Wall clock time and date at job start Mon Mar 30 2020 01:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47305 * 274.51893 * 3 2 1 5 5 H 1.48502 * 109.47201 * 34.52396 * 3 2 1 6 6 H 1.48507 * 109.46854 * 154.52049 * 3 2 1 7 7 C 1.39941 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00148 * 162.20797 * 7 2 1 9 9 C 1.41397 * 120.00117 * 342.49004 * 7 2 1 10 10 C 1.40717 * 120.24284 * 334.66443 * 9 7 2 11 11 C 1.37618 * 119.74540 * 179.74021 * 10 9 7 12 12 C 1.38633 * 120.24562 * 0.53587 * 11 10 9 13 13 C 1.50699 * 119.75180 * 179.69646 * 12 11 10 14 14 O 1.45198 * 109.47350 * 270.02007 * 13 12 11 15 15 C 1.34229 * 117.00342 * 179.97438 * 14 13 12 16 16 O 1.20819 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99968 * 179.97438 * 15 14 13 18 18 H 1.09003 * 110.75209 * 59.30038 * 17 15 14 19 19 C 1.55304 * 110.84835 * 182.77141 * 17 15 14 20 20 C 1.55201 * 100.82780 * 152.17821 * 19 17 15 21 21 O 1.43644 * 105.26154 * 323.81921 * 20 19 17 22 22 C 1.43245 * 109.97166 * 24.28354 * 21 20 19 23 23 C 1.38634 * 120.50628 * 359.71271 * 12 11 10 24 24 C 1.37621 * 120.24664 * 0.02562 * 23 12 11 25 25 H 0.96999 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.12568 * 359.96793 * 10 9 7 27 27 H 1.07998 * 119.87988 * 180.27141 * 11 10 9 28 28 H 1.09007 * 109.46786 * 30.01544 * 13 12 11 29 29 H 1.09001 * 109.47558 * 150.01266 * 13 12 11 30 30 H 1.09004 * 111.12515 * 270.24614 * 19 17 15 31 31 H 1.09010 * 111.12292 * 34.40506 * 19 17 15 32 32 H 1.09002 * 110.37312 * 204.80078 * 20 19 17 33 33 H 1.09001 * 110.21297 * 82.74927 * 20 19 17 34 34 H 1.08998 * 109.82725 * 238.77656 * 22 21 20 35 35 H 1.09000 * 109.82862 * 117.80547 * 22 21 20 36 36 H 1.07998 * 119.87965 * 180.02562 * 23 12 11 37 37 H 1.08002 * 120.13117 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3942 2.1016 -1.3957 5 1 1.4907 2.6232 0.7935 6 1 3.5844 1.4145 0.6023 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2342 -0.2863 9 6 1.3502 -2.4083 0.3673 10 6 0.2266 -2.3679 1.2134 11 6 -0.4091 -3.5381 1.5606 12 6 0.0604 -4.7543 1.0891 13 6 -0.6401 -6.0294 1.4819 14 8 -0.0510 -6.5489 2.7031 15 6 -0.5653 -7.6887 3.1910 16 8 -1.4772 -8.2346 2.6163 17 6 -0.0046 -8.2881 4.4548 18 1 -0.0933 -7.5889 5.2863 19 6 -0.7057 -9.6335 4.7869 20 6 0.4196 -10.3640 5.5672 21 8 1.6419 -9.9742 4.9212 22 6 1.4641 -8.7193 4.2539 23 6 1.1697 -4.8065 0.2592 24 6 1.8179 -3.6485 -0.1054 25 1 -0.4850 0.8401 0.0004 26 1 -0.1378 -1.4219 1.5859 27 1 -1.2743 -3.5092 2.2063 28 1 -1.6984 -5.8267 1.6466 29 1 -0.5308 -6.7645 0.6845 30 1 -1.5835 -9.4749 5.4134 31 1 -0.9670 -10.1752 3.8777 32 1 0.2859 -11.4439 5.5039 33 1 0.4239 -10.0443 6.6093 34 1 1.6738 -8.8332 3.1903 35 1 2.1310 -7.9731 4.6857 36 1 1.5266 -5.7594 -0.1026 37 1 2.6821 -3.6914 -0.7516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271850191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:49 Heat of formation + Delta-G solvation = -123.074888 kcal Electronic energy + Delta-G solvation = -20341.872045 eV Core-core repulsion = 17048.509593 eV Total energy + Delta-G solvation = -3293.362453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64247 -39.02939 -37.68731 -36.15076 -33.90066 -32.63969 -30.85991 -29.70113 -29.39892 -27.24996 -24.42947 -23.32132 -22.55262 -21.12404 -20.32274 -20.08572 -17.77173 -17.42175 -16.96174 -16.77490 -15.79531 -15.49425 -15.28031 -14.79499 -14.27649 -13.89808 -13.74024 -13.55343 -12.92997 -12.64243 -12.45393 -12.31827 -12.06321 -11.75762 -11.65898 -11.53814 -11.29203 -11.22661 -11.13688 -10.67599 -10.66612 -10.33700 -10.21932 -9.76079 -9.71684 -9.50190 -9.24559 -7.59517 -7.48827 -6.89885 -4.49224 2.27387 2.37055 2.89441 2.97613 3.00989 3.06054 3.25609 3.64910 3.83820 4.02219 4.46821 4.60271 4.70617 4.80296 4.96042 5.09299 5.41303 5.46145 5.53393 5.57018 5.61916 5.64844 5.66462 5.83167 6.03734 6.21485 6.27764 6.66230 6.75590 6.84314 6.95003 7.14508 7.22771 7.48502 7.70035 7.92882 7.93610 7.97208 8.16180 8.50771 8.75692 8.83538 10.04497 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.037216 B = 0.003155 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.193053 B = 8873.170796 C = 9105.568360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.170 4.170 11 C -0.075 4.075 12 C -0.237 4.237 13 C 0.135 3.865 14 O -0.347 6.347 15 C 0.466 3.534 16 O -0.514 6.514 17 C -0.123 4.123 18 H 0.121 0.879 19 C -0.140 4.140 20 C 0.051 3.949 21 O -0.381 6.381 22 C 0.067 3.933 23 C -0.063 4.063 24 C -0.230 4.230 25 H 0.283 0.717 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 -11.273 8.647 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.239 4.239 13 C 0.064 3.936 14 O -0.264 6.264 15 C 0.309 3.691 16 O -0.404 6.404 17 C -0.142 4.142 18 H 0.139 0.861 19 C -0.178 4.178 20 C -0.025 4.025 21 O -0.300 6.300 22 C -0.010 4.010 23 C -0.081 4.081 24 C -0.249 4.249 25 H 0.094 0.906 26 H 0.136 0.864 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.937 -11.341 8.416 14.154 hybrid contribution -0.114 1.006 -0.179 1.028 sum -1.051 -10.335 8.237 13.258 Atomic orbital electron populations 1.69826 1.07697 1.29553 1.33989 1.25975 0.94766 1.01573 0.92054 0.86272 0.80793 0.80379 0.79183 1.19445 1.19918 1.18271 1.19679 0.98204 0.91192 1.39421 0.90133 1.17691 0.90718 0.92095 0.87801 1.21274 0.99504 0.96672 1.01443 1.20529 0.98090 0.92581 0.98164 1.18649 1.03515 0.91425 1.10277 1.21762 0.95980 0.93826 0.82063 1.86716 1.59613 1.37197 1.42846 1.23099 0.80790 0.79593 0.85642 1.90631 1.28614 1.61469 1.59658 1.22639 0.97281 0.98788 0.95485 0.86060 1.23304 0.98668 0.93493 1.02319 1.23463 0.82801 1.00102 0.96178 1.88430 1.33662 1.37706 1.70233 1.23029 0.93269 0.86074 0.98598 1.20388 0.94280 0.96633 0.96846 1.20962 1.03963 0.92814 1.07204 0.90623 0.86351 0.89344 0.91935 0.91997 0.89019 0.88797 0.89233 0.91751 0.90523 0.89558 0.89283 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.67 11.00 55.55 0.61 -19.06 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.12 3.11 5.57 -106.82 -0.59 2.52 16 10 C -0.17 -4.30 8.69 -38.87 -0.34 -4.64 16 11 C -0.07 -1.73 9.67 -39.66 -0.38 -2.11 16 12 C -0.24 -5.18 5.54 -104.33 -0.58 -5.76 16 13 C 0.14 2.54 5.58 36.01 0.20 2.74 16 14 O -0.35 -6.12 10.20 -39.26 -0.40 -6.52 16 15 C 0.47 7.15 7.13 36.01 0.26 7.41 16 16 O -0.51 -8.98 15.47 -18.74 -0.29 -9.27 16 17 C -0.12 -1.38 3.49 -89.83 -0.31 -1.70 16 18 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.14 -1.34 6.28 -24.34 -0.15 -1.49 16 20 C 0.05 0.44 7.78 38.32 0.30 0.74 16 21 O -0.38 -4.47 11.36 -35.23 -0.40 -4.87 16 22 C 0.07 0.76 7.40 37.88 0.28 1.04 16 23 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 24 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 25 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 26 H 0.12 3.08 6.22 -52.49 -0.33 2.75 16 27 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 29 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.03 7.42 -51.92 -0.39 0.64 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.93 7.81 -51.93 -0.41 0.53 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 318.39 15.07 4.80 4.80 Total: -1.00 -28.39 318.39 -8.12 -36.51 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.89 Total: 4.73 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -2.52 Total: -19.26 kcal Atomic # 7 Polarization: -19.67 SS G_CDS: 0.61 Total: -19.06 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.09 Total: -20.66 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.39 -8.12 -36.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271850191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.562 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds