Wall clock time and date at job start Mon Mar 30 2020 01:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46942 * 2 1 4 4 N 1.46891 * 109.47203 * 119.99791 * 2 1 3 5 5 C 1.46908 * 111.00153 * 275.00116 * 4 2 1 6 6 C 1.53000 * 109.46974 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.46538 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00838 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99888 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00272 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99917 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.46955 * 89.99868 * 11 9 7 13 13 H 1.48498 * 109.47381 * 209.99926 * 11 9 7 14 14 H 1.48503 * 109.47077 * 330.00050 * 11 9 7 15 15 C 1.50700 * 109.47083 * 240.00062 * 2 1 3 16 16 C 1.38700 * 120.39893 * 279.99697 * 15 2 1 17 17 N 1.30981 * 121.33271 * 180.02562 * 16 15 2 18 18 C 1.34591 * 122.15635 * 0.02562 * 17 16 15 19 19 C 1.45246 * 129.03574 * 179.97438 * 18 17 16 20 20 C 1.31990 * 114.94026 * 180.02562 * 19 18 17 21 21 S 1.75327 * 111.37372 * 359.97438 * 20 19 18 22 22 C 1.39802 * 119.23234 * 359.97438 * 18 17 16 23 23 C 1.38051 * 120.39938 * 100.02026 * 15 2 1 24 24 H 1.08992 * 109.47123 * 300.00060 * 1 2 3 25 25 H 1.09003 * 109.46877 * 60.00506 * 1 2 3 26 26 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.00901 * 111.00371 * 151.04836 * 4 2 1 28 28 H 1.08991 * 109.46645 * 300.00070 * 5 4 2 29 29 H 1.09000 * 109.46549 * 59.99767 * 5 4 2 30 30 H 1.08996 * 109.47221 * 299.99504 * 6 5 4 31 31 H 1.09007 * 109.47181 * 60.00293 * 6 5 4 32 32 H 0.96994 * 120.00054 * 180.02562 * 10 9 7 33 33 H 1.08003 * 119.33153 * 0.04697 * 16 15 2 34 34 H 1.08004 * 122.52727 * 359.74620 * 19 18 17 35 35 H 1.08004 * 124.31205 * 180.02562 * 20 19 18 36 36 H 1.07991 * 120.67647 * 359.95913 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2227 2.3469 6 6 2.5951 -0.5330 3.5745 7 6 2.6600 0.4060 4.7514 8 1 2.3648 1.4383 4.6356 9 6 3.0964 -0.0530 5.9762 10 7 3.1526 0.7663 7.0034 11 14 3.6076 -1.8385 6.1765 12 1 5.0581 -1.9734 5.8878 13 1 3.3372 -2.2776 7.5690 14 1 2.8342 -2.6838 5.2318 15 6 2.0323 -0.7104 -1.2305 16 6 2.0705 -2.0962 -1.2744 17 7 2.5040 -2.7323 -2.3341 18 6 2.9345 -2.0844 -3.4324 19 6 3.4417 -2.6327 -4.6781 20 6 3.7905 -1.7347 -5.5803 21 16 3.5304 -0.1036 -4.9921 22 6 2.9207 -0.6865 -3.4498 23 6 2.4605 0.0103 -2.3273 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 2.9173 -1.1204 1.0287 28 1 2.7588 1.0462 2.1181 29 1 1.0870 0.6164 2.5524 30 1 1.9183 -1.3563 3.8030 31 1 3.5904 -0.9271 3.3691 32 1 3.4599 0.4435 7.8649 33 1 1.7356 -2.6621 -0.4176 34 1 3.5312 -3.6950 -4.8512 35 1 4.1849 -1.9741 -6.5568 36 1 2.4409 1.0900 -2.3190 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273190100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:04 Heat of formation + Delta-G solvation = 26.880241 kcal Electronic energy + Delta-G solvation = -17998.545903 eV Core-core repulsion = 15186.731615 eV Total energy + Delta-G solvation = -2811.814288 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49201 -38.48711 -36.38685 -35.20661 -33.86775 -32.65110 -30.44327 -29.59428 -26.29906 -25.44285 -24.58182 -22.66061 -22.16258 -21.48987 -19.01569 -18.72714 -17.88589 -17.14101 -16.89971 -16.29070 -15.84610 -15.63466 -15.27793 -14.99827 -14.76743 -14.44849 -14.37059 -14.02010 -13.57232 -13.52412 -13.05762 -12.97523 -12.85489 -12.58585 -12.36936 -12.01091 -11.81774 -11.73231 -11.64960 -11.40442 -11.32674 -10.76132 -10.48372 -9.69956 -9.39124 -8.94678 -8.29235 -6.33461 -0.51380 -0.01266 0.39414 0.89718 1.11913 1.37582 1.40049 1.52889 2.37501 2.63775 3.04815 3.06834 3.16202 3.51863 3.65510 3.86667 4.11521 4.19701 4.35455 4.37414 4.49331 4.53998 4.62996 4.69399 4.81439 4.91784 4.95470 5.01848 5.03252 5.14867 5.34697 5.35996 5.49852 5.51098 5.65307 6.10104 6.25566 6.45867 6.75307 6.80375 7.31601 8.87412 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.003302 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.703461 B = 8478.183806 C = 8752.273037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.133 3.867 3 H 0.058 0.942 4 N -0.684 5.684 5 C 0.089 3.911 6 C -0.005 4.005 7 C -0.532 4.532 8 H 0.033 0.967 9 C 0.005 3.995 10 N -0.952 5.952 11 Si 0.952 3.048 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.246 1.246 15 C -0.124 4.124 16 C 0.136 3.864 17 N -0.483 5.483 18 C 0.097 3.903 19 C -0.130 4.130 20 C -0.158 4.158 21 S 0.120 5.880 22 C -0.214 4.214 23 C -0.034 4.034 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.341 0.659 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.212 0.788 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -4.665 -28.468 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.022 3.978 3 H 0.076 0.924 4 N -0.315 5.315 5 C -0.040 4.040 6 C -0.043 4.043 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.192 4.192 10 N -0.592 5.592 11 Si 0.775 3.225 12 H -0.193 1.193 13 H -0.211 1.211 14 H -0.169 1.169 15 C -0.130 4.130 16 C -0.033 4.033 17 N -0.192 5.192 18 C -0.038 4.038 19 C -0.160 4.160 20 C -0.294 4.294 21 S 0.382 5.618 22 C -0.331 4.331 23 C -0.065 4.065 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.159 0.841 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.190 0.810 34 H 0.184 0.816 35 H 0.229 0.771 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.743 -4.434 -28.890 29.237 hybrid contribution 0.758 -0.285 1.290 1.523 sum 0.015 -4.718 -27.600 28.000 Atomic orbital electron populations 1.21766 0.92577 1.02710 1.01913 1.20373 0.96776 0.95202 0.85414 0.92434 1.60669 1.33476 1.33531 1.03865 1.21678 0.99676 0.93055 0.89613 1.19438 0.96133 0.95955 0.92755 1.21422 1.43679 0.97035 0.94935 0.94826 1.25988 0.95110 1.02686 0.95378 1.70060 1.49232 1.37903 1.02042 0.85633 0.79370 0.79783 0.77697 1.19337 1.21090 1.16904 1.20875 1.00529 0.95267 0.96312 1.22806 0.93446 0.91860 0.95185 1.67609 1.10830 1.40982 0.99733 1.20750 0.99275 0.89174 0.94613 1.20834 1.02541 1.02503 0.90114 1.25634 1.04233 0.94674 1.04831 1.84103 1.66167 1.07032 1.04526 1.23782 1.09169 0.98298 1.01851 1.21015 0.94396 1.01077 0.89968 0.92553 0.91100 0.91990 0.84070 0.96339 0.91886 0.95635 0.96591 0.92482 0.80973 0.81587 0.77140 0.82536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.40 71.98 0.68 -2.33 16 2 C 0.13 3.27 2.83 44.17 0.13 3.40 16 3 H 0.06 1.40 7.69 -2.39 -0.02 1.38 16 4 N -0.68 -20.67 5.71 -495.45 -2.83 -23.50 16 5 C 0.09 3.37 5.42 86.30 0.47 3.83 16 6 C -0.01 -0.23 4.30 29.85 0.13 -0.10 16 7 C -0.53 -30.68 9.66 25.60 0.25 -30.44 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 9 C 0.01 0.30 5.47 84.66 0.46 0.77 16 10 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 11 Si 0.95 44.70 27.47 68.60 1.88 46.59 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 15 C -0.12 -2.92 4.72 -19.80 -0.09 -3.02 16 16 C 0.14 3.47 10.17 84.93 0.86 4.33 16 17 N -0.48 -13.19 10.41 -186.20 -1.94 -15.13 16 18 C 0.10 2.35 7.17 40.90 0.29 2.64 16 19 C -0.13 -2.27 10.39 23.17 0.24 -2.03 16 20 C -0.16 -1.98 11.03 66.92 0.74 -1.24 16 21 S 0.12 1.84 23.23 -56.49 -1.31 0.53 16 22 C -0.21 -4.67 6.49 23.05 0.15 -4.52 16 23 C -0.03 -0.73 9.83 22.63 0.22 -0.51 16 24 H 0.06 1.39 7.45 -2.39 -0.02 1.38 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.34 10.04 8.00 -89.69 -0.72 9.32 16 28 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 29 H 0.06 2.45 7.44 -2.39 -0.02 2.43 16 30 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 31 H 0.02 0.71 7.57 -2.38 -0.02 0.70 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.17 4.23 7.72 -2.91 -0.02 4.21 16 34 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.16 2.64 8.06 -2.92 -0.02 2.62 16 Total: -1.00 -68.53 316.29 0.94 -67.59 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.31 Total: 12.86 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 4.52 Total: -29.22 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -4.47 Total: -98.35 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.31 Total: 0.53 kcal Total: -68.53 0.94 -67.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273190100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.471 kcal (2) G-P(sol) polarization free energy of solvation -68.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds