Wall clock time and date at job start Mon Mar 30 2020 01:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46942 * 2 1 4 4 N 1.46891 * 109.47203 * 119.99791 * 2 1 3 5 5 C 1.46908 * 111.00153 * 275.00116 * 4 2 1 6 6 C 1.53000 * 109.46974 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.46538 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00838 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99888 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00272 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99917 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.46955 * 89.99868 * 11 9 7 13 13 H 1.48498 * 109.47381 * 209.99926 * 11 9 7 14 14 H 1.48503 * 109.47077 * 330.00050 * 11 9 7 15 15 C 1.50700 * 109.47083 * 240.00062 * 2 1 3 16 16 C 1.38700 * 120.39893 * 279.99697 * 15 2 1 17 17 N 1.30981 * 121.33271 * 180.02562 * 16 15 2 18 18 C 1.34591 * 122.15635 * 0.02562 * 17 16 15 19 19 C 1.45246 * 129.03574 * 179.97438 * 18 17 16 20 20 C 1.31990 * 114.94026 * 180.02562 * 19 18 17 21 21 S 1.75327 * 111.37372 * 359.97438 * 20 19 18 22 22 C 1.39802 * 119.23234 * 359.97438 * 18 17 16 23 23 C 1.38051 * 120.39938 * 100.02026 * 15 2 1 24 24 H 1.08992 * 109.47123 * 300.00060 * 1 2 3 25 25 H 1.09003 * 109.46877 * 60.00506 * 1 2 3 26 26 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.00901 * 111.00371 * 151.04836 * 4 2 1 28 28 H 1.08991 * 109.46645 * 300.00070 * 5 4 2 29 29 H 1.09000 * 109.46549 * 59.99767 * 5 4 2 30 30 H 1.08996 * 109.47221 * 299.99504 * 6 5 4 31 31 H 1.09007 * 109.47181 * 60.00293 * 6 5 4 32 32 H 0.96994 * 120.00054 * 180.02562 * 10 9 7 33 33 H 1.08003 * 119.33153 * 0.04697 * 16 15 2 34 34 H 1.08004 * 122.52727 * 359.74620 * 19 18 17 35 35 H 1.08004 * 124.31205 * 180.02562 * 20 19 18 36 36 H 1.07991 * 120.67647 * 359.95913 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2227 2.3469 6 6 2.5951 -0.5330 3.5745 7 6 2.6600 0.4060 4.7514 8 1 2.3648 1.4383 4.6356 9 6 3.0964 -0.0530 5.9762 10 7 3.1526 0.7663 7.0034 11 14 3.6076 -1.8385 6.1765 12 1 5.0581 -1.9734 5.8878 13 1 3.3372 -2.2776 7.5690 14 1 2.8342 -2.6838 5.2318 15 6 2.0323 -0.7104 -1.2305 16 6 2.0705 -2.0962 -1.2744 17 7 2.5040 -2.7323 -2.3341 18 6 2.9345 -2.0844 -3.4324 19 6 3.4417 -2.6327 -4.6781 20 6 3.7905 -1.7347 -5.5803 21 16 3.5304 -0.1036 -4.9921 22 6 2.9207 -0.6865 -3.4498 23 6 2.4605 0.0103 -2.3273 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 2.9173 -1.1204 1.0287 28 1 2.7588 1.0462 2.1181 29 1 1.0870 0.6164 2.5524 30 1 1.9183 -1.3563 3.8030 31 1 3.5904 -0.9271 3.3691 32 1 3.4599 0.4435 7.8649 33 1 1.7356 -2.6621 -0.4176 34 1 3.5312 -3.6950 -4.8512 35 1 4.1849 -1.9741 -6.5568 36 1 2.4409 1.0900 -2.3190 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273190100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:05 Heat of formation + Delta-G solvation = 47.012243 kcal Electronic energy + Delta-G solvation = -17997.672914 eV Core-core repulsion = 15186.731615 eV Total energy + Delta-G solvation = -2810.941299 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60274 -37.37328 -35.37745 -33.52420 -32.49313 -31.30104 -29.17412 -28.39886 -24.95985 -24.33274 -23.45594 -21.72907 -20.56639 -20.41595 -17.98765 -17.05965 -16.69636 -16.19888 -15.80580 -14.87291 -14.69232 -14.30423 -14.21137 -13.84486 -13.51557 -13.15170 -13.05949 -12.75717 -12.56503 -12.25142 -11.85417 -11.72572 -11.50578 -11.36137 -11.20315 -10.92293 -10.52758 -10.10072 -9.89930 -9.78911 -9.55115 -9.24654 -8.84062 -8.54734 -8.21657 -8.09229 -6.05506 -4.04213 0.30630 0.88138 1.13403 1.61148 1.87584 3.32178 3.39904 3.45445 3.54925 3.83549 4.29508 4.42426 4.45678 4.58029 4.75955 4.83912 5.14822 5.19437 5.29220 5.37739 5.43779 5.44650 5.60664 5.74965 5.83876 5.95957 6.01571 6.14349 6.20131 6.34211 6.40486 6.73949 7.07139 7.33199 7.52389 7.67240 7.71278 7.84433 8.51206 8.98296 9.56807 11.07778 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.003302 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.703461 B = 8478.183806 C = 8752.273037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.127 3.873 3 H 0.054 0.946 4 N -0.687 5.687 5 C 0.074 3.926 6 C -0.010 4.010 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.067 3.933 10 N -0.904 5.904 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.262 1.262 15 C -0.118 4.118 16 C 0.144 3.856 17 N -0.458 5.458 18 C 0.116 3.884 19 C -0.105 4.105 20 C -0.180 4.180 21 S 0.094 5.906 22 C -0.193 4.193 23 C -0.036 4.036 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.338 0.662 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.009 0.991 32 H 0.263 0.737 33 H 0.175 0.825 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 -3.556 -25.869 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.017 3.983 3 H 0.072 0.928 4 N -0.319 5.319 5 C -0.054 4.054 6 C -0.048 4.048 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.134 4.134 10 N -0.543 5.543 11 Si 0.708 3.292 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.187 1.187 15 C -0.123 4.123 16 C -0.025 4.025 17 N -0.166 5.166 18 C -0.019 4.019 19 C -0.136 4.136 20 C -0.316 4.316 21 S 0.356 5.644 22 C -0.310 4.310 23 C -0.066 4.066 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.192 0.808 34 H 0.171 0.829 35 H 0.192 0.808 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.324 -3.329 -26.259 26.502 hybrid contribution 0.933 -0.733 0.620 1.339 sum -0.391 -4.062 -25.639 25.962 Atomic orbital electron populations 1.21788 0.93281 1.02714 1.01502 1.20399 0.96321 0.95293 0.86327 0.92815 1.60779 1.33222 1.34205 1.03660 1.22031 1.00411 0.93284 0.89684 1.19546 0.95653 0.96773 0.92779 1.21056 1.44422 0.97677 0.92915 0.91119 1.25008 0.94997 0.97619 0.95778 1.69910 1.47670 1.35408 1.01281 0.86754 0.79251 0.85797 0.77379 1.20411 1.21427 1.18675 1.21067 0.99416 0.95589 0.96275 1.22792 0.93133 0.91467 0.95150 1.67637 1.09766 1.40172 0.98989 1.20218 0.99282 0.88355 0.94071 1.20646 1.01043 1.01288 0.90609 1.25158 1.06594 0.95787 1.04013 1.84160 1.67177 1.06576 1.06535 1.23501 1.08797 0.98212 1.00439 1.20781 0.95419 1.00147 0.90296 0.91536 0.92980 0.91768 0.84444 0.95837 0.91385 0.95514 0.97304 0.92702 0.80835 0.82924 0.80826 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.40 37.16 0.35 -1.26 16 2 C 0.13 1.64 2.83 -68.87 -0.20 1.44 16 3 H 0.05 0.69 7.69 -51.93 -0.40 0.29 16 4 N -0.69 -10.69 5.71 -107.95 -0.62 -11.30 16 5 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 6 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 11 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 15 C -0.12 -1.45 4.72 -104.52 -0.49 -1.94 16 16 C 0.14 1.86 10.17 -17.74 -0.18 1.68 16 17 N -0.46 -6.35 10.41 -10.21 -0.11 -6.45 16 18 C 0.12 1.47 7.17 -83.29 -0.60 0.87 16 19 C -0.11 -1.03 10.39 -38.72 -0.40 -1.43 16 20 C -0.18 -1.42 11.03 28.82 0.32 -1.10 16 21 S 0.09 0.85 23.23 -107.50 -2.50 -1.65 16 22 C -0.19 -2.26 6.49 -38.38 -0.25 -2.51 16 23 C -0.04 -0.41 9.83 -39.03 -0.38 -0.79 16 24 H 0.07 0.85 7.45 -51.93 -0.39 0.46 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.34 5.15 8.00 -39.29 -0.31 4.83 16 28 H 0.02 0.45 8.05 -51.93 -0.42 0.04 16 29 H 0.07 1.32 7.44 -51.93 -0.39 0.93 16 30 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 31 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.17 2.14 7.72 -52.48 -0.41 1.74 16 34 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 316.29 15.07 4.77 4.77 Total: -1.00 -31.40 316.29 -9.53 -40.94 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.78 Total: 0.93 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.40 Total: -17.24 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.05 Total: -44.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.50 Total: -1.65 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.40 -9.53 -40.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273190100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.948 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds