Wall clock time and date at job start Mon Mar 30 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 C 1.52998 * 109.47146 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47352 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99638 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00064 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00060 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99912 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47134 * 89.99921 * 11 9 7 13 13 H 1.48496 * 109.47002 * 210.00178 * 11 9 7 14 14 H 1.48504 * 109.46874 * 329.99946 * 11 9 7 15 15 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 16 16 C 1.38701 * 120.39586 * 79.72248 * 15 2 1 17 17 N 1.30985 * 121.32794 * 179.75175 * 16 15 2 18 18 C 1.34597 * 122.15668 * 0.53870 * 17 16 15 19 19 C 1.45240 * 129.03091 * 179.72731 * 18 17 16 20 20 C 1.32002 * 114.93632 * 180.02562 * 19 18 17 21 21 S 1.75319 * 111.37255 * 0.02562 * 20 19 18 22 22 C 1.39802 * 119.23126 * 359.72782 * 18 17 16 23 23 C 1.38049 * 120.39994 * 260.00051 * 15 2 1 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.00896 * 110.99793 * 208.95333 * 4 2 1 28 28 H 1.09005 * 109.47066 * 299.99968 * 5 4 2 29 29 H 1.09001 * 109.47085 * 59.99954 * 5 4 2 30 30 H 1.08995 * 109.47099 * 300.00333 * 6 5 4 31 31 H 1.09010 * 109.47207 * 59.99644 * 6 5 4 32 32 H 0.96997 * 119.99893 * 179.97438 * 10 9 7 33 33 H 1.07999 * 119.33556 * 0.02562 * 16 15 2 34 34 H 1.07993 * 122.53035 * 359.97438 * 19 18 17 35 35 H 1.07999 * 124.31261 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.67387 * 359.97438 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5329 -3.5745 7 6 2.6589 0.4057 -4.7518 8 1 2.3638 1.4381 -4.6358 9 6 3.0951 -0.0533 -5.9766 10 7 3.4549 -1.3103 -6.1176 11 14 3.1748 1.1104 -7.4357 12 1 4.5109 1.7569 -7.4807 13 1 2.9514 0.3476 -8.6900 14 1 2.1254 2.1519 -7.2961 15 6 2.0324 -0.7104 1.2304 16 6 2.0651 -2.0963 1.2764 17 7 2.5027 -2.7324 2.3345 18 6 2.9322 -2.0844 3.4332 19 6 3.4379 -2.6329 4.6794 20 6 3.7851 -1.7349 5.5824 21 16 3.5253 -0.1038 4.9942 22 6 2.9189 -0.6866 3.4504 23 6 2.4602 0.0102 2.3274 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 3.5903 -0.9270 -3.3692 31 1 1.9184 -1.3564 -3.8031 32 1 3.7614 -1.6333 -6.9794 33 1 1.7271 -2.6622 0.4209 34 1 3.5227 -3.6952 4.8543 35 1 4.1783 -1.9743 6.5593 36 1 2.4412 1.0901 2.3188 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273190096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:03 Heat of formation + Delta-G solvation = 43.669981 kcal Electronic energy + Delta-G solvation = -17938.577094 eV Core-core repulsion = 15127.490864 eV Total energy + Delta-G solvation = -2811.086231 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54094 -37.27924 -35.29609 -33.48947 -32.46869 -31.12053 -28.97923 -28.06179 -24.87291 -24.27947 -23.49337 -21.71731 -20.57294 -20.47565 -17.93723 -16.95391 -16.34542 -16.08923 -15.69497 -14.80373 -14.63001 -14.43585 -14.16858 -13.84890 -13.49955 -13.07108 -12.84158 -12.67934 -12.28360 -12.21496 -11.73000 -11.59398 -11.42731 -11.14839 -11.05155 -10.88799 -10.56890 -10.44386 -10.02882 -9.51332 -9.41740 -9.17353 -8.77571 -8.36865 -8.16949 -7.95999 -6.00873 -4.03702 0.36011 0.94002 1.17987 1.65569 1.92745 3.31265 3.37685 3.40651 3.61091 3.89221 4.34112 4.44332 4.51983 4.67135 4.82378 4.88824 5.22094 5.25465 5.35216 5.43132 5.49364 5.51598 5.65455 5.80529 5.89423 6.02214 6.07966 6.26994 6.32861 6.42328 6.47059 6.94568 7.38299 7.67958 7.75951 7.77943 7.89196 8.05395 8.41130 9.03490 9.60243 11.10486 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.003025 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.392914 B = 9254.514994 C = 9344.473029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.126 3.874 3 H 0.052 0.948 4 N -0.684 5.684 5 C 0.066 3.934 6 C 0.025 3.975 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.892 5.892 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.117 4.117 16 C 0.145 3.855 17 N -0.457 5.457 18 C 0.115 3.885 19 C -0.104 4.104 20 C -0.181 4.181 21 S 0.092 5.908 22 C -0.192 4.192 23 C -0.037 4.037 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.339 0.661 28 H 0.061 0.939 29 H 0.017 0.983 30 H 0.013 0.987 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.677 1.199 23.495 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 H 0.069 0.931 4 N -0.315 5.315 5 C -0.062 4.062 6 C -0.012 4.012 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.531 5.531 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.122 4.122 16 C -0.024 4.024 17 N -0.165 5.165 18 C -0.020 4.020 19 C -0.135 4.135 20 C -0.316 4.316 21 S 0.353 5.647 22 C -0.309 4.309 23 C -0.068 4.068 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.157 0.843 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.193 0.807 34 H 0.171 0.829 35 H 0.191 0.809 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.940 1.285 23.943 24.056 hybrid contribution 0.715 0.691 -1.220 1.574 sum -1.226 1.976 22.723 22.842 Atomic orbital electron populations 1.21784 0.93404 1.02711 1.01329 1.20410 0.96253 0.95208 0.86554 0.93056 1.60773 1.33353 1.34028 1.03397 1.22233 0.99811 0.93470 0.90659 1.19067 0.96285 0.95844 0.90006 1.21161 1.44083 0.96328 0.94572 0.92770 1.24999 0.95392 0.95087 0.98853 1.69968 1.44341 1.14318 1.24517 0.86592 0.78342 0.80881 0.82168 1.20723 1.21174 1.19880 1.21081 0.99297 0.95614 0.96229 1.22819 0.92968 0.91480 0.95142 1.67649 1.09710 1.40159 0.99004 1.20222 0.99322 0.88349 0.94073 1.20649 1.00982 1.01282 0.90591 1.25146 1.06710 0.95763 1.03992 1.84129 1.67414 1.06649 1.06514 1.23490 1.08850 0.98212 1.00382 1.20772 0.95590 1.00092 0.90314 0.93097 0.91738 0.91644 0.84324 0.92020 0.96511 0.96819 0.95508 0.92958 0.80732 0.82921 0.80858 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.39 37.16 0.35 -1.33 16 2 C 0.13 1.72 2.83 -68.86 -0.20 1.52 16 3 H 0.05 0.69 7.69 -51.93 -0.40 0.29 16 4 N -0.68 -11.39 5.71 -107.95 -0.62 -12.01 16 5 C 0.07 1.33 5.42 -3.83 -0.02 1.31 16 6 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 11 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 15 C -0.12 -1.51 4.71 -104.52 -0.49 -2.00 16 16 C 0.15 1.99 10.17 -17.74 -0.18 1.81 16 17 N -0.46 -6.63 10.41 -10.21 -0.11 -6.74 16 18 C 0.12 1.52 7.16 -83.29 -0.60 0.92 16 19 C -0.10 -1.07 10.39 -38.72 -0.40 -1.47 16 20 C -0.18 -1.49 11.03 28.82 0.32 -1.17 16 21 S 0.09 0.86 23.23 -107.50 -2.50 -1.64 16 22 C -0.19 -2.35 6.49 -38.38 -0.25 -2.60 16 23 C -0.04 -0.44 9.83 -39.03 -0.38 -0.83 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.87 7.45 -51.93 -0.39 0.48 16 27 H 0.34 5.65 8.01 -39.29 -0.31 5.33 16 28 H 0.06 1.23 7.44 -51.93 -0.39 0.85 16 29 H 0.02 0.33 8.06 -51.93 -0.42 -0.08 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.18 2.32 7.73 -52.49 -0.41 1.91 16 34 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -30.82 319.91 -9.91 -40.73 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.81 Total: 1.09 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.41 Total: -16.75 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.01 Total: -44.79 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.50 Total: -1.64 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.82 -9.91 -40.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273190096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.400 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds