Wall clock time and date at job start Mon Mar 30 2020 01:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 C 1.52998 * 109.47146 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47352 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99638 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00064 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00060 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99912 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47134 * 89.99921 * 11 9 7 13 13 H 1.48496 * 109.47002 * 210.00178 * 11 9 7 14 14 H 1.48504 * 109.46874 * 329.99946 * 11 9 7 15 15 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 16 16 C 1.38701 * 120.39586 * 79.72248 * 15 2 1 17 17 N 1.30985 * 121.32794 * 179.75175 * 16 15 2 18 18 C 1.34597 * 122.15668 * 0.53870 * 17 16 15 19 19 C 1.45240 * 129.03091 * 179.72731 * 18 17 16 20 20 C 1.32002 * 114.93632 * 180.02562 * 19 18 17 21 21 S 1.75319 * 111.37255 * 0.02562 * 20 19 18 22 22 C 1.39802 * 119.23126 * 359.72782 * 18 17 16 23 23 C 1.38049 * 120.39994 * 260.00051 * 15 2 1 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.00896 * 110.99793 * 208.95333 * 4 2 1 28 28 H 1.09005 * 109.47066 * 299.99968 * 5 4 2 29 29 H 1.09001 * 109.47085 * 59.99954 * 5 4 2 30 30 H 1.08995 * 109.47099 * 300.00333 * 6 5 4 31 31 H 1.09010 * 109.47207 * 59.99644 * 6 5 4 32 32 H 0.96997 * 119.99893 * 179.97438 * 10 9 7 33 33 H 1.07999 * 119.33556 * 0.02562 * 16 15 2 34 34 H 1.07993 * 122.53035 * 359.97438 * 19 18 17 35 35 H 1.07999 * 124.31261 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.67387 * 359.97438 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5329 -3.5745 7 6 2.6589 0.4057 -4.7518 8 1 2.3638 1.4381 -4.6358 9 6 3.0951 -0.0533 -5.9766 10 7 3.4549 -1.3103 -6.1176 11 14 3.1748 1.1104 -7.4357 12 1 4.5109 1.7569 -7.4807 13 1 2.9514 0.3476 -8.6900 14 1 2.1254 2.1519 -7.2961 15 6 2.0324 -0.7104 1.2304 16 6 2.0651 -2.0963 1.2764 17 7 2.5027 -2.7324 2.3345 18 6 2.9322 -2.0844 3.4332 19 6 3.4379 -2.6329 4.6794 20 6 3.7851 -1.7349 5.5824 21 16 3.5253 -0.1038 4.9942 22 6 2.9189 -0.6866 3.4504 23 6 2.4602 0.0102 2.3274 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 3.5903 -0.9270 -3.3692 31 1 1.9184 -1.3564 -3.8031 32 1 3.7614 -1.6333 -6.9794 33 1 1.7271 -2.6622 0.4209 34 1 3.5227 -3.6952 4.8543 35 1 4.1783 -1.9743 6.5593 36 1 2.4412 1.0901 2.3188 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273190096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:02 Heat of formation + Delta-G solvation = 24.646131 kcal Electronic energy + Delta-G solvation = -17939.402031 eV Core-core repulsion = 15127.490864 eV Total energy + Delta-G solvation = -2811.911167 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48953 -38.45620 -36.37211 -35.24293 -33.79764 -32.47619 -30.18196 -29.49501 -26.33072 -25.47861 -24.65507 -22.75459 -22.25071 -21.48663 -18.86911 -18.41438 -17.88815 -17.11727 -16.90031 -16.42414 -15.81762 -15.65449 -15.30049 -14.99257 -14.49391 -14.42338 -14.13395 -14.02616 -13.53847 -13.45919 -12.97666 -12.90332 -12.79334 -12.60113 -12.39653 -12.34733 -12.00042 -11.79265 -11.45898 -11.32501 -11.21651 -10.55775 -10.47946 -9.69845 -9.34582 -8.93821 -8.19224 -6.30541 -0.51167 -0.01503 0.39541 0.89610 1.12055 1.41157 1.42524 1.53637 2.41138 2.63727 3.04869 3.14510 3.21775 3.52164 3.65652 3.86719 4.11455 4.21146 4.36533 4.39543 4.54075 4.56226 4.66245 4.69636 4.83401 4.92950 4.98782 5.04725 5.09285 5.15765 5.37252 5.46976 5.50529 5.69104 5.80106 6.12882 6.26408 6.46661 6.80378 6.87350 7.38819 8.92884 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.003025 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.392914 B = 9254.514994 C = 9344.473029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.132 3.868 3 H 0.060 0.940 4 N -0.687 5.687 5 C 0.086 3.914 6 C 0.031 3.969 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.000 4.000 10 N -0.932 5.932 11 Si 0.966 3.034 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.262 1.262 15 C -0.125 4.125 16 C 0.135 3.865 17 N -0.484 5.484 18 C 0.096 3.904 19 C -0.131 4.131 20 C -0.158 4.158 21 S 0.124 5.876 22 C -0.214 4.214 23 C -0.033 4.033 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.337 0.663 28 H 0.065 0.935 29 H 0.020 0.980 30 H -0.012 1.012 31 H -0.004 1.004 32 H 0.263 0.737 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.213 0.787 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 3.021 25.269 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.022 3.978 3 H 0.078 0.922 4 N -0.318 5.318 5 C -0.043 4.043 6 C -0.006 4.006 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.198 4.198 10 N -0.572 5.572 11 Si 0.790 3.210 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.186 1.186 15 C -0.130 4.130 16 C -0.034 4.034 17 N -0.193 5.193 18 C -0.039 4.039 19 C -0.161 4.161 20 C -0.293 4.293 21 S 0.386 5.614 22 C -0.331 4.331 23 C -0.063 4.063 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.007 0.993 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.185 0.815 34 H 0.183 0.817 35 H 0.229 0.771 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.782 3.120 25.740 25.990 hybrid contribution 0.703 0.094 -1.605 1.755 sum -1.079 3.214 24.135 24.372 Atomic orbital electron populations 1.21764 0.92539 1.02558 1.02015 1.20400 0.96810 0.95221 0.85347 0.92192 1.60666 1.33369 1.33761 1.04049 1.21828 0.99557 0.93071 0.89816 1.18918 0.94332 0.95147 0.92212 1.21625 1.43882 0.97033 0.95629 0.91989 1.25974 0.94862 0.96791 1.02183 1.70110 1.45283 1.16408 1.25421 0.85437 0.78849 0.78694 0.78000 1.19843 1.20851 1.18577 1.20891 1.00524 0.95171 0.96421 1.22761 0.93543 0.92026 0.95104 1.67603 1.10820 1.41072 0.99802 1.20773 0.99308 0.89276 0.94564 1.20830 1.02637 1.02516 0.90084 1.25641 1.04167 0.94707 1.04800 1.84046 1.66266 1.06921 1.04212 1.23793 1.09141 0.98248 1.01932 1.21019 0.94368 1.01126 0.89837 0.90869 0.92364 0.92398 0.84499 0.91660 0.96131 0.99330 0.98536 0.92800 0.81469 0.81656 0.77053 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.39 71.98 0.68 -2.49 16 2 C 0.13 3.51 2.83 44.17 0.13 3.64 16 3 H 0.06 1.52 7.69 -2.39 -0.02 1.50 16 4 N -0.69 -23.28 5.71 -495.45 -2.83 -26.11 16 5 C 0.09 3.48 5.42 86.30 0.47 3.95 16 6 C 0.03 1.66 5.23 29.85 0.16 1.82 16 7 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 10 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 11 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 15 C -0.12 -3.18 4.71 -19.80 -0.09 -3.27 16 16 C 0.13 3.81 10.17 84.93 0.86 4.67 16 17 N -0.48 -14.36 10.41 -186.20 -1.94 -16.30 16 18 C 0.10 2.48 7.16 40.90 0.29 2.77 16 19 C -0.13 -2.45 10.39 23.16 0.24 -2.21 16 20 C -0.16 -2.11 11.03 66.91 0.74 -1.37 16 21 S 0.12 1.98 23.23 -56.49 -1.31 0.67 16 22 C -0.21 -4.93 6.49 23.05 0.15 -4.78 16 23 C -0.03 -0.75 9.83 22.63 0.22 -0.52 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.48 7.45 -2.38 -0.02 1.46 16 27 H 0.34 11.64 8.01 -89.70 -0.72 10.92 16 28 H 0.06 2.60 7.44 -2.38 -0.02 2.58 16 29 H 0.02 0.81 8.06 -2.39 -0.02 0.80 16 30 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.17 4.75 7.73 -2.91 -0.02 4.73 16 34 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.21 1.11 8.06 -2.91 -0.02 1.08 16 36 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -67.51 319.91 1.13 -66.38 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.37 Total: 13.98 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 4.54 Total: -27.95 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -4.49 Total: -99.31 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.31 Total: 0.67 kcal Total: -67.51 1.13 -66.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273190096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.022 kcal (2) G-P(sol) polarization free energy of solvation -67.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds