 18 1 1.0130 -8.5359 4.3246 19 6 -0.8557 -9.5380 4.8499 20 6 -0.9602 -9.3738 6.3876 21 8 -1.1139 -7.9491 6.5645 22 6 -0.2335 -7.3121 5.6236 23 6 1.1743 -4.8077 0.2571 24 6 1.8235 -3.6490 -0.1032 25 1 -0.4850 0.8401 0.0004 26 1 -0.1536 -1.4235 1.5643 27 1 -1.2933 -3.5119 2.1752 28 1 -1.7071 -5.8307 1.6145 29 1 -0.5279 -6.7679 0.6663 30 1 -1.8435 -9.5254 4.3893 31 1 -0.3193 -10.4512 4.5918 32 1 -0.0501 -9.7251 6.8739 33 1 -1.8313 -9.9045 6.7719 34 1 0.7275 -7.1070 6.0955 35 1 -0.6801 -6.3833 5.2684 36 1 1.5369 -5.7606 -0.0992 37 1 2.6943 -3.6913 -0.7406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271850189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:47 Heat of formation + Delta-G solvation = -137.750058 kcal Electronic energy + Delta-G solvation = -20398.594928 eV Core-core repulsion = 17104.596112 eV Total energy + Delta-G solvation = -3293.998816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84082 -40.03115 -39.39134 -37.54855 -35.69819 -33.53768 -32.55796 -31.25128 -30.48240 -28.90991 -25.91927 -24.60910 -23.43319 -22.96792 -21.87657 -21.29464 -19.28209 -18.78553 -18.15103 -17.80195 -17.24004 -16.82110 -16.60000 -16.02879 -15.74350 -15.52912 -15.41888 -14.45367 -14.09564 -14.05155 -13.87722 -13.83912 -13.30680 -13.25076 -13.01721 -12.78302 -12.55471 -12.41727 -12.40202 -12.24116 -11.96221 -11.72354 -11.67413 -11.46456 -11.30547 -11.04414 -10.67000 -9.45373 -9.35062 -8.69834 -6.40880 0.71002 1.08290 1.10132 1.38224 1.42840 1.53439 1.86451 2.19104 2.69843 2.91858 3.24604 3.61160 3.76104 3.83176 4.04845 4.07239 4.08518 4.18354 4.30682 4.45791 4.49227 4.53356 4.66829 4.72753 4.82604 4.87263 4.99215 5.08586 5.10809 5.28646 5.37597 5.46813 5.63641 5.80586 5.86609 6.04397 6.12450 6.30489 6.62922 6.67156 6.87399 6.95727 8.27019 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033750 B = 0.003269 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.439649 B = 8564.248730 C = 8926.123927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.266 1.266 7 C -0.493 4.493 8 H 0.081 0.919 9 C 0.089 3.911 10 C -0.193 4.193 11 C -0.081 4.081 12 C -0.231 4.231 13 C 0.141 3.859 14 O -0.357 6.357 15 C 0.462 3.538 16 O -0.539 6.539 17 C -0.116 4.116 18 H 0.152 0.848 19 C -0.141 4.141 20 C 0.045 3.955 21 O -0.401 6.401 22 C 0.059 3.941 23 C -0.064 4.064 24 C -0.244 4.244 25 H 0.290 0.710 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -13.158 9.504 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.191 1.191 7 C -0.522 4.522 8 H 0.099 0.901 9 C 0.086 3.914 10 C -0.212 4.212 11 C -0.100 4.100 12 C -0.233 4.233 13 C 0.069 3.931 14 O -0.273 6.273 15 C 0.307 3.693 16 O -0.430 6.430 17 C -0.135 4.135 18 H 0.169 0.831 19 C -0.179 4.179 20 C -0.031 4.031 21 O -0.320 6.320 22 C -0.018 4.018 23 C -0.082 4.082 24 C -0.264 4.264 25 H 0.101 0.899 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.492 -13.026 9.428 16.087 hybrid contribution 0.065 0.877 -0.683 1.113 sum 0.557 -12.149 8.746 14.980 Atomic orbital electron populations 1.69869 1.09136 1.30893 1.34566 1.26836 0.95510 1.04753 0.91011 0.85170 0.79090 0.75578 0.79678 1.18530 1.18113 1.19071 1.19931 0.98367 0.92323 1.41537 0.90125 1.18041 0.91546 0.93250 0.88554 1.21264 1.00307 0.96923 1.02721 1.20769 0.98411 0.92546 0.98229 1.18968 1.02634 0.92296 1.09355 1.21543 0.95776 0.92834 0.82993 1.86668 1.60210 1.38578 1.41871 1.24074 0.80000 0.78481 0.86771 1.90612 1.29878 1.61823 1.60638 1.22673 1.04620 0.96976 0.89278 0.83066 1.23235 1.01247 0.96641 0.96767 1.23844 1.04155 0.81022 0.94039 1.88890 1.64441 1.20154 1.58548 1.23139 0.96147 0.95132 0.87424 1.20703 0.93910 0.97297 0.96319 1.21172 1.04505 0.92917 1.07781 0.89877 0.87844 0.87792 0.91804 0.90849 0.90820 0.86647 0.89123 0.87247 0.88322 0.90890 0.86296 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.24 10.95 21.83 0.24 -42.00 16 2 C 0.03 1.72 5.15 85.26 0.44 2.16 16 3 Si 0.98 37.19 29.59 68.60 2.03 39.22 16 4 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.49 -26.12 9.06 23.46 0.21 -25.91 16 8 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 9 C 0.09 4.75 5.57 -21.29 -0.12 4.63 16 10 C -0.19 -10.14 8.69 22.73 0.20 -9.94 16 11 C -0.08 -3.80 9.67 22.22 0.21 -3.59 16 12 C -0.23 -9.99 5.54 -19.67 -0.11 -10.10 16 13 C 0.14 5.16 5.58 71.23 0.40 5.56 16 14 O -0.36 -12.17 10.12 -51.40 -0.52 -12.69 16 15 C 0.46 13.71 7.06 71.24 0.50 14.22 16 16 O -0.54 -18.61 15.21 21.97 0.33 -18.27 16 17 C -0.12 -2.34 3.55 -10.55 -0.04 -2.38 16 18 H 0.15 2.14 8.14 -2.38 -0.02 2.12 16 19 C -0.14 -2.37 6.50 31.89 0.21 -2.16 16 20 C 0.05 0.66 7.72 72.67 0.56 1.22 16 21 O -0.40 -9.09 11.52 -148.98 -1.72 -10.81 16 22 C 0.06 1.24 7.34 72.36 0.53 1.77 16 23 C -0.06 -2.78 9.67 22.22 0.21 -2.57 16 24 C -0.24 -11.83 9.80 22.73 0.22 -11.60 16 25 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 26 H 0.10 5.67 6.17 -2.91 -0.02 5.66 16 27 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 28 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 29 H 0.07 2.51 8.07 -2.39 -0.02 2.50 16 30 H 0.07 1.62 6.93 -2.39 -0.02 1.60 16 31 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.84 7.64 -2.39 -0.02 1.83 16 36 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -63.36 317.58 4.87 -58.49 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 1.07 Total: 24.75 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 3.44 Total: -38.70 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.24 Total: -42.00 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.90 Total: -41.77 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -63.36 4.87 -58.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271850189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.260 kcal (2) G-P(sol) polarization free energy of solvation -63.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds