Wall clock time and date at job start Mon Mar 30 2020 01:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47305 * 274.51893 * 3 2 1 5 5 H 1.48502 * 109.47201 * 34.52396 * 3 2 1 6 6 H 1.48507 * 109.46854 * 154.52049 * 3 2 1 7 7 C 1.39941 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00148 * 162.20797 * 7 2 1 9 9 C 1.41397 * 120.00117 * 342.49004 * 7 2 1 10 10 C 1.40717 * 120.24284 * 334.66443 * 9 7 2 11 11 C 1.37618 * 119.74540 * 179.74021 * 10 9 7 12 12 C 1.38633 * 120.24562 * 0.53587 * 11 10 9 13 13 C 1.50699 * 119.75180 * 179.69646 * 12 11 10 14 14 O 1.45198 * 109.47350 * 270.02007 * 13 12 11 15 15 C 1.34229 * 117.00342 * 179.97438 * 14 13 12 16 16 O 1.20819 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99968 * 179.97438 * 15 14 13 18 18 H 1.09003 * 110.75209 * 59.30038 * 17 15 14 19 19 C 1.55304 * 110.84835 * 182.77141 * 17 15 14 20 20 C 1.55201 * 100.82780 * 152.17821 * 19 17 15 21 21 O 1.43644 * 105.26154 * 323.81921 * 20 19 17 22 22 C 1.43245 * 109.97166 * 24.28354 * 21 20 19 23 23 C 1.38634 * 120.50628 * 359.71271 * 12 11 10 24 24 C 1.37621 * 120.24664 * 0.02562 * 23 12 11 25 25 H 0.96999 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.12568 * 359.96793 * 10 9 7 27 27 H 1.07998 * 119.87988 * 180.27141 * 11 10 9 28 28 H 1.09007 * 109.46786 * 30.01544 * 13 12 11 29 29 H 1.09001 * 109.47558 * 150.01266 * 13 12 11 30 30 H 1.09004 * 111.12515 * 270.24614 * 19 17 15 31 31 H 1.09010 * 111.12292 * 34.40506 * 19 17 15 32 32 H 1.09002 * 110.37312 * 204.80078 * 20 19 17 33 33 H 1.09001 * 110.21297 * 82.74927 * 20 19 17 34 34 H 1.08998 * 109.82725 * 238.77656 * 22 21 20 35 35 H 1.09000 * 109.82862 * 117.80547 * 22 21 20 36 36 H 1.07998 * 119.87965 * 180.02562 * 23 12 11 37 37 H 1.08002 * 120.13117 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3942 2.1016 -1.3957 5 1 1.4907 2.6232 0.7935 6 1 3.5844 1.4145 0.6023 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2342 -0.2863 9 6 1.3502 -2.4083 0.3673 10 6 0.2266 -2.3679 1.2134 11 6 -0.4091 -3.5381 1.5606 12 6 0.0604 -4.7543 1.0891 13 6 -0.6401 -6.0294 1.4819 14 8 -0.0510 -6.5489 2.7031 15 6 -0.5653 -7.6887 3.1910 16 8 -1.4772 -8.2346 2.6163 17 6 -0.0046 -8.2881 4.4548 18 1 -0.0933 -7.5889 5.2863 19 6 -0.7057 -9.6335 4.7869 20 6 0.4196 -10.3640 5.5672 21 8 1.6419 -9.9742 4.9212 22 6 1.4641 -8.7193 4.2539 23 6 1.1697 -4.8065 0.2592 24 6 1.8179 -3.6485 -0.1054 25 1 -0.4850 0.8401 0.0004 26 1 -0.1378 -1.4219 1.5859 27 1 -1.2743 -3.5092 2.2063 28 1 -1.6984 -5.8267 1.6466 29 1 -0.5308 -6.7645 0.6845 30 1 -1.5835 -9.4749 5.4134 31 1 -0.9670 -10.1752 3.8777 32 1 0.2859 -11.4439 5.5039 33 1 0.4239 -10.0443 6.6093 34 1 1.6738 -8.8332 3.1903 35 1 2.1310 -7.9731 4.6857 36 1 1.5266 -5.7594 -0.1026 37 1 2.6821 -3.6914 -0.7516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271850191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:49 Heat of formation + Delta-G solvation = -137.705581 kcal Electronic energy + Delta-G solvation = -20342.506480 eV Core-core repulsion = 17048.509593 eV Total energy + Delta-G solvation = -3293.996887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.82716 -40.06117 -39.40412 -37.55645 -35.69559 -33.58058 -32.56029 -31.25186 -30.54277 -28.92512 -25.94446 -24.56777 -23.36757 -22.96896 -21.88509 -21.40264 -19.28003 -18.88614 -18.10346 -17.87902 -17.22733 -16.91511 -16.49392 -15.89218 -15.71639 -15.51530 -15.31798 -14.43538 -14.37328 -14.11906 -13.93566 -13.85127 -13.39431 -13.26104 -13.03446 -12.80002 -12.56022 -12.44855 -12.40760 -12.22070 -12.00796 -11.72126 -11.65878 -11.45315 -11.30510 -11.04506 -10.55742 -9.45092 -9.35042 -8.70326 -6.40803 0.70724 1.05602 1.09694 1.38183 1.42025 1.53751 1.83923 2.19187 2.68163 2.85711 3.16674 3.61488 3.76809 3.78596 4.03540 4.04619 4.06846 4.09802 4.26370 4.46056 4.49101 4.53639 4.68181 4.71423 4.83278 4.87767 4.99125 5.07581 5.11053 5.28366 5.37299 5.44713 5.63749 5.86444 5.89985 6.04344 6.12156 6.30748 6.62856 6.65328 6.87436 6.95619 8.26964 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.037216 B = 0.003155 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.193053 B = 8873.170796 C = 9105.568360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.494 4.494 8 H 0.080 0.920 9 C 0.089 3.911 10 C -0.192 4.192 11 C -0.080 4.080 12 C -0.231 4.231 13 C 0.141 3.859 14 O -0.357 6.357 15 C 0.467 3.533 16 O -0.536 6.536 17 C -0.118 4.118 18 H 0.146 0.854 19 C -0.136 4.136 20 C 0.049 3.951 21 O -0.400 6.400 22 C 0.068 3.932 23 C -0.065 4.065 24 C -0.245 4.245 25 H 0.291 0.709 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 -12.131 9.908 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.232 4.232 13 C 0.068 3.932 14 O -0.273 6.273 15 C 0.311 3.689 16 O -0.426 6.426 17 C -0.137 4.137 18 H 0.164 0.836 19 C -0.174 4.174 20 C -0.026 4.026 21 O -0.320 6.320 22 C -0.009 4.009 23 C -0.083 4.083 24 C -0.264 4.264 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.897 -12.227 9.685 15.624 hybrid contribution -0.200 1.071 -0.532 1.213 sum -1.097 -11.156 9.153 14.472 Atomic orbital electron populations 1.69870 1.09104 1.30891 1.34561 1.26820 0.95508 1.04707 0.91011 0.85164 0.79226 0.75722 0.79460 1.18660 1.18958 1.18124 1.19928 0.98491 0.92378 1.41427 0.90224 1.18045 0.91516 0.93189 0.88616 1.21247 1.00408 0.96948 1.02565 1.20771 0.98438 0.92419 0.98183 1.18970 1.02853 0.92396 1.09020 1.21561 0.95791 0.92708 0.83107 1.86678 1.59888 1.38497 1.42242 1.23839 0.80250 0.78464 0.86318 1.90626 1.29725 1.61756 1.60541 1.22794 0.97247 0.99857 0.93807 0.83597 1.23330 0.99705 0.92211 1.02135 1.23678 0.81109 1.01009 0.96806 1.88414 1.35259 1.37704 1.70575 1.23002 0.93434 0.86430 0.98037 1.20706 0.94033 0.97235 0.96367 1.21174 1.04631 0.92990 1.07635 0.89860 0.87882 0.87492 0.91345 0.91042 0.86975 0.90495 0.87731 0.89546 0.91915 0.88603 0.86468 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.96 11.00 21.83 0.24 -41.72 16 2 C 0.04 1.75 5.14 85.25 0.44 2.19 16 3 Si 0.98 37.09 29.59 68.60 2.03 39.12 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.49 -26.14 9.05 23.46 0.21 -25.93 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.02 16 9 C 0.09 4.75 5.57 -21.29 -0.12 4.63 16 10 C -0.19 -10.02 8.69 22.73 0.20 -9.82 16 11 C -0.08 -3.67 9.67 22.22 0.21 -3.46 16 12 C -0.23 -9.88 5.54 -19.68 -0.11 -9.99 16 13 C 0.14 5.05 5.58 71.24 0.40 5.45 16 14 O -0.36 -11.95 10.20 -51.41 -0.52 -12.47 16 15 C 0.47 13.49 7.13 71.24 0.51 14.00 16 16 O -0.54 -17.91 15.47 21.98 0.34 -17.57 16 17 C -0.12 -2.38 3.49 -10.28 -0.04 -2.41 16 18 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 19 C -0.14 -2.25 6.28 32.14 0.20 -2.05 16 20 C 0.05 0.71 7.78 72.74 0.57 1.27 16 21 O -0.40 -8.53 11.36 -148.98 -1.69 -10.23 16 22 C 0.07 1.42 7.40 72.45 0.54 1.96 16 23 C -0.07 -2.84 9.67 22.22 0.21 -2.62 16 24 C -0.24 -11.89 9.80 22.73 0.22 -11.67 16 25 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 26 H 0.10 5.59 6.22 -2.91 -0.02 5.57 16 27 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 28 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 29 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.55 7.42 -2.38 -0.02 1.54 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 1.47 7.81 -2.39 -0.02 1.45 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -61.89 318.39 4.91 -56.98 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 1.07 Total: 24.33 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 3.45 Total: -38.44 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.24 Total: -41.72 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.88 Total: -40.27 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -61.89 4.91 -56.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271850191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.728 kcal (2) G-P(sol) polarization free energy of solvation -61.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds